Rorug02G0374300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000204
Physical Location & Seq
Forward (+)
47712564 .. 47717284
4721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0374300.1

Sequence Viewer

Length: 2310 bp
ATGGGAATTAGAGGGCAATCAACAGCAGAAAGGAGAGAAAAGACAGTGGCCCTGGCAATAGACAAGGACAAAGGAAGTCAATATGCTATCAAATGGGTTGTTGATCAATTTCTTACCAGGGGCCAAGCTCTCACATTGCTCCATGTTACACGCAAAACAAATCCTGCTCCCAACCAAACTTTGTCTGCAGCTGGGGGGACGGTTTTGATCTGTGACGTGACACACGACTCTCAATCCGAAGAGATGTTTCTTCCATTCCGCGCTTATTGCTCAAAAAGGAATATAATATGCAATGAAGTCACAGTTGAGGATACAGATGTCCCAAAAGCATTGATCAAATACGTTGTGGCCAATTCAATTGAGATTTTGGTACTTGGTTCACCATCAAGATCCGGCCTTTTCAAAAGATTCAGAACCACAGATGTTCCAAGCATTGTGTTGAAAGGGGCACCGGATTTTTGCAGTGTGTATGTAGTTGGCAAAGAAAAGCTCTCAAATGTCCGAACAGCTACCAGTACACCACGACTAAAAGCTGCTCCCTCATGTAATCAAATGCAGCACCAACCCTGCAAAGTTTCTGAATCAAATGATACACGAACGATGAGCTACCGGCAAGCTAGAGAATCAGAGAGCACACGTTACCACCCCCCTAGCAAGCCAGATGACTTTGAAATCAAGTCACCATTCACAAGAGGAAACTTGGCAATGAACAAATCATATCAGCTCTCACCAGAAACTGATATATCATACGTCGGTAGTGGCAAGCCAAACATGGATAACATGTTTCCTTCTTTCTATGATGGTTTAGAATCAGGAATTAGCGCTCAATATTCAACCAACTCAGAGTGGGAGAACAGAAGCTCCACGTCGACATCTTACTCAGGAACTAAGTTTATTGACATGAGCTCAGCACAAAATGAATTTTCCTCAGCTTCAATTGAAAGTCGAAAGTCCTGTCACTCACAGAATGTGGATGAAGAAATGGAAGCTGAGATGAGGAAGCTGAGGCTAGAGCTCAAGCAAACAATGGACATGTACAATACCGTCTGCAAGGAGGCTCTCTCTCCAGAACACAAGGACATGGAACGTAACCGATGGAAATTGGAAGAAAAAAAGAGATTGGAAGAGGCACAACTAGCTGAGGAAGTTGCATTGGCACTTGTACAGAGAGAAAAAGCGAATCATAAGGCAGCCATTGAGGCAGCAGAAGCAGCTCAAAGGATTGCTGAATGGGAATCACAAAAAAGGAGGAATGCAGAACAGAAAGCCCTTAAAGAAGCCAAAGAGAGAAAGAAGGCATCAGAAGCAAGGGCCTGTGATATCAGTTATAGAAAATACACAATTGAGGAAATTGAATCAGCAACAAATAATTTTTCGATATCTTGCAAGATTGGAGAAGGAGGTTATGGTCCAGTTTACAAAGGGGAACTGGACCACACACCAGTGGCAATAAAAGCTCTGCGTCCAGATGCAGCTCAAGGACAGTCACAGTTCCAGCAAGAGGTTAAACTATTGAGTGGCATGCGACATCCGAACATGGTTCTCCTTCTTGGAGCCTGTCCAGATTATGGTTGCCTGGTTTATGAGTACATGGCTAATGGGAGCTTAGAAGATCGTATCTTCAAGCGAGGTAACACCCCAGTTATTCCTTGGCAACTAAGGTTCAGAATCGCTGCTGAAATTTGCACTGGGCTTTTGTTTCTTCATCAAACCAAGCCAGAGCCCCTAGTACACCGTGACCTCAAACCCGCTAACATTTTGCTAGACCATAACTATGTTAGCAAGATTAGTGATGTAGGTTTGCCCAGACTTGTCCCTCCATCAGTAGCTGATTCTATCACTCAGTATCACATTACATCAGCAGCCGGAACATTCTGTTATATTGATCCAGAGTATCAGCAAACTGGTATGCTGGGAAGAAAATCTGATGTCTACTCACTTGGGGTTATGCTTTTACAACTAATCACAGCCAAGTCACCAATGGGTTTGACCTATCATGTTGAGAAAGCTATTGAGGAAGGGACTTTCACTAAGATGCTTGACCCTGCTGTTCCTGACTGGCCAGTTGAGGAAACCTTAGAGTTTGCCAAGCTAGCTTTACAGTGTGCTCAAATGAAACGAAAAGACAGACCGGATCTTGGGAAGGTTGTGCTACCTGAGTTTAACAGATTGAGAGCATTCGCCGAAGATAGCATGAATTCTGTCATGCCGGGTGGTGGTAAAGAACTCTTATCAAGACAAGACCCGATTTCCACAAGACAAGATGTGATCAGTGATCCCAATCTACCGCATTCTGGATATGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

