pycom14g11510

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000204
Physical Location & Seq
Forward (+)
14603788 .. 14604709
922 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g11510.4

Sequence Viewer

Length: 720 bp
ATGGAGGTGTTGCAACAATACTTTGGCAGTACGGAGGAATCTAGCCCGAAGGAGGATGCGAGTGGAGACGACATCTGTTTCATGGATGTGGATGTCGTCAAAGGGGTAGATTTTCTGGAAGCTTGGAAGAAGATTGAAGCATGGTTTAAGGATGAAGCGGTAAAAGACGAGCTACTACATGAAGTCGTTTTTGGCCTTTGGAGAATATGGAAATGTCGGAAGGCATTGTCTTTTGAAGGTACGTATAAAACTCCAAAGGATGATCGATCGGAGAAGGAGCACTGCGGGAAACCTTCAACGTCGGTTTTCGCTGGGCAACAAGTTCGATGGAAACGTCCTAGTTTTGGGACTTTGAAAATTAACTGTGATGCGGTATGGCATGGGAAATCAATGTTAGGTGGCTATGGGTCGGTGGTGCGAGATTTTGCGGGACTTTTGCACATGGCTGGTGGGGTGAGAGGTGAGTTTTTCAATGATGCAGCTATGGTAGAAGTGGCTGCAATTCGTGCAGCTTTGGTAATGTGTAGGGACATGCATTATGAGATGGTAGAGATAGAGGAGGTGAAGTTTATGTATGTTCAGCGGAGTGGCAACCTTGCTGTCCATGCAATGGCTTCCTATATTACCTCGCGTGGTGGTTCGTTCCTGTGGGATGCTTATGATCTTGAATTTCTTTTTAATATTTTTGCAGAAGATGTAAACATTTCTATTAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

240

Amino Acids

27.16

Weight (kDa)

