Rmu_sc0001103.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001103.1
OG0000204
Physical Location & Seq
Reverse (-)
33132 .. 34266
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001103.1_g000007.1.cds

Sequence Viewer

Length: 543 bp
atgaaagtcgtagagcgcatcgatacgactggtggatttgccttcagaaatgctgaaggtctccacattttagaagcctacaagaatcttcatcaggtggatatccttttagcagaaggactttctcttagagcaggtctacatgcagctttgctttatggttactcttctttagacattgagggcgattcaaaagttctagtcgatgctatagcttgcaagatccagactccttggcgtctgaagttaattattcgagacattaaacttatagaaaattcaaatgcagctggtggatttgccttcagaaatgctgaaggtctccacattttagaagcctacaagaatcttcatcaggtggatatccttttagcagaaggactttctcttagagcaggtctacatgcagctttgctttatggttactcttctttagacattgagggcgattcaaaagttctagtcgatgctatagcttgcaagatccagactccttggcgtctgaagtcaattattcgagacattaaacttatagaaagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

180

Amino Acids

19.82

Weight (kDa)

6.3

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 125, 386
AccI GTMKAC 2 cut(s) 139, 400
AclWI GGATC 2 cut(s) 217, 478
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 6 cut(s) 28, 75, 263, 289, 336, 524
AcyI GRCGYC 2 cut(s) 238, 499
AgsI TTSAA 3 cut(s) 192, 282, 453
AluBI AGCT 5 cut(s) 149, 215, 290, 410, 476
AluI AGCT 5 cut(s) 149, 215, 290, 410, 476
Alw26I GTCTC 4 cut(s) 65, 252, 326, 513
AlwI GGATC 2 cut(s) 217, 478
ApeKI GCWGC 3 cut(s) 146, 287, 407
ApoI RAATTY 1 cut(s) 277
AspLEI GCGC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 158, 299, 419
BcoDI GTCTC 4 cut(s) 65, 252, 326, 513
BfaI CTAG 2 cut(s) 200, 461
BfmI CTRYAG 2 cut(s) 210, 471
BfuAI ACCTGC 2 cut(s) 125, 386
BisI GCNGC 3 cut(s) 147, 288, 408
BlsI GCNGC 3 cut(s) 148, 289, 409
BmsI GCATC 3 cut(s) 27, 196, 457
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 238, 499
BsaI GGTCTC 2 cut(s) 65, 326
BsaJI CCNNGG 2 cut(s) 233, 494
Bse1I ACTGG 1 cut(s) 34
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 233, 494
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 158, 299, 419
BshVI ATCGAT 1 cut(s) 21
BsmAI GTCTC 4 cut(s) 65, 252, 326, 513
Bso31I GGTCTC 2 cut(s) 65, 326
Bsp143I GATC 2 cut(s) 222, 483
BspDI ATCGAT 1 cut(s) 21
BspMI ACCTGC 2 cut(s) 125, 386
BspPI GGATC 2 cut(s) 217, 478
BspTNI GGTCTC 2 cut(s) 65, 326
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 233, 494
BssMI GATC 2 cut(s) 222, 483
BssNI GRCGYC 2 cut(s) 238, 499
BssT1I CCWWGG 2 cut(s) 233, 494
Bst6I CTCTTC 2 cut(s) 172, 433
BstACI GRCGYC 2 cut(s) 238, 499
BstC8I GCNNGC 2 cut(s) 217, 478
BstDEI CTNAG 2 cut(s) 128, 389
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 2 cut(s) 225, 486
BstMAI GTCTC 4 cut(s) 65, 252, 326, 513
BstMBI GATC 2 cut(s) 222, 483
BstNSI RCATGY 2 cut(s) 146, 407
BstSFI CTRYAG 2 cut(s) 210, 471
BstV1I GCAGC 3 cut(s) 158, 299, 419
BstX2I RGATCY 2 cut(s) 222, 483
BstYI RGATCY 2 cut(s) 222, 483
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BveI ACCTGC 2 cut(s) 125, 386
Cac8I GCNNGC 2 cut(s) 217, 478
