Prupe.1G509200_v2.0.a1

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000204
Physical Location & Seq
Reverse (-)
41971249 .. 41972224
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G509200.1

Sequence Viewer

Length: 606 bp
ATGTCATTCACAGTCAACATATGGAGGTGTCAAATTGGACTAGTCTATTGGAAAATCAATTTCACTCATTCTCAGAAGTCCAAAGGTGAGCTTGCCATTAAATGGAAACCACCACCCCTCGATTGGATTAAATTGAACTTTGATGGCTCGATGTGTGGTAACCTAGCTGCCATTGGTTTCGTTATTCGGGACTGGAATGGTAATGTTTGGCTTGCCGGAGCTAAGAATTCGGGTCACATTTCGATAAATGTTACGGAATGTTTGGAGCTTCGTGATGGTCTCGCCCATGCAATCCACAATGGTTGGCGCAAAGTTTTAGCTGAAGGAGATTCCAAACCCATTATTGACTGTATTAACAACAAAGTTTTAGTTCCTTGGAGTATTCATCTCATAGTACAAGATATAAGGCTGTTAAGTTCTTACTGCGAAGAGATTTCCTTCCAGCATATCTTCCGGAAAGCTAACTTCACTGCCGACGCTTTAGCTAATTTAGGTCATTCTCTGAACCCTTCCCACCTTTGGGAGCGAGGGATTCCTTTAGGTTGCTCTGCTCTGTTTTATTTTGATTTAGTTGGGCCTGCATGCTCTCGTAGCTTCCGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

202

Amino Acids

22.66

Weight (kDa)

8.7

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 453
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 4 cut(s) 102, 123, 519, 520
AgsI TTSAA 1 cut(s) 136
AhlI ACTAGT 1 cut(s) 40
AluBI AGCT 8 cut(s) 91, 167, 221, 268, 320, 461, 485, 594
AluI AGCT 8 cut(s) 91, 167, 221, 268, 320, 461, 485, 594
Alw26I GTCTC 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 226
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 98
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 137, 269
BcoDI GTCTC 1 cut(s) 284
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 2 cut(s) 41, 164
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 123, 519, 520
Bse1I ACTGG 1 cut(s) 197
BseAI TCCGGA 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 374
BseLI CCNNNNNNNGG 4 cut(s) 102, 123, 519, 520
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 577
BsiSI CCGG 2 cut(s) 216, 454
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 4 cut(s) 102, 123, 519, 520
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 577
Bso31I GGTCTC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 453
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 13, 350
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 4 cut(s) 93, 213, 579, 583
BstDEI CTNAG 2 cut(s) 72, 222
BstEII GGTNACC 1 cut(s) 158
BstHHI GCGC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 284
BstMWI GCNNNNNNNGC 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 585
BstPI GGTNACC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 577
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 4 cut(s) 93, 213, 579, 583
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 1 cut(s) 485
Csp6I GTAC 1 cut(s) 395
CspCI CAANNNNNGTGG 2 cut(s) 284, 319
CviAII CATG 2 cut(s) 287, 582
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 2 cut(s) 72, 222
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 342
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 2 cut(s) 290, 585
FaiI YATR 7 cut(s) 20, 22, 288, 392, 404, 447, 583
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 286, 581
FauNDI CATATG 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 41, 164
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 577
HapII CCGG 2 cut(s) 216, 454
HgaI GACGC 1 cut(s) 485
HhaI GCGC 1 cut(s) 309
Hin1II CATG 2 cut(s) 290, 585
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 2 cut(s) 329, 532
HpaII CCGG 2 cut(s) 216, 454
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 75, 504
Hpy188III TCNNGA 3 cut(s) 188, 272, 454
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 479
HpyAV CCTTC 3 cut(s) 317, 448, 519
HpyCH4III ACNGT 2 cut(s) 13, 350
HpyCH4V TGCA 2 cut(s) 290, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 591
HpyF3I CTNAG 2 cut(s) 72, 222
Hsp92II CATG 2 cut(s) 290, 585
HspAI GCGC 1 cut(s) 307
Kpn2I TCCGGA 1 cut(s) 453
LmnI GCTCC 3 cut(s) 218, 265, 523
LpnPI CCDG 5 cut(s) 178, 229, 455, 467, 591
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 2 cut(s) 41, 164
MaeIII GTNAC 3 cut(s) 158, 233, 250
MboII GAAGA 2 cut(s) 440, 442
MluCI AATT 5 cut(s) 33, 58, 131, 226, 487
MnlI CCTC 3 cut(s) 18, 128, 521
MroI TCCGGA 1 cut(s) 453
MseI TTAA 4 cut(s) 99, 129, 354, 413
MspI CCGG 2 cut(s) 216, 454
MwoI GCNNNNNNNGC 1 cut(s) 591
NdeI CATATG 1 cut(s) 20
NlaIII CATG 2 cut(s) 290, 585
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 585
PaeI GCATGC 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PfeI GAWTC 2 cut(s) 329, 532
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 575
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
SaqAI TTAA 4 cut(s) 99, 129, 354, 413
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 40
SphI GCATGC 1 cut(s) 585
Sse9I AATT 5 cut(s) 33, 58, 131, 226, 487
SspMI CTAG 2 cut(s) 41, 164
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 13, 350
TaqI TCGA 3 cut(s) 120, 149, 242
TasI AATT 5 cut(s) 33, 58, 131, 226, 487
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 2 cut(s) 329, 532
Tru1I TTAA 4 cut(s) 99, 129, 354, 413
Tru9I TTAA 4 cut(s) 99, 129, 354, 413
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 2 cut(s) 269, 587
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 1 cut(s) 226
XceI RCATGY 1 cut(s) 585
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XspI CTAG 2 cut(s) 41, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.