FvH4_6g31361

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000204
Physical Location & Seq
Forward (+)
24516899 .. 24517862
964 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31361.t1

Sequence Viewer

Length: 444 bp
ATGAGGGTGATGGGGGAAATAGCGTGGTGGTTGAAGACAAACATTGTACATGTATTGCAGCAATGGCTTTGTATTTCCCACGTCCTTTCTGCTTTTCACATAGAGGCAGAGGCTTGTAGAGCTGGAATCCTTCTAGCTCTTTCCCAAGATTGGGATGCTATTGACCTTGAGAGTGCTAACTCATGGATGTACTCTATAAGGATGGTAGTACTAATGCTGGTGGATCAAGTTTATGTCCCCATATCAATCCCTCGGAATCTTGGTTTTTCAGATGTGCTTTCTGCTGAAGCTCAAGCCCTTCGACATGGTCTCATGAAGCTCTCAGAGTCCTCCAATCAAGCTGTCATCATTGAAGGCGACTCTAAAATTCTTCTAGATGTCCTCACTGGTAAAGCACAATGCCCTTGGAGGATCAAATTTTTAGTCCAAGATATACCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.56

Weight (kDa)

5.45

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 66 - 145 2.3e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 231, 419
AcsI RAATTY 2 cut(s) 366, 416
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 3 cut(s) 48, 191, 210
AfiI CCNNNNNNNGG 2 cut(s) 150, 151
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 34, 353
AjiI CACGTC 1 cut(s) 82
AluBI AGCT 5 cut(s) 122, 137, 290, 319, 341
AluI AGCT 5 cut(s) 122, 137, 290, 319, 341
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 2 cut(s) 231, 419
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 2 cut(s) 366, 416
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AsuHPI GGTGA 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 4, 196
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 2 cut(s) 134, 374
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BmcAI AGTACT 1 cut(s) 210
BmgBI CACGTC 1 cut(s) 82
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 188, 276
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 251, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 151
Bse1I ACTGG 1 cut(s) 391
Bse3DI GCAATG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 251, 404
BseGI GGATG 3 cut(s) 160, 192, 207
BseLI CCNNNNNNNGG 2 cut(s) 150, 151
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 150, 151
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 223, 411
BspCNI CTCAG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 312
BspPI GGATC 2 cut(s) 231, 419
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 46
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 2 cut(s) 251, 404
BssMI GATC 2 cut(s) 223, 411
BssT1I CCWWGG 1 cut(s) 404
BstAUI TGTACA 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 3 cut(s) 160, 192, 207
BstKTI GATC 2 cut(s) 226, 414
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 223, 411
BstMWI GCNNNNNNNGC 2 cut(s) 64, 119
BstNSI RCATGY 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 3 cut(s) 160, 192, 207
BtsIMutI CAGTG 1 cut(s) 384
CciI TCATGA 1 cut(s) 312
Csp6I GTAC 3 cut(s) 47, 190, 209
CviAII CATG 4 cut(s) 50, 183, 305, 313
CviJI RGCY 8 cut(s) 67, 113, 122, 137, 290, 296, 319, 341
CviKI_1 RGCY 8 cut(s) 67, 113, 122, 137, 290, 296, 319, 341
CviQI GTAC 3 cut(s) 47, 190, 209
DdeI CTNAG 1 cut(s) 322
DpnI GATC 2 cut(s) 225, 413
DpnII GATC 2 cut(s) 223, 411
Eco130I CCWWGG 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 4 cut(s) 53, 186, 308, 316
FaiI YATR 9 cut(s) 51, 101, 184, 197, 234, 242, 306, 314, 434
FaqI GGGAC 1 cut(s) 221
FatI CATG 4 cut(s) 49, 182, 304, 312
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 3 cut(s) 167, 199, 214
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 2 cut(s) 134, 374
GluI GCNGC 1 cut(s) 59
Hin1II CATG 4 cut(s) 53, 186, 308, 316
HinfI GANTC 4 cut(s) 126, 256, 326, 359
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 255, 271, 325
Hpy188III TCNNGA 2 cut(s) 313, 374
HpyAV CCTTC 3 cut(s) 140, 308, 347
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 119
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 4 cut(s) 53, 186, 308, 316
Kzo9I GATC 2 cut(s) 223, 411
LpnPI CCDG 3 cut(s) 108, 203, 372
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 145
MaeI CTAG 2 cut(s) 134, 374
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 225, 413
MboI GATC 2 cut(s) 223, 411
MboII GAAGA 2 cut(s) 46, 362
MluCI AATT 2 cut(s) 366, 416
MlyI GAGTC 2 cut(s) 335, 353
MnlI CCTC 6 cut(s) 97, 103, 261, 340, 392, 402
MwoI GCNNNNNNNGC 2 cut(s) 64, 119
NdeII GATC 2 cut(s) 223, 411
NlaIII CATG 4 cut(s) 53, 186, 308, 316
NspI RCATGY 1 cut(s) 53
PagI TCATGA 1 cut(s) 312
PciI ACATGT 1 cut(s) 49
PfeI GAWTC 2 cut(s) 126, 256
PflFI GACNNNGTC 1 cut(s) 306
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 2 cut(s) 334, 353
PpsI GAGTC 2 cut(s) 334, 353
PscI ACATGT 1 cut(s) 49
PsyI GACNNNGTC 1 cut(s) 306
RsaI GTAC 3 cut(s) 48, 191, 210
RsaNI GTAC 3 cut(s) 47, 190, 209
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 223, 411
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 2 cut(s) 335, 353
SetI ASST 8 cut(s) 84, 124, 139, 168, 292, 321, 343, 439
SfaNI GCATC 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 167, 291
SmoI CTYRAG 2 cut(s) 167, 291
Sse9I AATT 2 cut(s) 366, 416
SspMI CTAG 2 cut(s) 134, 374
StyI CCWWGG 1 cut(s) 404
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 301
TasI AATT 2 cut(s) 366, 416
TatI WGTACW 3 cut(s) 46, 189, 208
TfiI GAWTC 2 cut(s) 126, 256
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 391
Tth111I GACNNNGTC 1 cut(s) 306
XapI RAATTY 2 cut(s) 366, 416
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 1 cut(s) 53
XspI CTAG 2 cut(s) 134, 374
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.