CfoI GCGC 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 2 cut(s) 227, 488
CviAII CATG 2 cut(s) 143, 404
CviJI RGCY 7 cut(s) 77, 149, 215, 290, 338, 410, 476
CviKI_1 RGCY 7 cut(s) 77, 149, 215, 290, 338, 410, 476
DdeI CTNAG 2 cut(s) 128, 389
DpnI GATC 2 cut(s) 224, 485
DpnII GATC 2 cut(s) 222, 483
Eam1104I CTCTTC 2 cut(s) 172, 433
EarI CTCTTC 2 cut(s) 172, 433
Eco130I CCWWGG 2 cut(s) 233, 494
Eco31I GGTCTC 2 cut(s) 65, 326
Eco32I GATATC 2 cut(s) 103, 364
Eco57I CTGAAG 6 cut(s) 28, 75, 263, 289, 336, 524
EcoRV GATATC 2 cut(s) 103, 364
EcoT14I CCWWGG 2 cut(s) 233, 494
ErhI CCWWGG 2 cut(s) 233, 494
FaeI CATG 2 cut(s) 146, 407
FaiI YATR 8 cut(s) 144, 159, 212, 272, 405, 420, 473, 533
FatI CATG 2 cut(s) 142, 403
FblI GTMKAC 2 cut(s) 139, 400
Fnu4HI GCNGC 3 cut(s) 147, 288, 408
Fsp4HI GCNGC 3 cut(s) 147, 288, 408
FspBI CTAG 2 cut(s) 200, 461
GlaI GCGC 1 cut(s) 17
GluI GCNGC 3 cut(s) 147, 288, 408
HgaI GACGC 2 cut(s) 227, 488
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 2 cut(s) 238, 499
Hin1II CATG 2 cut(s) 146, 407
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 6 cut(s) 85, 188, 229, 346, 449, 490
Hpy166II GTNNAC 2 cut(s) 140, 401
Hpy188I TCNGA 4 cut(s) 47, 243, 308, 504
Hpy188III TCNNGA 4 cut(s) 226, 257, 487, 518
Hpy8I GTNNAC 2 cut(s) 140, 401
HpyAV CCTTC 6 cut(s) 50, 52, 110, 311, 313, 371
HpyCH4V TGCA 5 cut(s) 146, 219, 287, 407, 480
HpyF3I CTNAG 2 cut(s) 128, 389
Hsp92I GRCGYC 2 cut(s) 238, 499
Hsp92II CATG 2 cut(s) 146, 407
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 222, 483
LpnPI CCDG 8 cut(s) 15, 80, 120, 239, 276, 341, 381, 500
Lsp1109I GCAGC 3 cut(s) 158, 299, 419
LweI GCATC 3 cut(s) 27, 196, 457
MaeI CTAG 2 cut(s) 200, 461
MaeIII GTNAC 2 cut(s) 161, 422
MalI GATC 2 cut(s) 224, 485
MboI GATC 2 cut(s) 222, 483
MboII GAAGA 4 cut(s) 80, 159, 341, 420
MflI RGATCY 2 cut(s) 222, 483
MluCI AATT 3 cut(s) 249, 277, 510
MlyI GAGTC 2 cut(s) 223, 484
MnlI CCTC 2 cut(s) 175, 436
MseI TTAA 3 cut(s) 248, 264, 525
MspA1I CMGCKG 1 cut(s) 290
NdeII GATC 2 cut(s) 222, 483
NlaIII CATG 2 cut(s) 146, 407
NspI RCATGY 2 cut(s) 146, 407
PfeI GAWTC 4 cut(s) 85, 188, 346, 449
PkrI GCNGC 3 cut(s) 148, 289, 409
PleI GAGTC 2 cut(s) 223, 484
PpsI GAGTC 2 cut(s) 223, 484
PsuI RGATCY 2 cut(s) 222, 483
PvuII CAGCTG 1 cut(s) 290
SaqAI TTAA 3 cut(s) 248, 264, 525
SatI GCNGC 3 cut(s) 147, 288, 408
Sau3AI GATC 2 cut(s) 222, 483
SchI GAGTC 2 cut(s) 223, 484
SfaNI GCATC 3 cut(s) 27, 196, 457
SfcI CTRYAG 2 cut(s) 210, 471
Sse9I AATT 3 cut(s) 249, 277, 510
SspMI CTAG 2 cut(s) 200, 461
StyI CCWWGG 2 cut(s) 233, 494
TaqI TCGA 5 cut(s) 21, 204, 256, 465, 517
TasI AATT 3 cut(s) 249, 277, 510
TfiI GAWTC 4 cut(s) 85, 188, 346, 449
Tru1I TTAA 3 cut(s) 248, 264, 525
Tru9I TTAA 3 cut(s) 248, 264, 525
TseI GCWGC 3 cut(s) 146, 287, 407
TspDTI ATGAA 3 cut(s) 17, 80, 341
XapI RAATTY 1 cut(s) 277
XceI RCATGY 2 cut(s) 146, 407
XmiI GTMKAC 2 cut(s) 139, 400
XspI CTAG 2 cut(s) 200, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.