769

Amino Acids

86.1

Weight (kDa)

6.95

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 14 - 159 2e-09 Universal stress protein family
PK_Tyr_Ser-Thr PF07714 460 - 716 9.9e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 461 - 714 3.4e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 1568
AccI GTMKAC 2 cut(s) 869, 1932
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 259, 1749, 2288
AclWI GGATC 4 cut(s) 384, 1880, 2142, 2270
AcoI YGGCCR 2 cut(s) 348, 2060
AcsI RAATTY 3 cut(s) 920, 1680, 2197
AfaI GTAC 6 cut(s) 372, 517, 1037, 1164, 1589, 1731
AfeI AGCGCT 1 cut(s) 823
AfiI CCNNNNNNNGG 5 cut(s) 1501, 1568, 2138, 2216, 2294
AflIII ACRYGT 3 cut(s) 635, 780, 1032
AgsI TTSAA 9 cut(s) 357, 403, 442, 671, 834, 936, 941, 1355, 1624
AjiI CACGTC 2 cut(s) 217, 867
AjnI CCWGG 3 cut(s) 51, 116, 1575
AleI CACNNNNGTG 1 cut(s) 1442
AloI GAACNNNNNNTCC 2 cut(s) 845, 877
Alw21I GWGCWC 4 cut(s) 635, 908, 1017, 2110
AlwI GGATC 4 cut(s) 384, 1880, 2142, 2270
AlwNI CAGNNNCTG 2 cut(s) 737, 1829
Aor51HI AGCGCT 1 cut(s) 823
AoxI GGCC 6 cut(s) 48, 121, 348, 394, 1311, 2060
ApeKI GCWGC 9 cut(s) 188, 533, 556, 1190, 1202, 1211, 1472, 1673, 1862
ApoI RAATTY 3 cut(s) 920, 1680, 2197
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
AspLEI GCGC 2 cut(s) 263, 824
AspS9I GGNCC 5 cut(s) 49, 121, 1311, 1409, 1432
AsuC2I CCSGG 1 cut(s) 2211
AsuHPI GGTGA 4 cut(s) 372, 672, 720, 1968
AsuNHI GCTAGC 1 cut(s) 2092
AvaII GGWCC 2 cut(s) 1409, 1432
BaeGI GKGCMC 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BalI TGGCCA 2 cut(s) 350, 2062
BanI GGYRCC 1 cut(s) 448
BanII GRGCYC 3 cut(s) 908, 1017, 1725
Bbv12I GWGCWC 4 cut(s) 635, 908, 1017, 2110
BbvCI CCTCAGC 3 cut(s) 928, 1004, 1140
BbvI GCAGC 9 cut(s) 200, 520, 568, 1202, 1214, 1223, 1484, 1660, 1874
BccI CCATC 4 cut(s) 391, 794, 1089, 1828
BciT130I CCWGG 3 cut(s) 53, 118, 1577
BciVI GTATCC 1 cut(s) 304
BclI TGATCA 3 cut(s) 103, 333, 2268
BcnI CCSGG 1 cut(s) 2211
BfaI CTAG 8 cut(s) 618, 651, 1010, 1136, 1727, 1763, 2093, 2308
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 825
BfuI GTATCC 1 cut(s) 304
BglI GCCNNNNNGGC 1 cut(s) 1199
BisI GCNGC 9 cut(s) 189, 534, 557, 1191, 1203, 1212, 1473, 1674, 1863
BlpI GCTNAGC 1 cut(s) 907
BlsI GCNGC 9 cut(s) 190, 535, 558, 1192, 1204, 1213, 1474, 1675, 1864
Bme1390I CCNGG 4 cut(s) 53, 118, 1577, 2211
Bme18I GGWCC 2 cut(s) 1409, 1432
BmgBI CACGTC 2 cut(s) 217, 867
BmgT120I GGNCC 5 cut(s) 49, 121, 1311, 1409, 1432
BmiI GGNNCC 3 cut(s) 122, 450, 1555
BmrFI CCNGG 4 cut(s) 53, 118, 1577, 2211
BmrI ACTGGG 2 cut(s) 1634, 1698
BmsI GCATC 3 cut(s) 1307, 1459, 2025
