FvH4_3g03751

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000204
Physical Location & Seq
Forward (+)
2101296 .. 2102656
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03751.t1

Sequence Viewer

Length: 624 bp
ATGGCTAGGAAAATGTTGGCTTTCTCTAAGATTTTAAGGTTCGAAAAACTAATACAACACCCTGCAGTTTGTGTACTGATCCGGAGTTTGCACAAGGAGTCAATTCCGGTAGCATGGGAGAAACCAAAACTTGGTTGGACTAAGTTGAACTTTGATGGATCATCTAAGGGCAGAGAAGAGAAGGCAAGCATTGGAGGGCTATTTAGAAATCACAAGGCAGAGTTCTTACTTGGATATGCTGAATCCATAGGAAGAGCAAACAGCGGCATTGCAGAACTTGCTGCACTAAGAAGAGGCCTTGAGTTGGTTATGGAAAATGGTTGGAACGATCTATGGCTCGAAGGTGATGCCAAGACATTGCTTCACATCATTGCAAATAGAAAGCAGGTAAGATGTGCAGAAGCACAGAGGCATGTCAGTGAGATAAACTCGATAATTCCGGAACTGAACAATTGTGTTCTGACTCATATTTATAGAGAAGGTAACCGAGCTGCTGATAAATTTGCTCAAATGGGGCATTGGTATCAAAAGCCTCAAATTTGGGAGCACATTCCTCCTGATCAAGTGTTGTCCATCATGCATGAAGATGCTGAGGGTAAGGTTCTTTTTCGTAAAATAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

208

Amino Acids

23.7

Weight (kDa)

