Prupe.1G168800_v2.0.a1

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000204
Physical Location & Seq
Forward (+)
13758307 .. 13759874
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G168800.1

Sequence Viewer

Length: 498 bp
ATGAAGGGGCTTCAGCCCCGCTCCATATCAAATGGAAACTTTGATGGCTCTGTCCGTAATAATGTGGCTGCCTCTGGTTTTGTTATCCGTGACTCTGACGGCCATGTCTTACTCGCTGGAGCTAAGAACATTGGTGACAACACTATTTCAATGGCTGAATGTATGGCTCTTCGTGATGGCCTTGCTTATGCGATCCATAGAGGTTGGCAGAATATCCTTGTGGAAGGGGATTCAAAGCTCATCATTGATTGTGTTAAACAGGAAGCGGATCCACCTTGGAGGTTAAAGGTTGGGGTGGAGATTGGGGATTTAGATTTGAGGGATATTAAGCTCCTTAGTTCTTTTTGTGGTGATCTATCCTTGAATCATATCTATAGCGAGGCGAACTTCACGGCGGATGCCGTTGCAAATTTGGGTCATGGGCTCAACCCTTCTAAGCTGTGGGAATCGGGCTTGCCTTTGAATTGTTTGATGAAGAGACCCTACGCCTCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

166

Amino Acids

17.81

Weight (kDa)

5.75

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 21
AciI CCGC 3 cut(s) 19, 266, 395
AclWI GGATC 3 cut(s) 187, 263, 276
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 409
AgsI TTSAA 4 cut(s) 150, 234, 364, 463
AluBI AGCT 4 cut(s) 122, 238, 331, 439
AluI AGCT 4 cut(s) 122, 238, 331, 439
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 3 cut(s) 187, 263, 276
AoxI GGCC 2 cut(s) 100, 178
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 146, 362
AxyI CCTNAGG 1 cut(s) 490
BamHI GGATCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 426
BarI GAAGNNNNNNTAC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 38, 170
BceAI ACGGC 3 cut(s) 115, 386, 408
BcoDI GTCTC 1 cut(s) 472
BfmI CTRYAG 1 cut(s) 373
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 1 cut(s) 275
Bse21I CCTNAGG 1 cut(s) 490
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 403
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 102, 180
BsmAI GTCTC 1 cut(s) 472
BsnI GGCC 2 cut(s) 102, 180
Bso31I GGTCTC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 3 cut(s) 192, 268, 352
BspACI CCGC 3 cut(s) 19, 266, 395
BspANI GGCC 2 cut(s) 102, 180
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 3 cut(s) 187, 263, 276
BspQI GCTCTTC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 472
BsrBI CCGCTC 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 3 cut(s) 192, 268, 352
BssT1I CCWWGG 1 cut(s) 275
Bst6I CTCTTC 2 cut(s) 174, 470
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 4 cut(s) 123, 335, 435, 490
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 195, 271, 355
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 3 cut(s) 192, 268, 352
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 490
BsuRI GGCC 2 cut(s) 102, 180
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 455
CviAII CATG 2 cut(s) 104, 419
DdeI CTNAG 4 cut(s) 123, 335, 435, 490
DpnI GATC 3 cut(s) 194, 270, 354
DpnII GATC 3 cut(s) 192, 268, 352
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 174, 470
EarI CTCTTC 2 cut(s) 174, 470
EciI GGCGGA 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 472
Eco81I CCTNAGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 2 cut(s) 107, 422
FaiI YATR 8 cut(s) 26, 105, 164, 189, 198, 369, 375, 420
FatI CATG 2 cut(s) 103, 418
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 2 cut(s) 102, 180
Hin1II CATG 2 cut(s) 107, 422
HinfI GANTC 4 cut(s) 92, 230, 364, 446
HphI GGTGA 2 cut(s) 146, 362
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 218, 441
HpyCH4V TGCA 1 cut(s) 407
HpyF3I CTNAG 4 cut(s) 123, 335, 435, 490
Hsp92II CATG 2 cut(s) 107, 422
Kzo9I GATC 3 cut(s) 192, 268, 352
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 3 cut(s) 26, 119, 336
LpnPI CCDG 4 cut(s) 60, 102, 245, 477
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 388
MaeIII GTNAC 2 cut(s) 89, 134
MalI GATC 3 cut(s) 194, 270, 354
MbiI CCGCTC 1 cut(s) 21
MboI GATC 3 cut(s) 192, 268, 352
MboII GAAGA 2 cut(s) 161, 487
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 2 cut(s) 409, 463
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 5 cut(s) 82, 194, 273, 312, 373
MseI TTAA 4 cut(s) 255, 284, 327, 496
NdeII GATC 3 cut(s) 192, 268, 352
NlaIII CATG 2 cut(s) 107, 422
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 89, 134
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 230, 364, 446
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 270
PsuI RGATCY 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 4 cut(s) 255, 284, 327, 496
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 192, 268, 352
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 426
SetI ASST 9 cut(s) 124, 205, 240, 277, 284, 291, 333, 441, 496
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 373
Sse9I AATT 2 cut(s) 409, 463
SsiI CCGC 3 cut(s) 19, 266, 395
StyI CCWWGG 1 cut(s) 275
TasI AATT 2 cut(s) 409, 463
TfiI GAWTC 3 cut(s) 230, 364, 446
Tru1I TTAA 4 cut(s) 255, 284, 327, 496
Tru9I TTAA 4 cut(s) 255, 284, 327, 496
TseFI GTSAC 2 cut(s) 89, 134
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 2 cut(s) 89, 134
TspDTI ATGAA 2 cut(s) 17, 488
TspGWI ACGGA 2 cut(s) 44, 77
XapI RAATTY 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.