BmtI GCTAGC 1 cut(s) 2096
BmuI ACTGGG 2 cut(s) 1634, 1698
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
BpmI CTGGAG 1 cut(s) 1050
Bpu10I CCTNAGC 3 cut(s) 928, 1004, 1140
Bpu1102I GCTNAGC 1 cut(s) 907
BpuEI CTTGAG 2 cut(s) 1001, 1461
BpuMI CCSGG 1 cut(s) 2211
BsaBI GATNNNNATC 1 cut(s) 2280
BsaJI CCNNGG 3 cut(s) 51, 117, 1649
BsaWI WCCGGW 2 cut(s) 451, 2131
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 5 cut(s) 1501, 1568, 2138, 2216, 2294
Bse118I RCCGGY 1 cut(s) 609
Bse1I ACTGG 9 cut(s) 513, 1412, 1434, 1442, 1640, 1693, 1909, 2063, 2063
Bse3DI GCAATG 3 cut(s) 134, 298, 711
Bse8I GATNNNNATC 1 cut(s) 2280
BseBI CCWGG 3 cut(s) 53, 118, 1577
BseDI CCNNGG 3 cut(s) 51, 117, 1649
BseGI GGATG 2 cut(s) 979, 1528
BseJI GATNNNNATC 1 cut(s) 2280
BseLI CCNNNNNNNGG 5 cut(s) 1501, 1568, 2138, 2216, 2294
BseMI GCAATG 3 cut(s) 134, 298, 711
BseMII CTCAG 9 cut(s) 855, 894, 921, 942, 981, 995, 1131, 1856, 2148
BseNI ACTGG 9 cut(s) 513, 1412, 1434, 1442, 1640, 1693, 1909, 2063, 2063
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 9 cut(s) 200, 520, 568, 1202, 1214, 1223, 1484, 1660, 1874
BseYI CCCAGC 2 cut(s) 191, 1912
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 6 cut(s) 50, 123, 350, 396, 1313, 2062
BshNI GGYRCC 1 cut(s) 448
BsiHKAI GWGCWC 4 cut(s) 635, 908, 1017, 2110
BsiSI CCGG 6 cut(s) 393, 452, 610, 1866, 2132, 2210
BslFI GGGAC 4 cut(s) 211, 305, 1799, 2035
BslI CCNNNNNNNGG 5 cut(s) 1501, 1568, 2138, 2216, 2294
BsmFI GGGAC 4 cut(s) 211, 305, 1799, 2035
BsmI GAATGC 3 cut(s) 1258, 2177, 2290
BsnI GGCC 6 cut(s) 50, 123, 350, 396, 1313, 2062
Bsp1286I GDGCHC 6 cut(s) 451, 635, 908, 1017, 1725, 2110
Bsp1407I TGTACA 2 cut(s) 1035, 1162
Bsp143I GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
Bsp1720I GCTNAGC 1 cut(s) 907
BspACI CCGC 3 cut(s) 259, 1749, 2288
BspANI GGCC 6 cut(s) 50, 123, 350, 396, 1313, 2062
BspCNI CTCAG 9 cut(s) 854, 893, 920, 941, 982, 996, 1132, 1855, 2149
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 122, 450, 1555
BspMAI CTGCAG 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 2096
BspPI GGATC 4 cut(s) 384, 1880, 2142, 2270
BspT107I GGYRCC 1 cut(s) 448
BsrDI GCAATG 3 cut(s) 134, 298, 711
BsrFI RCCGGY 1 cut(s) 609
BsrGI TGTACA 2 cut(s) 1035, 1162
BsrI ACTGG 9 cut(s) 513, 1412, 1434, 1442, 1640, 1693, 1909, 2063, 2063
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 3 cut(s) 51, 117, 1649
BssMI GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
BssT1I CCWWGG 1 cut(s) 1649
Bst2UI CCWGG 3 cut(s) 53, 118, 1577
Bst4CI ACNGT 8 cut(s) 46, 202, 304, 1045, 1485, 1491, 1736, 2103
Bst6I CTCTTC 2 cut(s) 234, 1119
