FvH4_5g31961

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000204
Physical Location & Seq
Reverse (-)
23066946 .. 23067501
556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31961.t1

Sequence Viewer

Length: 300 bp
ATGGAGATACATCAGTCTAAACACTCCGATCGTTCTTACACATGGGTCATCTGGGCATGGTGGACTAGGCTCATGAAGACAGTTATCACAGGAGTTTACAAAGTATTAATTGATGTTCTCACCGGAAAAGCACACTGCCCCTGGAGAATCAAAGTTCTAATCCATGACATTCAGCATCTTGCGGCCAAGTTTCAGTCACTGTCCAACTTTGCTGTCAATGATCATCTGGGAGCTGAGTTATGGCAGAGCTTTGACCATCCTGGTGACAGTCCTATCAAACATGGTGTTGCGCTACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

100

Amino Acids

11.48

Weight (kDa)

9.25

Isoelectric Point (pI)

27.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 183
AjnI CCWGG 2 cut(s) 140, 259
AluBI AGCT 2 cut(s) 233, 249
AluI AGCT 2 cut(s) 233, 249
AlwNI CAGNNNCTG 1 cut(s) 199
AoxI GGCC 1 cut(s) 183
AseI ATTAAT 1 cut(s) 107
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 112, 275
BaeI ACNNNNGTAYC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 83
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 142, 261
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 142, 261
BmrFI CCNGG 2 cut(s) 142, 261
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 122
BseBI CCWGG 2 cut(s) 142, 261
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 28, 220
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 28, 220
Bst2UI CCWGG 2 cut(s) 142, 261
Bst4CI ACNGT 3 cut(s) 82, 201, 269
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 2 cut(s) 31, 223
BstMBI GATC 2 cut(s) 28, 220
BstMCI CGRYCG 1 cut(s) 31
BstNI CCWGG 2 cut(s) 142, 261
BstSCI CCNGG 2 cut(s) 140, 259
BstV2I GAAGAC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 197
CaiI CAGNNNCTG 1 cut(s) 199
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 292
CviAII CATG 5 cut(s) 42, 57, 73, 164, 281
CviJI RGCY 4 cut(s) 70, 185, 233, 249
CviKI_1 RGCY 4 cut(s) 70, 185, 233, 249
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 30, 222
DpnII GATC 2 cut(s) 28, 220
EaeI YGGCCR 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 140, 259
FaeI CATG 5 cut(s) 45, 60, 76, 167, 284
FaiI YATR 6 cut(s) 43, 58, 74, 165, 241, 282
FatI CATG 5 cut(s) 41, 56, 72, 163, 280
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 123
HhaI GCGC 1 cut(s) 292
Hin1II CATG 5 cut(s) 45, 60, 76, 167, 284
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 1 cut(s) 147
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 112, 275
Hpy166II GTNNAC 2 cut(s) 63, 97
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 2 cut(s) 63, 97
HpyCH4III ACNGT 3 cut(s) 82, 201, 269
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 5 cut(s) 45, 60, 76, 167, 284
HspAI GCGC 1 cut(s) 290
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 2 cut(s) 28, 220
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 8 cut(s) 37, 75, 127, 136, 154, 212, 246, 273
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 195, 263
MalI GATC 2 cut(s) 30, 222
MboI GATC 2 cut(s) 28, 220
MboII GAAGA 1 cut(s) 88
MluCI AATT 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 228
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 142, 261
MvaI CCWGG 2 cut(s) 142, 261
NdeII GATC 2 cut(s) 28, 220
NlaIII CATG 5 cut(s) 45, 60, 76, 167, 284
NmuCI GTSAC 2 cut(s) 195, 263
PagI TCATGA 1 cut(s) 72
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 184
Ple19I CGATCG 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 140, 259
PspGI CCWGG 2 cut(s) 140, 259
PstNI CAGNNNCTG 1 cut(s) 199
PvuI CGATCG 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 28, 220
ScrFI CCNGG 2 cut(s) 142, 261
SetI ASST 2 cut(s) 235, 251
SfaNI GCATC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 1 cut(s) 108
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 140, 259
TaaI ACNGT 3 cut(s) 82, 201, 269
TasI AATT 1 cut(s) 108
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 2 cut(s) 140, 204
TseFI GTSAC 2 cut(s) 195, 263
Tsp45I GTSAC 2 cut(s) 195, 263
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 2 cut(s) 140, 204
VspI ATTAAT 1 cut(s) 107
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.