AT2G33160

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000204
Physical Location & Seq
Forward (+)
14053404 .. 14056246
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33160.1

Sequence Viewer

Length: 1995 bp
ATGGCGTCTAGGGTTCTTCTGATTTTGTGTGTGCCTTCTCTCTTCTTCTTCCTCGCCGCTTCCACGAAGGAATATCCCGGCCAACCAAAAATCTTTGACGTCAGAAACTATGGTGCTCGCGCAGATAGCCAAAGAGATAACGCTTTTGCGTTTACAAAGGCGTGGAACGAAGCTTGCCAATGGAGTTACGGAAGATCAACGGTCTATATTCCTTCCGGAATATTCTATCTCCGTCAAGTAACATTCTCTGGTCCTTGCAAAAGCTCTATAACTTTTTTTATCAGAGGAACTTTATTGGCTCCTCGTAATCCTTACGCCATCAACCAAGAAGAATGGATACTTTTCAAGTACGTCGATAATCTCACTGTTACTGGCGGTGGATTACTTGACGGTCAAGGATCTTATTCTTGGCCTCTCAATGATTGTAACAAAAACACTAATTGTCGTACACTAGCTATGAACATTGGGTTTGCTTTTGTTAAATCATCGAAGATCAACGGTCTAAGGTCCATCAATAGCAAAATGGGGCATTTCAACTTATTCTCCGTTGAGGATTTTAACATTACCGGAGTTACCATCACTGCTCCCGGAGATAGCCCTAATACCGACGGAATCAAGATCGGGAAATCTAGCCATATGCAAATCTACAACGTCACTATCGGAACCGGTGACGATTGTATCGCAATCCTTGACGGAACCAGCAATTTGGATATCTCTGATGTCAGATGCGGACCAGGGCATGGTATTAGTGTCGGGAGTCTCGGGAGATATAAAGAGGAGAAGAACGTCCAGGGCTTAACCGTCAGAAACTCGATTATCAACGGTACCACAGACGGTTTACGTATCAAGACATGGGCTAAGTCCGTATCGCAGATTTCGGTTTCGAATTTCTTGTACGAGAACATCCAAATGATCAATGTTGGAAACCCTATCGTCATTGATCAGCAGTATTGTCCACACGGGCAATGTGATAGTCCTGGAAAGTATGCTTCTCATGTTCAGATAAAAGACGTCAAGTATAACAATATTTGGGGAACTTCCACAAGCAAAGAGGCTTTGAAGATGCAATGTAGTAAAACGTTTCCTTGTCAAGACGTTGAGCTCTCAAATATCAACTTGCACTACGTTGGACGTGACGGTTTAGTCACGGCTTTGTGTGAGAACGTTGGTGGTTCGATTCGTGGCAAGATTGTTCCTGCAAATTGCAGGATAAATCTCTTTCTTCCAAGCAACATCATTACGGATTCAAATTCCACGTTAGAAGACAAGATGCAAGGCATTTTCCAATTGGCAAACACAACACAAACACAGCGGTTCCATCAACTACCTTTATGGATTCTTTGGAGACTTTGGAATAGCAGAAATATCTTGTATTTTCAGCGACGACATGTTCCATGGGAGACTACGTTACAGCTTGCTCAAATGGATCTTCAGGAGTGGAATGAAGCTGTCACACCATCACACATCAACAGCCATGGTACAACAATTCGAAGTCATATCCCTAATTGGAGGCGTCCAACAAATGGGTGGGTCAAGTGCAATGTAGATGGCTCATTTATTAATGGAAACATACCAGGCAAAGGAGGATGGATTGTTCGGGACCACAACGGGAGATATGAGTTTGCGGGACAGGCCATTGGTAACTGCATAGATAATGCTCTAGAGTGTGAATTTCAAGCATTGCTAATGGCCATGCAACATTGTTGGAGTAAAGGATATCGACGCATCTGTTTTGAAGGTGACAACAAGGAGATGTTTGATCTTATAAACGGATTAAAGATGCATTTTGGAGCCTTTAACTGGATTCGAGACATACTATGGTGGGCATCGAAGTTTGAGCAGACACAATTTCAATGGACCAACAGGCAGAACAACAAACCAGCTGACATCCTCGCAAGAACACCACTACAACATCAATTTTTATTTGCTAATCATTTCTGGGTTCCCCGTGTAATAAGTTTTGCTTTACATTGTGATTATACTTCTTCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

664

Amino Acids

74.97

Weight (kDa)

8.79

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 65 - 389 1.8e-92 Glycosyl hydrolases family 28