BstAUI TGTACA 2 cut(s) 1035, 1162
BstC8I GCNNGC 5 cut(s) 615, 656, 764, 1523, 2094
BstF5I GGATG 2 cut(s) 979, 1528
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 825
BstHHI GCGC 2 cut(s) 263, 824
BstKTI GATC 9 cut(s) 106, 210, 336, 392, 1615, 1888, 2137, 2271, 2278
BstMBI GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
BstMWI GCNNNNNNNGC 8 cut(s) 267, 1136, 1199, 1208, 1211, 1304, 1454, 2093
BstNI CCWGG 3 cut(s) 53, 118, 1577
BstNSI RCATGY 3 cut(s) 784, 1036, 1525
BstSCI CCNGG 4 cut(s) 51, 116, 1575, 2209
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 9 cut(s) 200, 520, 568, 1202, 1214, 1223, 1484, 1660, 1874
BstX2I RGATCY 2 cut(s) 389, 2134
BstYI RGATCY 2 cut(s) 389, 2134
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 6 cut(s) 50, 123, 350, 396, 1313, 2062
BtrI CACGTC 2 cut(s) 217, 867
BtsCI GGATG 2 cut(s) 979, 1528
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 6 cut(s) 51, 469, 1449, 1686, 2108, 2278
Cac8I GCNNGC 5 cut(s) 615, 656, 764, 1523, 2094
CaiI CAGNNNCTG 2 cut(s) 737, 1829
CfoI GCGC 2 cut(s) 263, 824
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 5 cut(s) 49, 121, 1311, 1409, 1432
CseI GACGC 1 cut(s) 1451
Csp6I GTAC 6 cut(s) 371, 516, 1036, 1163, 1588, 1730
CviQI GTAC 6 cut(s) 371, 516, 1036, 1163, 1588, 1730
DpnI GATC 9 cut(s) 105, 209, 335, 391, 1614, 1887, 2136, 2270, 2277
DpnII GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
EaeI YGGCCR 2 cut(s) 348, 2060
Eam1104I CTCTTC 2 cut(s) 234, 1119
EarI CTCTTC 2 cut(s) 234, 1119
Ecl136II GAGCTC 2 cut(s) 906, 1015
Eco130I CCWWGG 1 cut(s) 1649
Eco24I GRGCYC 3 cut(s) 908, 1017, 1725
Eco32I GATATC 2 cut(s) 1321, 1380
Eco47I GGWCC 2 cut(s) 1409, 1432
Eco47III AGCGCT 1 cut(s) 823
Eco53kI GAGCTC 2 cut(s) 906, 1015
EcoICRI GAGCTC 2 cut(s) 906, 1015
EcoO109I RGGNCCY 1 cut(s) 1311
EcoRI GAATTC 1 cut(s) 2197
EcoRII CCWGG 3 cut(s) 51, 116, 1575
EcoRV GATATC 2 cut(s) 1321, 1380
EcoT14I CCWWGG 1 cut(s) 1649
EcoT38I GRGCYC 3 cut(s) 908, 1017, 1725
ErhI CCWWGG 1 cut(s) 1649
FaqI GGGAC 4 cut(s) 211, 305, 1799, 2035
FauI CCCGC 1 cut(s) 1756
FbaI TGATCA 3 cut(s) 103, 333, 2268
FblI GTMKAC 2 cut(s) 869, 1932
Fnu4HI GCNGC 9 cut(s) 189, 534, 557, 1191, 1203, 1212, 1473, 1674, 1863
FokI GGATG 2 cut(s) 986, 1515
FriOI GRGCYC 3 cut(s) 908, 1017, 1725
Fsp4HI GCNGC 9 cut(s) 189, 534, 557, 1191, 1203, 1212, 1473, 1674, 1863
FspBI CTAG 8 cut(s) 618, 651, 1010, 1136, 1727, 1763, 2093, 2308
GlaI GCGC 2 cut(s) 262, 823
GluI GCNGC 9 cut(s) 189, 534, 557, 1191, 1203, 1212, 1473, 1674, 1863
GsaI CCCAGC 2 cut(s) 195, 1916
GsuI CTGGAG 1 cut(s) 1050
HaeII RGCGCY 1 cut(s) 825