9.4

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 50 - 171 1.4e-29 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 131
AccIII TCCGGA 2 cut(s) 81, 439
AciI CCGC 1 cut(s) 264
AclWI GGATC 2 cut(s) 73, 166
AcsI RAATTY 2 cut(s) 500, 537
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 131, 304
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 1 cut(s) 491
AluI AGCT 1 cut(s) 491
Alw21I GWGCWC 1 cut(s) 549
AlwI GGATC 2 cut(s) 73, 166
Aor13HI TCCGGA 2 cut(s) 81, 439
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 2 cut(s) 281, 491
ApoI RAATTY 2 cut(s) 500, 537
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 549
BbvCI CCTCAGC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 268, 478
BccI CCATC 2 cut(s) 149, 581
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BclI TGATCA 1 cut(s) 559
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 3 cut(s) 265, 282, 492
BlsI GCNGC 3 cut(s) 266, 283, 493
BmsI GCATC 2 cut(s) 337, 577
BplI GAGNNNNNCTC 2 cut(s) 413, 445
Bpu10I CCTNAGC 1 cut(s) 591
Bpu14I TTCGAA 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 320
BsaWI WCCGGW 3 cut(s) 81, 106, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 304
Bse3DI GCAATG 3 cut(s) 267, 356, 369
BseAI TCCGGA 2 cut(s) 81, 439
BseLI CCNNNNNNNGG 2 cut(s) 131, 304
BseMI GCAATG 3 cut(s) 267, 356, 369
BseMII CTCAG 1 cut(s) 582
BseXI GCAGC 2 cut(s) 268, 478
BsgI GTGCAG 2 cut(s) 267, 417
BshFI GGCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 3 cut(s) 82, 107, 440
BslI CCNNNNNNNGG 2 cut(s) 131, 304
BsnI GGCC 1 cut(s) 297
Bsp119I TTCGAA 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 549
Bsp13I TCCGGA 2 cut(s) 81, 439
Bsp143I GATC 4 cut(s) 78, 158, 328, 559
BspACI CCGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 583
BspEI TCCGGA 2 cut(s) 81, 439
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 2 cut(s) 73, 166
BspQI GCTCTTC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 42
BsrDI GCAATG 3 cut(s) 267, 356, 369
BssMI GATC 4 cut(s) 78, 158, 328, 559
Bst6I CTCTTC 3 cut(s) 171, 247, 286
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 5 cut(s) 27, 141, 165, 287, 591
BstEII GGTNACC 1 cut(s) 482
BstKTI GATC 4 cut(s) 81, 161, 331, 562
BstMBI GATC 4 cut(s) 78, 158, 328, 559
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 268, 478
BsuRI GGCC 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 424
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 74
CviAII CATG 4 cut(s) 114, 413, 577, 581
CviJI RGCY 7 cut(s) 5, 20, 199, 297, 337, 491, 532
CviKI_1 RGCY 7 cut(s) 5, 20, 199, 297, 337, 491, 532
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 5 cut(s) 27, 141, 165, 287, 591
DpnI GATC 4 cut(s) 80, 160, 330, 561
DpnII GATC 4 cut(s) 78, 158, 328, 559
Eam1104I CTCTTC 3 cut(s) 171, 247, 286
EarI CTCTTC 3 cut(s) 171, 247, 286
Eco147I AGGCCT 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 582
FaeI CATG 4 cut(s) 117, 416, 580, 584
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 4 cut(s) 113, 412, 576, 580
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 265, 282, 492
Fsp4HI GCNGC 3 cut(s) 265, 282, 492
FspBI CTAG 1 cut(s) 6
GluI GCNGC 3 cut(s) 265, 282, 492
HaeIII GGCC 1 cut(s) 297
HapII CCGG 3 cut(s) 82, 107, 440
Hin1II CATG 4 cut(s) 117, 416, 580, 584
HinfI GANTC 3 cut(s) 98, 242, 463
HpaII CCGG 3 cut(s) 82, 107, 440
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 3 cut(s) 82, 440, 557
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 175, 335, 473
HpyCH4V TGCA 7 cut(s) 65, 91, 272, 284, 374, 398, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 5 cut(s) 27, 141, 165, 287, 591
Hsp92II CATG 4 cut(s) 117, 416, 580, 584
Kpn2I TCCGGA 2 cut(s) 81, 439
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 78, 158, 328, 559
LguI GCTCTTC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 6 cut(s) 75, 95, 120, 371, 453, 570
Lsp1109I GCAGC 2 cut(s) 268, 478
LweI GCATC 2 cut(s) 337, 577
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 482
MalI GATC 4 cut(s) 80, 160, 330, 561
MboI GATC 4 cut(s) 78, 158, 328, 559
MboII GAAGA 4 cut(s) 188, 264, 303, 596
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 5 cut(s) 102, 435, 451, 500, 537
MlyI GAGTC 2 cut(s) 107, 457
MmeI TCCRAC 2 cut(s) 116, 302
MnlI CCTC 6 cut(s) 188, 287, 402, 543, 564, 586
Mph1103I ATGCAT 1 cut(s) 582
MroI TCCGGA 2 cut(s) 81, 439
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 2 cut(s) 417, 585
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 3 cut(s) 82, 107, 440
MunI CAATTG 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 4 cut(s) 78, 158, 328, 559
NlaIII CATG 4 cut(s) 117, 416, 580, 584
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 1 cut(s) 416
NspV TTCGAA 1 cut(s) 42
PceI AGGCCT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 3 cut(s) 266, 283, 493
PleI GAGTC 2 cut(s) 106, 457
PpsI GAGTC 2 cut(s) 106, 457
PspEI GGTNACC 1 cut(s) 482
PstI CTGCAG 1 cut(s) 67
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 2 cut(s) 417, 585
SapI GCTCTTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 3 cut(s) 265, 282, 492
Sau3AI GATC 4 cut(s) 78, 158, 328, 559
SchI GAGTC 2 cut(s) 107, 457
SduI GDGCHC 1 cut(s) 549
SetI ASST 6 cut(s) 41, 346, 390, 484, 493, 603
SfaNI GCATC 2 cut(s) 337, 577
SfcI CTRYAG 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 417, 585
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 5 cut(s) 102, 435, 451, 500, 537
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 1 cut(s) 264
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 297
TaqI TCGA 3 cut(s) 42, 339, 431
TasI AATT 5 cut(s) 102, 435, 451, 500, 537
TatI WGTACW 1 cut(s) 73
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 424
TseI GCWGC 2 cut(s) 281, 491
TspDTI ATGAA 1 cut(s) 597
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 131
XapI RAATTY 2 cut(s) 500, 537
XceI RCATGY 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.