RVT_3 PF13456 514 - 633 6.9e-32 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1766
AasI GACNNNNNNGTC 1 cut(s) 1142
AatII GACGTC 2 cut(s) 102, 1014
Acc65I GGTACC 1 cut(s) 824
AccB1I GGYRCC 1 cut(s) 824
AccB7I CCANNNNNTGG 2 cut(s) 740, 1523
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 5 cut(s) 57, 375, 729, 1312, 1625
AclI AACGTT 2 cut(s) 1079, 1164
AclWI GGATC 2 cut(s) 406, 1434
AcoI YGGCCR 2 cut(s) 79, 1689
AcsI RAATTY 3 cut(s) 886, 1249, 1670
AcuI CTGAAG 1 cut(s) 1415
AcyI GRCGYC 4 cut(s) 5, 99, 1011, 1513
AfaI GTAC 5 cut(s) 350, 448, 826, 896, 1480
AfiI CCNNNNNNNGG 4 cut(s) 740, 1523, 1580, 1800
AflIII ACRYGT 1 cut(s) 1387
AgeI ACCGGT 1 cut(s) 665
AgsI TTSAA 8 cut(s) 346, 535, 1060, 1248, 1676, 1736, 1853, 1989
AjiI CACGTC 1 cut(s) 1133
AjnI CCWGG 4 cut(s) 733, 789, 976, 1573
AloI GAACNNNNNNTCC 2 cut(s) 1578, 1610
AluBI AGCT 7 cut(s) 173, 264, 455, 1102, 1414, 1448, 1883
AluI AGCT 7 cut(s) 173, 264, 455, 1102, 1414, 1448, 1883
Alw21I GWGCWC 2 cut(s) 118, 1104
Alw26I GTCTC 4 cut(s) 764, 1339, 1394, 1803
AlwI GGATC 2 cut(s) 406, 1434
Ama87I CYCGRG 1 cut(s) 761
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 4 cut(s) 79, 410, 1632, 1689
ApoI RAATTY 3 cut(s) 886, 1249, 1670
AseI ATTAAT 1 cut(s) 1560
AsiGI ACCGGT 1 cut(s) 665
Asp718I GGTACC 1 cut(s) 824
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 5 cut(s) 251, 507, 731, 1600, 1857
AsuC2I CCSGG 2 cut(s) 78, 588
AsuHPI GGTGA 2 cut(s) 680, 1751
AsuII TTCGAA 2 cut(s) 884, 1489
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 5 cut(s) 251, 507, 731, 1600, 1857
BaeI ACNNNNGTAYC 2 cut(s) 661, 694
BalI TGGCCA 1 cut(s) 1691
BanI GGYRCC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 1104
BarI GAAGNNNNNNTAC 2 cut(s) 321, 353
BbsI GAAGAC 1 cut(s) 1269
Bbv12I GWGCWC 2 cut(s) 118, 1104
BccI CCATC 7 cut(s) 326, 518, 584, 1326, 1465, 1541, 1581
BceAI ACGGC 1 cut(s) 1164
BciT130I CCWGG 4 cut(s) 735, 791, 978, 1575
BciVI GTATCC 1 cut(s) 330
BclI TGATCA 2 cut(s) 912, 940
BcnI CCSGG 2 cut(s) 78, 588
BcoDI GTCTC 4 cut(s) 764, 1339, 1394, 1803
BfaI CTAG 4 cut(s) 9, 452, 630, 1661
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 6 cut(s) 78, 588, 735, 791, 978, 1575
Bme18I GGWCC 5 cut(s) 251, 507, 731, 1600, 1857
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 1133
BmgT120I GGNCC 5 cut(s) 251, 507, 731, 1600, 1857
BmiI GGNNCC 8 cut(s) 300, 664, 697, 826, 1316, 1601, 1792, 1944
BmrFI CCNGG 6 cut(s) 78, 588, 735, 791, 978, 1575
BmsI GCATC 6 cut(s) 716, 1053, 1260, 1734, 1770, 1835