HaeIII GGCC 6 cut(s) 50, 123, 350, 396, 1313, 2062
HapII CCGG 6 cut(s) 393, 452, 610, 1866, 2132, 2210
HgaI GACGC 1 cut(s) 1451
HhaI GCGC 2 cut(s) 263, 824
Hin6I GCGC 2 cut(s) 261, 822
HinP1I GCGC 2 cut(s) 261, 822
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HpaII CCGG 6 cut(s) 393, 452, 610, 1866, 2132, 2210
HphI GGTGA 4 cut(s) 372, 672, 720, 1968
Hpy166II GTNNAC 6 cut(s) 380, 518, 870, 1417, 1732, 1933
Hpy8I GTNNAC 6 cut(s) 380, 518, 870, 1417, 1732, 1933
Hpy99I CGWCG 2 cut(s) 755, 871
HpyAV CCTTC 6 cut(s) 798, 1288, 1391, 1556, 2012, 2137
HpyCH4III ACNGT 8 cut(s) 46, 202, 304, 1045, 1485, 1491, 1736, 2103
HpyCH4IV ACGT 6 cut(s) 216, 342, 637, 750, 866, 1087
HpyF10VI GCNNNNNNNGC 8 cut(s) 267, 1136, 1199, 1208, 1211, 1304, 1454, 2093
HpySE526I ACGT 6 cut(s) 216, 342, 637, 750, 866, 1087
HspAI GCGC 2 cut(s) 261, 822
Ksp22I TGATCA 3 cut(s) 103, 333, 2268
Kzo9I GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
LmnI GCTCC 6 cut(s) 144, 172, 541, 866, 1553, 1602
Lsp1109I GCAGC 9 cut(s) 200, 520, 568, 1202, 1214, 1223, 1484, 1660, 1874
LweI GCATC 3 cut(s) 1307, 1459, 2025
MaeI CTAG 8 cut(s) 618, 651, 1010, 1136, 1727, 1763, 2093, 2308
MaeII ACGT 6 cut(s) 216, 342, 637, 750, 866, 1087
MalI GATC 9 cut(s) 105, 209, 335, 391, 1614, 1887, 2136, 2270, 2277
MboI GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
MfeI CAATTG 3 cut(s) 357, 936, 1341
MflI RGATCY 2 cut(s) 389, 2134
MhlI GDGCHC 6 cut(s) 451, 635, 908, 1017, 1725, 2110
MlsI TGGCCA 2 cut(s) 350, 2062
MluNI TGGCCA 2 cut(s) 350, 2062
MlyI GAGTC 1 cut(s) 221
Mox20I TGGCCA 2 cut(s) 350, 2062
MscI TGGCCA 2 cut(s) 350, 2062
MseI TTAA 3 cut(s) 1272, 1506, 2163
MslI CAYNNNNRTG 3 cut(s) 1442, 1773, 2033
Msp20I TGGCCA 2 cut(s) 350, 2062
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 6 cut(s) 393, 452, 610, 1866, 2132, 2210
MspR9I CCNGG 4 cut(s) 53, 118, 1577, 2211
MunI CAATTG 3 cut(s) 357, 936, 1341
Mva1269I GAATGC 3 cut(s) 1258, 2177, 2290
MvaI CCWGG 3 cut(s) 53, 118, 1577
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 8 cut(s) 267, 1136, 1199, 1208, 1211, 1304, 1454, 2093
NciI CCSGG 1 cut(s) 2211
NdeII GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
NheI GCTAGC 1 cut(s) 2092
NlaIV GGNNCC 3 cut(s) 122, 450, 1555
NmuCI GTSAC 8 cut(s) 212, 217, 298, 678, 956, 1485, 1736, 1974
NspI RCATGY 3 cut(s) 784, 1036, 1525
OliI CACNNNNGTG 1 cut(s) 1442
PaeI GCATGC 1 cut(s) 1525
PciI ACATGT 2 cut(s) 780, 1032
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 3 cut(s) 1258, 2177, 2290
PfeI GAWTC 9 cut(s) 408, 581, 623, 809, 1180, 1235, 1355, 1668, 1832
PflMI CCANNNNNTGG 1 cut(s) 1568