5.23

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 610
AccII CGCG 1 cut(s) 631
AciI CCGC 5 cut(s) 158, 285, 371, 428, 583
AcsI RAATTY 2 cut(s) 668, 714
AfaI GTAC 2 cut(s) 31, 241
AfiI CCNNNNNNNGG 3 cut(s) 52, 344, 610
AgsI TTSAA 6 cut(s) 137, 236, 297, 355, 472, 668
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 4 cut(s) 122, 172, 482, 512
AluI AGCT 4 cut(s) 122, 172, 482, 512
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 60
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 479, 497, 509
ApoI RAATTY 2 cut(s) 668, 714
AsuHPI GGTGA 3 cut(s) 466, 473, 574
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 3 cut(s) 484, 491, 521
BccI CCATC 2 cut(s) 321, 538
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 2 cut(s) 42, 339
BisI GCNGC 3 cut(s) 480, 498, 510
BlsI GCNGC 3 cut(s) 481, 499, 511
BmsI GCATC 4 cut(s) 46, 358, 466, 643
Bsa29I ATCGAT 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 344, 610
Bse3DI GCAATG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 265
BseGI GGATG 6 cut(s) 61, 91, 97, 157, 265, 658
BseLI CCNNNNNNNGG 3 cut(s) 52, 344, 610
BseMI GCAATG 1 cut(s) 615
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 3 cut(s) 484, 491, 521
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 631
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 282
BslFI GGGAC 3 cut(s) 361, 444, 542
BslI CCNNNNNNNGG 3 cut(s) 52, 344, 610
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 3 cut(s) 361, 444, 542
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 262, 266, 661
BspACI CCGC 5 cut(s) 158, 285, 371, 428, 583
BspANI GGCC 1 cut(s) 195
BspDI ATCGAT 1 cut(s) 265
BspFNI CGCG 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 615
BssMI GATC 3 cut(s) 262, 266, 661
Bst4CI ACNGT 1 cut(s) 365
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 243
BstF5I GGATG 6 cut(s) 61, 91, 97, 157, 265, 658
BstFNI CGCG 1 cut(s) 631
BstKTI GATC 3 cut(s) 265, 269, 664
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 3 cut(s) 262, 266, 661
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 506, 605
BstNSI RCATGY 1 cut(s) 535
BstSNI TACGTA 1 cut(s) 243
BstUI CGCG 1 cut(s) 631
BstV1I GCAGC 3 cut(s) 484, 491, 521
Bsu15I ATCGAT 1 cut(s) 265
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 265
BtsCI GGATG 6 cut(s) 61, 91, 97, 157, 265, 658
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 265
Csp6I GTAC 2 cut(s) 30, 240
CviAII CATG 7 cut(s) 82, 141, 179, 380, 442, 532, 605
CviQI GTAC 2 cut(s) 30, 240
DpnI GATC 3 cut(s) 264, 268, 663
DpnII GATC 3 cut(s) 262, 266, 661
Eco105I TACGTA 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 7 cut(s) 85, 144, 182, 383, 445, 535, 608
FaqI GGGAC 3 cut(s) 361, 444, 542
FatI CATG 7 cut(s) 81, 140, 178, 379, 441, 531, 604
FauI CCCGC 2 cut(s) 278, 421
Fnu4HI GCNGC 3 cut(s) 480, 498, 510
FokI GGATG 6 cut(s) 68, 98, 104, 164, 272, 665
Fsp4HI GCNGC 3 cut(s) 480, 498, 510
FspBI CTAG 2 cut(s) 42, 339
GluI GCNGC 3 cut(s) 480, 498, 510
GsaI CCCAGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 7 cut(s) 85, 144, 182, 383, 445, 535, 608
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 38
HphI GGTGA 3 cut(s) 466, 473, 574
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 219, 271
Hpy188III TCNNGA 2 cut(s) 116, 665
Hpy8I GTNNAC 1 cut(s) 700
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 5 cut(s) 43, 214, 230, 268, 303
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 3 cut(s) 242, 299, 334
HpyCH4V TGCA 8 cut(s) 13, 439, 479, 500, 509, 535, 608, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 605
HpySE526I ACGT 3 cut(s) 242, 299, 334
Hsp92II CATG 7 cut(s) 85, 144, 182, 383, 445, 535, 608
Kzo9I GATC 3 cut(s) 262, 266, 661
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 4 cut(s) 101, 297, 432, 659
Lsp1109I GCAGC 3 cut(s) 484, 491, 521
LweI GCATC 4 cut(s) 46, 358, 466, 643
MaeI CTAG 2 cut(s) 42, 339
MaeII ACGT 3 cut(s) 242, 299, 334
MalI GATC 3 cut(s) 264, 268, 663
MboI GATC 3 cut(s) 262, 266, 661
MboII GAAGA 3 cut(s) 139, 142, 704
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 4 cut(s) 357, 501, 668, 714
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 6 cut(s) 28, 46, 452, 550, 553, 637
Mph1103I ATGCAT 1 cut(s) 537
MseI TTAA 4 cut(s) 147, 360, 678, 718
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 583
MvnI CGCG 1 cut(s) 631
MwoI GCNNNNNNNGC 2 cut(s) 506, 605
NdeII GATC 3 cut(s) 262, 266, 661
NlaIII CATG 7 cut(s) 85, 144, 182, 383, 445, 535, 608
NsiI ATGCAT 1 cut(s) 537
NspI RCATGY 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 610
PkrI GCNGC 3 cut(s) 481, 499, 511
Ple19I CGATCG 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 311
PvuI CGATCG 1 cut(s) 269
RsaI GTAC 2 cut(s) 31, 241
RsaNI GTAC 2 cut(s) 30, 240
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 4 cut(s) 147, 360, 678, 718
SatI GCNGC 3 cut(s) 480, 498, 510
Sau3AI GATC 3 cut(s) 262, 266, 661
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 4 cut(s) 46, 358, 466, 643
SmiMI CAYNNNNRTG 1 cut(s) 86
SnaBI TACGTA 1 cut(s) 243
Sse9I AATT 4 cut(s) 357, 501, 668, 714
SsiI CCGC 5 cut(s) 158, 285, 371, 428, 583
SspI AATATT 1 cut(s) 682
SspMI CTAG 2 cut(s) 42, 339
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 3 cut(s) 245, 302, 337
TaqI TCGA 2 cut(s) 265, 325
TasI AATT 4 cut(s) 357, 501, 668, 714
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 4 cut(s) 147, 360, 678, 718
Tru9I TTAA 4 cut(s) 147, 360, 678, 718
TscAI CASTG 1 cut(s) 287
TseI GCWGC 3 cut(s) 479, 497, 509
TspDTI ATGAA 3 cut(s) 70, 168, 195
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 610
XapI RAATTY 2 cut(s) 668, 714
XceI RCATGY 1 cut(s) 535
XspI CTAG 2 cut(s) 42, 339
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.