Rh6DG021400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000204
Physical Location & Seq
Reverse (-)
1878142 .. 1894082
15941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG021400.1

Sequence Viewer

Length: 168 bp
ATGGGCTATCATAGTAGTGCGGAGGGATTTGTTTTTCGCAATGCGGATGGGAAACCAAATCCTGCTGCTGCTAATTCGTTGGGAAGCACAGATGTTCTTACTGCTGAGGCCTTGGCTTTAAGGGCCGGTTTGAATGCTGCTTGGCTTCATGGTCTTTCCAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

55

Amino Acids

5.63

Weight (kDa)

5.98

Isoelectric Point (pI)

18.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 55 4.4e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 20, 44
AgsI TTSAA 1 cut(s) 133
AoxI GGCC 2 cut(s) 108, 123
ApeKI GCWGC 3 cut(s) 65, 68, 137
AspS9I GGNCC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 52, 55, 124
BccI CCATC 1 cut(s) 41
BisI GCNGC 3 cut(s) 66, 69, 138
BlsI GCNGC 3 cut(s) 67, 70, 139
BmgT120I GGNCC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 52, 55, 124
BshFI GGCC 2 cut(s) 110, 125
BsiSI CCGG 1 cut(s) 126
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 110, 125
BspACI CCGC 2 cut(s) 20, 44
BspANI GGCC 2 cut(s) 110, 125
BspCNI CTCAG 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 52, 55, 124
BsuRI GGCC 2 cut(s) 110, 125
BtsCI GGATG 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 123
CviAII CATG 1 cut(s) 149
CviJI RGCY 5 cut(s) 6, 110, 116, 125, 145
CviKI_1 RGCY 5 cut(s) 6, 110, 116, 125, 145
DdeI CTNAG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 152
FaiI YATR 2 cut(s) 12, 150
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 66, 69, 138
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 66, 69, 138
GluI GCNGC 3 cut(s) 66, 69, 138
HaeIII GGCC 2 cut(s) 110, 125
HapII CCGG 1 cut(s) 126
Hin1II CATG 1 cut(s) 152
HpaII CCGG 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 152
LpnPI CCDG 2 cut(s) 75, 139
Lsp1109I GCAGC 3 cut(s) 52, 55, 124
MluCI AATT 1 cut(s) 73
MnlI CCTC 2 cut(s) 16, 100
MseI TTAA 2 cut(s) 119, 166
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 152
PceI AGGCCT 1 cut(s) 110
PctI GAATGC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 67, 70, 139
PspPI GGNCC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 119, 166
SatI GCNGC 3 cut(s) 66, 69, 138
Sau96I GGNCC 1 cut(s) 123
SgeI CNNG 5 cut(s) 74, 124, 138, 153, 161
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 1 cut(s) 73
SseBI AGGCCT 1 cut(s) 110
SsiI CCGC 2 cut(s) 20, 44
StuI AGGCCT 1 cut(s) 110
StyI CCWWGG 1 cut(s) 111
TasI AATT 1 cut(s) 73
Tru1I TTAA 2 cut(s) 119, 166
Tru9I TTAA 2 cut(s) 119, 166
TseI GCWGC 3 cut(s) 65, 68, 137
TspDTI ATGAA 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.