PkrI GCNGC 9 cut(s) 190, 535, 558, 1192, 1204, 1213, 1474, 1675, 1864
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PscI ACATGT 2 cut(s) 780, 1032
Psp124BI GAGCTC 2 cut(s) 908, 1017
Psp6I CCWGG 3 cut(s) 51, 116, 1575
PspFI CCCAGC 2 cut(s) 191, 1912
PspGI CCWGG 3 cut(s) 51, 116, 1575
PspN4I GGNNCC 3 cut(s) 122, 450, 1555
PspPI GGNCC 5 cut(s) 49, 121, 1311, 1409, 1432
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 2 cut(s) 737, 1829
PsuI RGATCY 2 cut(s) 389, 2134
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 6 cut(s) 372, 517, 1037, 1164, 1589, 1731
RsaNI GTAC 6 cut(s) 371, 516, 1036, 1163, 1588, 1730
RseI CAYNNNNRTG 3 cut(s) 1442, 1773, 2033
SacI GAGCTC 2 cut(s) 908, 1017
SalI GTCGAC 1 cut(s) 868
SaqAI TTAA 3 cut(s) 1272, 1506, 2163
SatI GCNGC 9 cut(s) 189, 534, 557, 1191, 1203, 1212, 1473, 1674, 1863
Sau3AI GATC 9 cut(s) 103, 207, 333, 389, 1612, 1885, 2134, 2268, 2275
Sau96I GGNCC 5 cut(s) 49, 121, 1311, 1409, 1432
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 4 cut(s) 53, 118, 1577, 2211
SduI GDGCHC 6 cut(s) 451, 635, 908, 1017, 1725, 2110
SfaNI GCATC 3 cut(s) 1307, 1459, 2025
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 2 cut(s) 1409, 1432
SmiMI CAYNNNNRTG 3 cut(s) 1442, 1773, 2033
SmlI CTYRAG 2 cut(s) 1016, 1476
SmoI CTYRAG 2 cut(s) 1016, 1476
SphI GCATGC 1 cut(s) 1525
SsiI CCGC 3 cut(s) 259, 1749, 2288
SspI AATATT 1 cut(s) 830
SspMI CTAG 8 cut(s) 618, 651, 1010, 1136, 1727, 1763, 2093, 2308
SstI GAGCTC 2 cut(s) 908, 1017
StyD4I CCNGG 4 cut(s) 51, 116, 1575, 2209
StyI CCWWGG 1 cut(s) 1649
TaaI ACNGT 8 cut(s) 46, 202, 304, 1045, 1485, 1491, 1736, 2103
TaiI ACGT 6 cut(s) 219, 345, 640, 753, 869, 1090
TaqI TCGA 3 cut(s) 869, 946, 1376
TatI WGTACW 5 cut(s) 515, 1035, 1162, 1587, 1729
TfiI GAWTC 9 cut(s) 408, 581, 623, 809, 1180, 1235, 1355, 1668, 1832
Tru1I TTAA 3 cut(s) 1272, 1506, 2163
Tru9I TTAA 3 cut(s) 1272, 1506, 2163
TscAI CASTG 6 cut(s) 51, 469, 1449, 1693, 2108, 2278
TseFI GTSAC 8 cut(s) 212, 217, 298, 678, 956, 1485, 1736, 1974
TseI GCWGC 9 cut(s) 188, 533, 556, 1190, 1202, 1211, 1472, 1673, 1862
Tsp45I GTSAC 8 cut(s) 212, 217, 298, 678, 956, 1485, 1736, 1974
TspDTI ATGAA 7 cut(s) 309, 722, 933, 990, 1694, 2129, 2210
TspRI CASTG 6 cut(s) 51, 469, 1449, 1693, 2108, 2278
Van91I CCANNNNNTGG 1 cut(s) 1568
VpaK11BI GGWCC 2 cut(s) 1409, 1432
XapI RAATTY 3 cut(s) 920, 1680, 2197
XceI RCATGY 3 cut(s) 784, 1036, 1525
XcmI CCANNNNNNNNNTGG 2 cut(s) 1647, 1978
XmiI GTMKAC 2 cut(s) 869, 1932
XspI CTAG 8 cut(s) 618, 651, 1010, 1136, 1727, 1763, 2093, 2308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.