RLG00000011653

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000204
Physical Location & Seq
Forward (+)
11434184 .. 11436076
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011653

Sequence Viewer

Length: 705 bp
ATGGCTGAGATTTTGAGGATGGGGAGGCTGCAGCATAAGAATTTGGTCCAAATGCGAGGAAGCTTCTGGTTTGGGAGTCCACTTCAGTTGGATGCTGCAAAGGTGGCTGGGGATGACTTTGTCCCTTGTTGGCAGTGCTTGTGTAAGATGTTGAAGAGAAGAAATGATGGAGATGAGGCTTTAGCTTGGGCAGCATTGGAGTGTGGAGGTTGTGGAAATGTCGGAACCATGCACAGTTTGGGGGAGAAATTATTGAACCCCAACAAGCATTGGAGGTGGAGCGGTGCAGGTTGGGTGGTTCGAGATCATGAAGGTCATTTCCTCCGTGGTGGCTGCAGTGGCCGTTTCATAAGGGAATCTGCACTTATGGTGGAGGCAGTGGCAGTGCGTGATGGTTTGGAGCGGTGCCTTGCGGGTTGTTGGAAGAAAGTGGTGATTGAAACTGATGCAAAGTTGGTGGTTGATTACTTGAACAACATAATAGAACCTGATGCCTCTATAGAGGCTATTCTATTTGACATAATGGCTTTGGCATCCAAGTTTGAAGTGGTACGGTTCTCTTATATTCCTCGTAGGAATAATGAAGTTGCCCGTCTACTAGCTACTCATGCAGTCGGTTGTAATAGGGCATGTCGCTGGGTTGATAATCCCCCTGATGGGGTTGCTATTGCCTTAGCTATGGATGTAACAAATTCTAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

235

Amino Acids

26.0

Weight (kDa)

