Prupe.6G185900_v2.0.a1

Glycosyltransferase like family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000204
Physical Location & Seq
Forward (+)
19468130 .. 19468567
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G185900.1

Sequence Viewer

Length: 438 bp
CATTTGGTCAAAAAGAAAAATGATATCCTTATAGTGATTAAATGGCACCTCCCTCCTACAGCTTGGATTAAAATTAATTTTGATGGGTATGTCATTAATTCTCAAGCTTCCATTGGTTTTTTCATTCAGAATAATGATGGTCATGTGTTATTGGCTGGTGCCAATAACATTGGTAAAAATTCCATAAATGTGGTTGAAAGTGTTGCTCTTCAAGATGGTCTCGATGATGCTATTGATAGAGGTTGGGGTCAAATTGTGGTTGAAGGTGACTCTAAACTTGTTATTGACAGTGTCCTCAAAAAAGTTATTTTCCCTTGGAGTATCCAACAAATCATTCAAGATATCTGGCACCTTAACTCTTCTATAGCTTCTGTTCGATTCCAACATGTGTTTAGGGAGGTAAACTTCACTGCGAGCTGGGCCATGGGCTCTCATCGC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.4

Weight (kDa)

7.2

Isoelectric Point (pI)

24.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 45, 158, 348
AcsI RAATTY 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 4 cut(s) 197, 212, 263, 338
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 4 cut(s) 62, 107, 368, 417
AluI AGCT 4 cut(s) 62, 107, 368, 417
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 420
ApoI RAATTY 1 cut(s) 178
AseI ATTAAT 2 cut(s) 75, 96
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 278
BanI GGYRCC 3 cut(s) 45, 158, 348
BanII GRGCYC 1 cut(s) 431
BccI CCATC 3 cut(s) 77, 131, 209
BciVI GTATCC 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 224
BfmI CTRYAG 2 cut(s) 57, 363
BfuI GTATCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 3 cut(s) 47, 160, 350
BmsI GCATC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 314, 423
BseDI CCNNGG 2 cut(s) 314, 423
BseYI CCCAGC 1 cut(s) 417
BshFI GGCC 1 cut(s) 422
BshNI GGYRCC 3 cut(s) 45, 158, 348
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 422
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 431
Bsp19I CCATGG 1 cut(s) 423
BspANI GGCC 1 cut(s) 422
BspLI GGNNCC 3 cut(s) 47, 160, 350
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 3 cut(s) 45, 158, 348
BspTNI GGTCTC 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 314, 423
BssT1I CCWWGG 2 cut(s) 314, 423
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 213, 364
BstC8I GCNNGC 1 cut(s) 415
BstDSI CCRYGG 1 cut(s) 423
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 419, 435
BstNSI RCATGY 1 cut(s) 389
BstSFI CTRYAG 2 cut(s) 57, 363
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 422
BtgI CCRYGG 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 295, 408
Cac8I GCNNGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 420
CviAII CATG 3 cut(s) 143, 386, 424
CviJI RGCY 7 cut(s) 62, 107, 155, 368, 417, 422, 429
CviKI_1 RGCY 7 cut(s) 62, 107, 155, 368, 417, 422, 429
Eam1104I CTCTTC 2 cut(s) 213, 364
EarI CTCTTC 2 cut(s) 213, 364
Eco130I CCWWGG 2 cut(s) 314, 423
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 2 cut(s) 25, 343
EcoRV GATATC 2 cut(s) 25, 343
EcoT14I CCWWGG 2 cut(s) 314, 423
EcoT38I GRGCYC 1 cut(s) 431
ErhI CCWWGG 2 cut(s) 314, 423
FaeI CATG 3 cut(s) 146, 389, 427
FaiI YATR 7 cut(s) 32, 90, 144, 185, 365, 387, 425
FatI CATG 3 cut(s) 142, 385, 423
FriOI GRGCYC 1 cut(s) 431
GsaI CCCAGC 1 cut(s) 421
HaeIII GGCC 1 cut(s) 422
Hin1II CATG 3 cut(s) 146, 389, 427
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 2 cut(s) 269, 378
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 212, 221, 338
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 435
Hsp92II CATG 3 cut(s) 146, 389, 427
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 3 cut(s) 141, 331, 403
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 2 cut(s) 200, 351
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 5 cut(s) 72, 76, 97, 178, 252
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 349, 406
MnlI CCTC 5 cut(s) 59, 63, 233, 305, 391
MseI TTAA 5 cut(s) 39, 69, 75, 96, 354
MslI CAYNNNNRTG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 419, 435
NcoI CCATGG 1 cut(s) 423
NlaIII CATG 3 cut(s) 146, 389, 427
NlaIV GGNNCC 3 cut(s) 47, 160, 350
NmuCI GTSAC 1 cut(s) 266
NspI RCATGY 1 cut(s) 389
PciI ACATGT 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 378
PflFI GACNNNGTC 1 cut(s) 290
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PscI ACATGT 1 cut(s) 385
PshBI ATTAAT 2 cut(s) 75, 96
PspFI CCCAGC 1 cut(s) 417
PspN4I GGNNCC 3 cut(s) 47, 160, 350
PspPI GGNCC 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 5 cut(s) 39, 69, 75, 96, 354
Sau96I GGNCC 1 cut(s) 420
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 1 cut(s) 431
SetI ASST 9 cut(s) 51, 64, 109, 244, 268, 354, 370, 402, 419
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 2 cut(s) 57, 363
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 5 cut(s) 72, 76, 97, 178, 252
StyI CCWWGG 2 cut(s) 314, 423
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 2 cut(s) 222, 376
TasI AATT 5 cut(s) 72, 76, 97, 178, 252
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 5 cut(s) 39, 69, 75, 96, 354
Tru9I TTAA 5 cut(s) 39, 69, 75, 96, 354
TscAI CASTG 2 cut(s) 295, 415
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 112
TspRI CASTG 2 cut(s) 295, 415
Tth111I GACNNNGTC 1 cut(s) 290
VspI ATTAAT 2 cut(s) 75, 96
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.