Prupe.8G078100_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000204
Physical Location & Seq
Forward (+)
11236303 .. 11237013
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G078100.1

Sequence Viewer

Length: 564 bp
ATGGGGTTTTTGGAGACACATCTATATGGTGATCCTAGTGTCGTACCAGGTCCTGTCTGGACTGGCCCTCCCCCCGCTTTGGTCAAGCTCAATTGTGATGGTGCATGGGTGGCTCAAACAGGCCGCGCGAGGGGTGGGTTGTGGGGGTGTTGGTTACGGGATGGCATAGGTTGTTTCATTAGTGCGGGAGGCACTAAGGATATGCATTGTGTTTCTGCGTTGATGGTGGCCGCAAAGGCAGTACGGGAAGCTTTAACTCGATGCTTGGAGTGTGGGTATGATAAGGCGGCGGTGGAATCAGATTCACTTAGTTTGATTAACATGCTAAACCATGAGGTCGCCATGGACTTGGAGATTGAAGGGATTTTATTCGATATCCAGTGTTTGACTAAACATTATCACAAGGTAGAGTTTATGTATGCTCTGAGAAAATTTAACCAAGCTGCTCATTTGATGGCAGCCCATGTTTCTAGAATTGGTGGTAGTCACAGCTGGGATCTTGTTTGTCTTGAATGGCTGTTTAAGTGCCTAGCCCAAGATGTAAACTGTTCTGTTCGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RVT

Protein Analysis

188

Amino Acids

20.54

Weight (kDa)