7.55

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 94 - 204 7.9e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 405
AccBSI CCGCTC 2 cut(s) 282, 403
AccI GTMKAC 1 cut(s) 595
AciI CCGC 3 cut(s) 282, 403, 413
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 2 cut(s) 40, 691
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 3 cut(s) 656, 657, 658
AgsI TTSAA 5 cut(s) 154, 256, 440, 472, 545
AluBI AGCT 5 cut(s) 63, 185, 602, 677, 699
AluI AGCT 5 cut(s) 63, 185, 602, 677, 699
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 5 cut(s) 28, 31, 95, 191, 333
ApoI RAATTY 2 cut(s) 40, 691
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 405
BbvI GCAGC 5 cut(s) 15, 43, 82, 203, 320
BccI CCATC 4 cut(s) 13, 161, 386, 650
BceAI ACGGC 1 cut(s) 327
BfaI CTAG 2 cut(s) 599, 696
BfmI CTRYAG 3 cut(s) 29, 334, 498
BfuAI ACCTGC 1 cut(s) 278
BisI GCNGC 5 cut(s) 29, 32, 96, 192, 334
BlsI GCNGC 5 cut(s) 30, 33, 97, 193, 335
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 226, 407
BmsI GCATC 4 cut(s) 82, 436, 481, 542
Bpu10I CCTNAGC 1 cut(s) 673
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 3 cut(s) 656, 657, 658
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 5 cut(s) 24, 97, 118, 533, 688
BseLI CCNNNNNNNGG 3 cut(s) 656, 657, 658
BseXI GCAGC 5 cut(s) 15, 43, 82, 203, 320
BseYI CCCAGC 2 cut(s) 107, 636
BsgI GTGCAG 2 cut(s) 306, 345
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 405
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 3 cut(s) 656, 657, 658
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 3 cut(s) 282, 403, 413
BspANI GGCC 1 cut(s) 342
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 226, 407
BspMAI CTGCAG 2 cut(s) 33, 338
BspMI ACCTGC 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 405
BsrBI CCGCTC 2 cut(s) 282, 403
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 236, 555
Bst6I CTCTTC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 6, 673
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 5 cut(s) 24, 97, 118, 533, 688
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 104, 191, 339, 608
BstNSI RCATGY 1 cut(s) 633
BstSFI CTRYAG 3 cut(s) 29, 334, 498
BstV1I GCAGC 5 cut(s) 15, 43, 82, 203, 320
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 5 cut(s) 24, 97, 118, 533, 688
BtsI GCAGTG 4 cut(s) 140, 343, 384, 390
BtsIMutI CAGTG 4 cut(s) 140, 343, 384, 390
BveI ACCTGC 1 cut(s) 278
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 551
CspCI CAANNNNNGTGG 4 cut(s) 69, 104, 438, 473
CviAII CATG 4 cut(s) 229, 308, 608, 630
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 2 cut(s) 6, 673
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 68
FaeI CATG 4 cut(s) 232, 311, 611, 633
FaqI GGGAC 1 cut(s) 107
FatI CATG 4 cut(s) 228, 307, 607, 629
FauI CCCGC 1 cut(s) 406
FblI GTMKAC 1 cut(s) 595
Fnu4HI GCNGC 5 cut(s) 29, 32, 96, 192, 334
FokI GGATG 5 cut(s) 31, 104, 125, 520, 695
Fsp4HI GCNGC 5 cut(s) 29, 32, 96, 192, 334
FspBI CTAG 2 cut(s) 599, 696
GluI GCNGC 5 cut(s) 29, 32, 96, 192, 334
GsaI CCCAGC 2 cut(s) 111, 640
HaeIII GGCC 1 cut(s) 342
Hin1II CATG 4 cut(s) 232, 311, 611, 633
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 76, 356
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 80, 596
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 302, 308
Hpy8I GTNNAC 2 cut(s) 80, 596
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 2 cut(s) 236, 555
HpyCH4V TGCA 8 cut(s) 31, 98, 232, 287, 336, 362, 449, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 191, 339, 608
HpyF3I CTNAG 2 cut(s) 6, 673
Hsp92II CATG 4 cut(s) 232, 311, 611, 633
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 279, 400
LpnPI CCDG 6 cut(s) 52, 93, 273, 501, 622, 666
Lsp1109I GCAGC 5 cut(s) 15, 43, 82, 203, 320
LweI GCATC 4 cut(s) 82, 436, 481, 542
MaeI CTAG 2 cut(s) 599, 696
MaeIII GTNAC 1 cut(s) 685
MalI GATC 1 cut(s) 306
MbiI CCGCTC 2 cut(s) 282, 403
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 166, 171, 436
MluCI AATT 3 cut(s) 40, 248, 691
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 3 cut(s) 69, 202, 401
MseI TTAA 1 cut(s) 703
MslI CAYNNNNRTG 1 cut(s) 199
MwoI GCNNNNNNNGC 4 cut(s) 104, 191, 339, 608
NdeII GATC 1 cut(s) 304
NlaIII CATG 4 cut(s) 232, 311, 611, 633
NlaIV GGNNCC 2 cut(s) 226, 407
NspI RCATGY 1 cut(s) 633
PagI TCATGA 1 cut(s) 307
PfeI GAWTC 1 cut(s) 356
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 5 cut(s) 30, 33, 97, 193, 335
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspFI CCCAGC 2 cut(s) 107, 636
PspN4I GGNNCC 2 cut(s) 226, 407
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 2 cut(s) 33, 338
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 703
SatI GCNGC 5 cut(s) 29, 32, 96, 192, 334
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 85
SfaNI GCATC 4 cut(s) 82, 436, 481, 542
SfcI CTRYAG 3 cut(s) 29, 334, 498
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 199
Sse9I AATT 3 cut(s) 40, 248, 691
SsiI CCGC 3 cut(s) 282, 403, 413
SspMI CTAG 2 cut(s) 599, 696
TaaI ACNGT 2 cut(s) 236, 555
TaqI TCGA 1 cut(s) 301
TasI AATT 3 cut(s) 40, 248, 691
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 703
Tru9I TTAA 1 cut(s) 703
TscAI CASTG 4 cut(s) 140, 343, 384, 390
TseI GCWGC 5 cut(s) 28, 31, 95, 191, 333
TspDTI ATGAA 3 cut(s) 324, 337, 597
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 4 cut(s) 140, 343, 384, 390
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 2 cut(s) 40, 691
XceI RCATGY 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 544
XmiI GTMKAC 1 cut(s) 595
XspI CTAG 2 cut(s) 599, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.