BpiI GAAGAC 1 cut(s) 1269
Bpu14I TTCGAA 2 cut(s) 884, 1489
BpuMI CCSGG 2 cut(s) 78, 588
BsaAI YACGTR 1 cut(s) 842
BsaHI GRCGYC 4 cut(s) 5, 99, 1011, 1513
BsaJI CCNNGG 4 cut(s) 734, 790, 1394, 1474
BsaWI WCCGGW 3 cut(s) 215, 566, 665
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 1391, 1421
Bsc4I CCNNNNNNNGG 4 cut(s) 740, 1523, 1580, 1800
Bse118I RCCGGY 1 cut(s) 665
Bse1I ACTGG 2 cut(s) 376, 1805
Bse3DI GCAATG 4 cut(s) 971, 1073, 1546, 1679
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 4 cut(s) 735, 791, 978, 1575
BseDI CCNNGG 4 cut(s) 734, 790, 1394, 1474
BseGI GGATG 3 cut(s) 903, 1592, 1887
BseLI CCNNNNNNNGG 4 cut(s) 740, 1523, 1580, 1800
BseMI GCAATG 4 cut(s) 971, 1073, 1546, 1679
BseNI ACTGG 2 cut(s) 376, 1805
BseRI GAGGAG 2 cut(s) 291, 791
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 4 cut(s) 81, 412, 1634, 1691
BshNI GGYRCC 1 cut(s) 824
BshTI ACCGGT 1 cut(s) 665
BsiHKAI GWGCWC 2 cut(s) 118, 1104
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 5 cut(s) 78, 216, 567, 588, 666
BslFI GGGAC 2 cut(s) 1613, 1641
BslI CCNNNNNNNGG 4 cut(s) 740, 1523, 1580, 1800
BsmAI GTCTC 4 cut(s) 764, 1339, 1394, 1803
BsmFI GGGAC 2 cut(s) 1613, 1641
BsnI GGCC 4 cut(s) 81, 412, 1634, 1691
BsoBI CYCGRG 1 cut(s) 761
Bsp119I TTCGAA 2 cut(s) 884, 1489
Bsp1286I GDGCHC 2 cut(s) 118, 1104
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
Bsp19I CCATGG 2 cut(s) 1394, 1474
BspACI CCGC 5 cut(s) 57, 375, 729, 1312, 1625
BspANI GGCC 4 cut(s) 81, 412, 1634, 1691
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 8 cut(s) 300, 664, 697, 826, 1316, 1601, 1792, 1944
BspPI GGATC 2 cut(s) 406, 1434
BspT104I TTCGAA 2 cut(s) 884, 1489
BspT107I GGYRCC 1 cut(s) 824
BsrDI GCAATG 4 cut(s) 971, 1073, 1546, 1679
BsrFI RCCGGY 1 cut(s) 665
BsrI ACTGG 2 cut(s) 376, 1805
BssAI RCCGGY 1 cut(s) 665
BssECI CCNNGG 4 cut(s) 734, 790, 1394, 1474
BssMI GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
BssNI GRCGYC 4 cut(s) 5, 99, 1011, 1513
BssT1I CCWWGG 2 cut(s) 1394, 1474
Bst2UI CCWGG 4 cut(s) 735, 791, 978, 1575
Bst4CI ACNGT 8 cut(s) 202, 367, 392, 500, 802, 824, 836, 1139
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 4 cut(s) 5, 99, 1011, 1513
BstBAI YACGTR 1 cut(s) 842
BstBI TTCGAA 2 cut(s) 884, 1489
BstC8I GCNNGC 3 cut(s) 118, 175, 1416
BstDEI CTNAG 2 cut(s) 503, 858
BstDSI CCRYGG 2 cut(s) 1394, 1474
BstF5I GGATG 3 cut(s) 903, 1592, 1887
