RchiOBHm_Chr7g0218671

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000204
Physical Location & Seq
Reverse (-)
36814867 .. 36815792
926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19575

Sequence Viewer

Length: 432 bp
ATGGTTCAGTGTTGCATAATAAATGAGCTGCTACAGGATTTGTCTGATGTAGCCAAGATGAACACAAAATTAGGACAATCTATAGTTCTTGTAGCTGAAGCTTTGGTGCTCAGAGAGGGTTTATGTCAGGCACTTAACCAAGGATACAATCAAATCAAGTACAGGGGAGATTCTAAAATTCTTATTGATAGCATTAACTGTCTGATCTCAGTGCTTTGGAGAATCAAATTCTTGGTTAAAGAGATTCTTCATTTTGCCACTGCTTGTTCTTCTATTTCCTTCAAACACTTGCATCAGGAGGCAAATTTTCTAGCGGATGCTGTCAATGCTGTTGGTCATTTTACAGGCTTCAATTCATGCATGGGATCCCTCTCTTCCTTTAAATGCCATGTCTGCCTTTTATCTAGATCAGTTAGGAGTTGGTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

8.45

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 24 - 108 1.4e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 314
AclWI GGATC 2 cut(s) 360, 373
AcsI RAATTY 3 cut(s) 177, 227, 304
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 2 cut(s) 283, 352
AluBI AGCT 3 cut(s) 28, 95, 101
AluI AGCT 3 cut(s) 28, 95, 101
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 2 cut(s) 360, 373
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 177, 227, 304
BamHI GGATCC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 15
BciVI GTATCC 1 cut(s) 137
BfaI CTAG 2 cut(s) 311, 405
BfmI CTRYAG 2 cut(s) 32, 81
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 367
BmsI GCATC 2 cut(s) 301, 307
BsaJI CCNNGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 124, 222
BseXI GCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 204, 365, 407
BspACI CCGC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 123, 221
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 360, 373
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 3 cut(s) 204, 365, 407
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 379
BstDEI CTNAG 2 cut(s) 110, 208
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 3 cut(s) 207, 368, 410
BstMBI GATC 3 cut(s) 204, 365, 407
BstMWI GCNNNNNNNGC 2 cut(s) 326, 393
BstSFI CTRYAG 2 cut(s) 32, 81
BstV1I GCAGC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuI GTATCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 3 cut(s) 14, 216, 258
Csp6I GTAC 1 cut(s) 160
CviAII CATG 3 cut(s) 357, 361, 389
CviJI RGCY 5 cut(s) 28, 53, 95, 101, 348
CviKI_1 RGCY 5 cut(s) 28, 53, 95, 101, 348
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 110, 208
DpnI GATC 3 cut(s) 206, 367, 409
DpnII GATC 3 cut(s) 204, 365, 407
DraI TTTAAA 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 360, 364, 392
FaiI YATR 6 cut(s) 17, 83, 124, 358, 362, 390
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 3 cut(s) 356, 360, 388
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 311, 405
GluI GCNGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 360, 364, 392
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 3 cut(s) 170, 222, 244
Hpy188I TCNGA 3 cut(s) 46, 113, 204
Hpy188III TCNNGA 2 cut(s) 296, 405
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 15, 292, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 393
HpyF3I CTNAG 2 cut(s) 110, 208
Hsp92II CATG 3 cut(s) 360, 364, 392
Kzo9I GATC 3 cut(s) 204, 365, 407
LpnPI CCDG 5 cut(s) 20, 113, 148, 281, 330
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 2 cut(s) 301, 307
MaeI CTAG 2 cut(s) 311, 405
MalI GATC 3 cut(s) 206, 367, 409
MboI GATC 3 cut(s) 204, 365, 407
MboII GAAGA 3 cut(s) 239, 261, 366
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 5 cut(s) 68, 177, 227, 304, 352
MnlI CCTC 3 cut(s) 109, 292, 380
Mph1103I ATGCAT 1 cut(s) 362
MseI TTAA 4 cut(s) 135, 195, 237, 381
MwoI GCNNNNNNNGC 2 cut(s) 326, 393
NdeII GATC 3 cut(s) 204, 365, 407
NlaIII CATG 3 cut(s) 360, 364, 392
NlaIV GGNNCC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 362
PfeI GAWTC 3 cut(s) 170, 222, 244
PkrI GCNGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 367
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 4 cut(s) 135, 195, 237, 381
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 204, 365, 407
SduI GDGCHC 1 cut(s) 111
SetI ASST 3 cut(s) 30, 97, 103
SfaNI GCATC 2 cut(s) 301, 307
SfcI CTRYAG 2 cut(s) 32, 81
Sse9I AATT 5 cut(s) 68, 177, 227, 304, 352
SsiI CCGC 1 cut(s) 314
SspMI CTAG 2 cut(s) 311, 405
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 200
TasI AATT 5 cut(s) 68, 177, 227, 304, 352
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 3 cut(s) 170, 222, 244
Tru1I TTAA 4 cut(s) 135, 195, 237, 381
Tru9I TTAA 4 cut(s) 135, 195, 237, 381
TscAI CASTG 3 cut(s) 14, 216, 265
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 74, 239, 345
TspRI CASTG 3 cut(s) 14, 216, 265
XapI RAATTY 3 cut(s) 177, 227, 304
XbaI TCTAGA 1 cut(s) 404
XspI CTAG 2 cut(s) 311, 405
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.