Rmu_sc0001066.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001066.1
OG0000204
Physical Location & Seq
Reverse (-)
3754 .. 4222
469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001066.1_g000001.1.cds

Sequence Viewer

Length: 255 bp
atgctatatcacaagttcttctcatttcttggtcaatttcgaataccagaaatcaggaatgcggatggtcaacctatttttgctgcttctaagaatctgggacatgcttcagttctcattgcagaagctacagctctcagggatgctttacatgctgctcaacattataacttttccacagttttagttgaaggagattctaaagtgcttatggatagcatcctcaagaaggtagctactccttggcagatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

84

Amino Acids

9.36

Weight (kDa)

8.14

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AciI CCGC 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 3 cut(s) 128, 134, 236
AluI AGCT 3 cut(s) 128, 134, 236
ApeKI GCWGC 2 cut(s) 83, 155
AsuII TTCGAA 1 cut(s) 40
BbvI GCAGC 2 cut(s) 70, 142
BccI CCATC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 84, 156
BlsI GCNGC 2 cut(s) 85, 157
BmsI GCATC 2 cut(s) 133, 228
Bpu14I TTCGAA 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 3 cut(s) 70, 148, 219
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 70, 142
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 40
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 150
BspT104I TTCGAA 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 90, 137
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 3 cut(s) 70, 148, 219
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 107, 155
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 70, 142
BtsCI GGATG 3 cut(s) 70, 148, 219
CviAII CATG 2 cut(s) 104, 152
CviJI RGCY 3 cut(s) 128, 134, 236
CviKI_1 RGCY 3 cut(s) 128, 134, 236
DdeI CTNAG 2 cut(s) 90, 137
Eco130I CCWWGG 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 107, 155
FaiI YATR 5 cut(s) 7, 105, 153, 168, 212
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 103, 151
Fnu4HI GCNGC 2 cut(s) 84, 156
FokI GGATG 3 cut(s) 77, 155, 206
Fsp4HI GCNGC 2 cut(s) 84, 156
GluI GCNGC 2 cut(s) 84, 156
Hin1II CATG 2 cut(s) 107, 155
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HinfI GANTC 2 cut(s) 94, 197
Hpy166II GTNNAC 1 cut(s) 71
Hpy188III TCNNGA 2 cut(s) 55, 226
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 185, 223
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 90, 137
Hsp92II CATG 2 cut(s) 107, 155
LpnPI CCDG 4 cut(s) 40, 60, 83, 124
Lsp1109I GCAGC 2 cut(s) 70, 142
LweI GCATC 2 cut(s) 133, 228
MboII GAAGA 1 cut(s) 10
MluCI AATT 1 cut(s) 35
MnlI CCTC 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 107, 155
NspI RCATGY 2 cut(s) 107, 155
NspV TTCGAA 1 cut(s) 40
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 94, 197
PkrI GCNGC 2 cut(s) 85, 157
PsiI TTATAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 84, 156
SetI ASST 5 cut(s) 76, 130, 136, 234, 238
SfaNI GCATC 2 cut(s) 133, 228
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 40
SgeI CNNG 9 cut(s) 25, 41, 59, 67, 110, 116, 151, 164, 238
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 62
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 35
TfiI GAWTC 2 cut(s) 94, 197
TseI GCWGC 2 cut(s) 83, 155
XagI CCTNNNNNAGG 1 cut(s) 227
XceI RCATGY 2 cut(s) 107, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.