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 8 cut(s) 197, 401, 495, 621, 915, 943, 1429, 1762
BstMAI GTCTC 4 cut(s) 764, 1339, 1394, 1803
BstMBI GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
BstMWI GCNNNNNNNGC 2 cut(s) 126, 1631
BstNI CCWGG 4 cut(s) 735, 791, 978, 1575
BstNSI RCATGY 1 cut(s) 1391
BstSCI CCNGG 6 cut(s) 76, 586, 733, 789, 976, 1573
BstSNI TACGTA 1 cut(s) 842
BstUI CGCG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 1269
BstX2I RGATCY 2 cut(s) 398, 1426
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 398, 1426
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 4 cut(s) 81, 412, 1634, 1691
BtgI CCRYGG 2 cut(s) 1394, 1474
BtrI CACGTC 1 cut(s) 1133
BtsCI GGATG 3 cut(s) 903, 1592, 1887
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 363, 579
Cac8I GCNNGC 3 cut(s) 118, 175, 1416
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 665
Cfr13I GGNCC 5 cut(s) 251, 507, 731, 1600, 1857
CseI GACGC 2 cut(s) 1502, 1731
Csp6I GTAC 5 cut(s) 349, 447, 825, 895, 1479
CspAI ACCGGT 1 cut(s) 665
CviAII CATG 7 cut(s) 740, 852, 995, 1388, 1395, 1475, 1693
CviQI GTAC 5 cut(s) 349, 447, 825, 895, 1479
DdeI CTNAG 2 cut(s) 503, 858
DpnI GATC 8 cut(s) 196, 400, 494, 620, 914, 942, 1428, 1761
DpnII GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
DrdI GACNNNNNNGTC 1 cut(s) 1142
DseDI GACNNNNNNGTC 1 cut(s) 1142
EaeI YGGCCR 2 cut(s) 79, 1689
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Ecl136II GAGCTC 1 cut(s) 1102
Eco105I TACGTA 1 cut(s) 842
Eco130I CCWWGG 2 cut(s) 1394, 1474
Eco24I GRGCYC 1 cut(s) 1104
Eco32I GATATC 2 cut(s) 712, 1718
Eco47I GGWCC 5 cut(s) 251, 507, 731, 1600, 1857
Eco53kI GAGCTC 1 cut(s) 1102
Eco57I CTGAAG 1 cut(s) 1415
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 1102
EcoRII CCWGG 4 cut(s) 733, 789, 976, 1573
EcoRV GATATC 2 cut(s) 712, 1718
EcoT14I CCWWGG 2 cut(s) 1394, 1474
EcoT22I ATGCAT 1 cut(s) 1785
EcoT38I GRGCYC 1 cut(s) 1104
ErhI CCWWGG 2 cut(s) 1394, 1474
FaeI CATG 7 cut(s) 743, 855, 998, 1391, 1398, 1478, 1696
FalI AAGNNNNNCTT 2 cut(s) 1948, 1980
FaqI GGGAC 2 cut(s) 1613, 1641
FatI CATG 7 cut(s) 739, 851, 994, 1387, 1394, 1474, 1692
FauI CCCGC 1 cut(s) 1618
FauNDI CATATG 1 cut(s) 636
FbaI TGATCA 2 cut(s) 912, 940
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 3 cut(s) 890, 1599, 1874
FriOI GRGCYC 1 cut(s) 1104
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 4 cut(s) 9, 452, 630, 1661
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 4 cut(s) 81, 412, 1634, 1691