6.22

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 126, 128
AciI CCGC 6 cut(s) 75, 124, 185, 231, 287, 290
AclWI GGATC 2 cut(s) 26, 504
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 1 cut(s) 431
AfaI GTAC 2 cut(s) 45, 243
AfiI CCNNNNNNNGG 2 cut(s) 79, 130
AgsI TTSAA 2 cut(s) 359, 512
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 4 cut(s) 88, 251, 443, 492
AluI AGCT 4 cut(s) 88, 251, 443, 492
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 2 cut(s) 26, 504
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 3 cut(s) 64, 121, 228
ApeKI GCWGC 2 cut(s) 443, 458
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 50, 65
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 430, 470
BccI CCATC 4 cut(s) 92, 155, 217, 448
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 3 cut(s) 36, 471, 530
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 5 cut(s) 124, 231, 288, 444, 459
BlsI GCNGC 5 cut(s) 125, 232, 289, 445, 460
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 50, 65
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 342
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 130
Bse1I ACTGG 2 cut(s) 67, 379
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 79, 130
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 67, 379
BseXI GCAGC 2 cut(s) 430, 470
BseYI CCCAGC 1 cut(s) 492
Bsh1236I CGCG 2 cut(s) 126, 128
BshFI GGCC 3 cut(s) 66, 123, 230
BslI CCNNNNNNNGG 2 cut(s) 79, 130
BsmAI GTCTC 1 cut(s) 8
BsnI GGCC 3 cut(s) 66, 123, 230
Bsp143I GATC 2 cut(s) 31, 496
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 6 cut(s) 75, 124, 185, 231, 287, 290
BspANI GGCC 3 cut(s) 66, 123, 230
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 2 cut(s) 126, 128
BspPI GGATC 2 cut(s) 26, 504
BsrI ACTGG 2 cut(s) 67, 379
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 2 cut(s) 31, 496
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 548
BstDEI CTNAG 3 cut(s) 195, 308, 425
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 2 cut(s) 126, 128
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 34, 499
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 2 cut(s) 31, 496
BstMWI GCNNNNNNNGC 2 cut(s) 110, 236
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 46
BstUI CGCG 2 cut(s) 126, 128
BstV1I GCAGC 2 cut(s) 430, 470
BstX2I RGATCY 1 cut(s) 496
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 1 cut(s) 496
BsuRI GGCC 3 cut(s) 66, 123, 230
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 386
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 50, 65
CsiI ACCWGGT 1 cut(s) 46
Csp6I GTAC 2 cut(s) 44, 242
CviAII CATG 5 cut(s) 105, 322, 332, 343, 464
CviQI GTAC 2 cut(s) 44, 242
DdeI CTNAG 3 cut(s) 195, 308, 425
DpnI GATC 2 cut(s) 33, 498
DpnII GATC 2 cut(s) 31, 496
EaeI YGGCCR 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 342
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 5 cut(s) 108, 325, 335, 346, 467
FatI CATG 5 cut(s) 104, 321, 331, 342, 463
FauI CCCGC 2 cut(s) 82, 178
Fnu4HI GCNGC 5 cut(s) 124, 231, 288, 444, 459
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 5 cut(s) 124, 231, 288, 444, 459
FspBI CTAG 3 cut(s) 36, 471, 530
GlaI GCGC 1 cut(s) 127
GluI GCNGC 5 cut(s) 124, 231, 288, 444, 459
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 3 cut(s) 66, 123, 230
HhaI GCGC 1 cut(s) 128
Hin1II CATG 5 cut(s) 108, 325, 335, 346, 467
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 2 cut(s) 296, 302
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 301, 426
Hpy188III TCNNGA 3 cut(s) 58, 471, 509
Hpy8I GTNNAC 1 cut(s) 544
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 2 cut(s) 104, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 236
HpyF3I CTNAG 3 cut(s) 195, 308, 425
Hsp92II CATG 5 cut(s) 108, 325, 335, 346, 467
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 31, 496
LpnPI CCDG 8 cut(s) 33, 43, 48, 60, 66, 105, 392, 478
Lsp1109I GCAGC 2 cut(s) 430, 470
LweI GCATC 1 cut(s) 251
MabI ACCWGGT 1 cut(s) 46
MaeI CTAG 3 cut(s) 36, 471, 530
MaeIII GTNAC 2 cut(s) 153, 485
MalI GATC 2 cut(s) 33, 498
MboI GATC 2 cut(s) 31, 496
MfeI CAATTG 1 cut(s) 91
MflI RGATCY 1 cut(s) 496
MluCI AATT 3 cut(s) 91, 431, 474
MnlI CCTC 4 cut(s) 78, 123, 182, 328
Mph1103I ATGCAT 1 cut(s) 207
MseI TTAA 5 cut(s) 254, 318, 435, 522, 562
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 48
MunI CAATTG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 2 cut(s) 126, 128
MwoI GCNNNNNNNGC 2 cut(s) 110, 236
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 31, 496
NlaIII CATG 5 cut(s) 108, 325, 335, 346, 467
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 207
NspI RCATGY 1 cut(s) 325
PfeI GAWTC 2 cut(s) 296, 302
PkrI GCNGC 5 cut(s) 125, 232, 289, 445, 460
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 2 cut(s) 50, 65
PspPPI RGGWCCY 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 492
RsaI GTAC 2 cut(s) 45, 243
RsaNI GTAC 2 cut(s) 44, 242
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 5 cut(s) 254, 318, 435, 522, 562
SatI GCNGC 5 cut(s) 124, 231, 288, 444, 459
Sau3AI GATC 2 cut(s) 31, 496
Sau96I GGNCC 2 cut(s) 50, 65
ScrFI CCNGG 1 cut(s) 48
SetI ASST 8 cut(s) 52, 90, 172, 253, 339, 408, 445, 494
SexAI ACCWGGT 1 cut(s) 46
SfaNI GCATC 1 cut(s) 251
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 3 cut(s) 91, 431, 474
SsiI CCGC 6 cut(s) 75, 124, 185, 231, 287, 290
SspMI CTAG 3 cut(s) 36, 471, 530
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 259, 372
TasI AATT 3 cut(s) 91, 431, 474
TauI GCSGC 3 cut(s) 126, 233, 290
TfiI GAWTC 2 cut(s) 296, 302
Tru1I TTAA 5 cut(s) 254, 318, 435, 522, 562
Tru9I TTAA 5 cut(s) 254, 318, 435, 522, 562
TscAI CASTG 1 cut(s) 386
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 443, 458
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 470
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XspI CTAG 3 cut(s) 36, 471, 530
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.