HapII CCGG 5 cut(s) 78, 216, 567, 588, 666
HgaI GACGC 2 cut(s) 1502, 1731
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 4 cut(s) 5, 99, 1011, 1513
Hin1II CATG 7 cut(s) 743, 855, 998, 1391, 1398, 1478, 1696
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 6 cut(s) 612, 757, 1177, 1244, 1336, 1804
HpaII CCGG 5 cut(s) 78, 216, 567, 588, 666
HphI GGTGA 2 cut(s) 680, 1751
Hpy166II GTNNAC 4 cut(s) 153, 449, 839, 956
Hpy188I TCNGA 8 cut(s) 21, 104, 284, 662, 718, 725, 806, 1002
Hpy8I GTNNAC 4 cut(s) 153, 449, 839, 956
Hpy99I CGWCG 4 cut(s) 356, 611, 1386, 1725
HpyAV CCTTC 4 cut(s) 45, 61, 222, 1730
HpyCH4III ACNGT 8 cut(s) 202, 367, 392, 500, 802, 824, 836, 1139
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 1631
HpyF3I CTNAG 2 cut(s) 503, 858
Hsp92I GRCGYC 4 cut(s) 5, 99, 1011, 1513
Hsp92II CATG 7 cut(s) 743, 855, 998, 1391, 1398, 1478, 1696
HspAI GCGC 1 cut(s) 120
Kpn2I TCCGGA 1 cut(s) 215
KpnI GGTACC 1 cut(s) 828
Ksp22I TGATCA 2 cut(s) 912, 940
Kzo9I GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
LmnI GCTCC 3 cut(s) 304, 589, 1790
LweI GCATC 6 cut(s) 716, 1053, 1260, 1734, 1770, 1835
MaeI CTAG 4 cut(s) 9, 452, 630, 1661
MalI GATC 8 cut(s) 196, 400, 494, 620, 914, 942, 1428, 1761
MboI GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
MfeI CAATTG 1 cut(s) 1286
MflI RGATCY 2 cut(s) 398, 1426
MhlI GDGCHC 2 cut(s) 118, 1104
MlsI TGGCCA 1 cut(s) 1691
MluNI TGGCCA 1 cut(s) 1691
MlyI GAGTC 1 cut(s) 766
MmeI TCCRAC 4 cut(s) 901, 1108, 1541, 1685
Mox20I TGGCCA 1 cut(s) 1691
Mph1103I ATGCAT 1 cut(s) 1785
MroI TCCGGA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 1691
MseI TTAA 6 cut(s) 480, 558, 797, 1560, 1775, 1797
MslI CAYNNNNRTG 1 cut(s) 908
Msp20I TGGCCA 1 cut(s) 1691
MspA1I CMGCKG 2 cut(s) 1312, 1883
MspI CCGG 5 cut(s) 78, 216, 567, 588, 666
MspR9I CCNGG 6 cut(s) 78, 588, 735, 791, 978, 1575
MunI CAATTG 1 cut(s) 1286
MvaI CCWGG 4 cut(s) 735, 791, 978, 1575
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 126, 1631
NciI CCSGG 2 cut(s) 78, 588
NcoI CCATGG 2 cut(s) 1394, 1474
NdeI CATATG 1 cut(s) 636
NdeII GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
NlaIII CATG 7 cut(s) 743, 855, 998, 1391, 1398, 1478, 1696
NlaIV GGNNCC 8 cut(s) 300, 664, 697, 826, 1316, 1601, 1792, 1944
NmuCI GTSAC 6 cut(s) 652, 668, 1133, 1144, 1450, 1739
NsiI ATGCAT 1 cut(s) 1785
NspI RCATGY 1 cut(s) 1391
NspV TTCGAA 2 cut(s) 884, 1489
PciI ACATGT 1 cut(s) 1387
PfeI GAWTC 5 cut(s) 612, 1177, 1244, 1336, 1804
PflMI CCANNNNNTGG 2 cut(s) 740, 1523
PfoI TCCNGGA 2 cut(s) 586, 976
PinAI ACCGGT 1 cut(s) 665
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 765
Ppu21I YACGTR 1 cut(s) 842
PscI ACATGT 1 cut(s) 1387
PshBI ATTAAT 1 cut(s) 1560
PsiI TTATAA 1 cut(s) 1766
Psp124BI GAGCTC 1 cut(s) 1104
Psp1406I AACGTT 2 cut(s) 1079, 1164
Psp6I CCWGG 4 cut(s) 733, 789, 976, 1573
PspGI CCWGG 4 cut(s) 733, 789, 976, 1573
PspN4I GGNNCC 8 cut(s) 300, 664, 697, 826, 1316, 1601, 1792, 1944
PspPI GGNCC 5 cut(s) 251, 507, 731, 1600, 1857
PsuI RGATCY 2 cut(s) 398, 1426
PvuII CAGCTG 1 cut(s) 1883
RsaI GTAC 5 cut(s) 350, 448, 826, 896, 1480
RsaNI GTAC 5 cut(s) 349, 447, 825, 895, 1479
RseI CAYNNNNRTG 1 cut(s) 908
SacI GAGCTC 1 cut(s) 1104
SaqAI TTAA 6 cut(s) 480, 558, 797, 1560, 1775, 1797
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 8 cut(s) 194, 398, 492, 618, 912, 940, 1426, 1759
Sau96I GGNCC 5 cut(s) 251, 507, 731, 1600, 1857
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 6 cut(s) 78, 588, 735, 791, 978, 1575
SduI GDGCHC 2 cut(s) 118, 1104
SfaNI GCATC 6 cut(s) 716, 1053, 1260, 1734, 1770, 1835
SfuI TTCGAA 2 cut(s) 884, 1489
SinI GGWCC 5 cut(s) 251, 507, 731, 1600, 1857
SmiMI CAYNNNNRTG 1 cut(s) 908
SnaBI TACGTA 1 cut(s) 842
SsiI CCGC 5 cut(s) 57, 375, 729, 1312, 1625
SspI AATATT 2 cut(s) 222, 1027
SspMI CTAG 4 cut(s) 9, 452, 630, 1661
SstI GAGCTC 1 cut(s) 1104
StyD4I CCNGG 6 cut(s) 76, 586, 733, 789, 976, 1573
StyI CCWWGG 2 cut(s) 1394, 1474
TaaI ACNGT 8 cut(s) 202, 367, 392, 500, 802, 824, 836, 1139
TaqI TCGA 9 cut(s) 354, 488, 812, 884, 1175, 1489, 1720, 1807, 1829
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 5 cut(s) 612, 1177, 1244, 1336, 1804
Tru1I TTAA 6 cut(s) 480, 558, 797, 1560, 1775, 1797
Tru9I TTAA 6 cut(s) 480, 558, 797, 1560, 1775, 1797
TscAI CASTG 2 cut(s) 370, 586
TseFI GTSAC 6 cut(s) 652, 668, 1133, 1144, 1450, 1739
Tsp45I GTSAC 6 cut(s) 652, 668, 1133, 1144, 1450, 1739
TspDTI ATGAA 2 cut(s) 473, 1458
TspGWI ACGGA 8 cut(s) 204, 221, 535, 624, 708, 853, 1256, 1785
TspRI CASTG 2 cut(s) 370, 586
Van91I CCANNNNNTGG 2 cut(s) 740, 1523
VpaK11BI GGWCC 5 cut(s) 251, 507, 731, 1600, 1857
VspI ATTAAT 1 cut(s) 1560
XapI RAATTY 3 cut(s) 886, 1249, 1670
XbaI TCTAGA 1 cut(s) 1660
XceI RCATGY 1 cut(s) 1391
XcmI CCANNNNNNNNNTGG 1 cut(s) 1524
XspI CTAG 4 cut(s) 9, 452, 630, 1661
ZraI GACGTC 2 cut(s) 100, 1012
Zsp2I ATGCAT 1 cut(s) 1785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.