AT1G04625

Contains the following InterPro domains Polynucleotidyl transferase, ribonuclease H fold (InterPro IPR012337)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000204
Physical Location & Seq
Reverse (-)
1287831 .. 1289820
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04625.1

Sequence Viewer

Length: 774 bp
ATGATTCAACAGACAGTATTCTTCTTGTATTGGTTTTCTCTTAAGTGTTTCAATCGTAATATGAGGCAAAAACAGTTTCATGATTCATCAGCAAGCTGCAAGAAATTGGCTTATTTGACAGCTCCAGCTTCTCTCCGATATGCAAGACAAGACGCCAAAGAATGGCAAGATGCAGAAGAGTACACCCACCGTTTATCATCAAAACCTGACAGAGTAACGTCACAAGAACCAACAGCTAATCTCTGGACAACACCCCCTATTGGTTGGACGAAATGCAACTATGACGGCACTTACCACAGCAACGCTCCGAGTAAAGCGGGTTGGCTCTTACGGGATGATCGAGGAACCTTTCTAGGTGCAGCTCATGCTATAGGCTCTATTACTACCAATCCGATGGAAAGTGAACTCCAAGCTTTAGTCATGGCCATGCAACATTGTTGGAGTAGGGGCTATAGGAAAATTTACTTTGAAGGTGACAATAAAGAAGTCTCAGAGATTGTCAATGGTCGGTCTTCAAATTTTGCAGTTTTTAATTGGATAAGAGATATAAGCGCTTGGAGATCAAAATTTGAAGAATGCAAGTTTACTTGGACAAGGCGATTTTCAAACATGGCTGCAGATGCTCTGGCAAAACAACAACTTCCTTTGAACACTCAGTTTTATTGCTATAACTATATCCCGTTTAGAGATCGTGAAACGCAAGAAAACAGAGAGACAAACGGTGGCGAGATCATTGATGGTGTGATCACCGAGTTACAGTTCCGACGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

257

Amino Acids

30.07

Weight (kDa)

8.84

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 93 - 212 2.3e-32 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 3 cut(s) 459, 517, 566
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 162, 260
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 7 cut(s) 8, 52, 470, 516, 572, 606, 649
AluBI AGCT 6 cut(s) 96, 122, 128, 236, 362, 413
AluI AGCT 6 cut(s) 96, 122, 128, 236, 362, 413
Alw26I GTCTC 2 cut(s) 493, 707
Aor51HI AGCGCT 1 cut(s) 553
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 3 cut(s) 96, 359, 614
ApoI RAATTY 3 cut(s) 459, 517, 566
AspLEI GCGC 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 485, 739
BalI TGGCCA 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 83, 371, 601
BccI CCATC 2 cut(s) 388, 731
BceAI ACGGC 1 cut(s) 301
BclI TGATCA 1 cut(s) 744
BcoDI GTCTC 2 cut(s) 493, 707
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 3 cut(s) 369, 451, 615
BfoI RGCGCY 1 cut(s) 555
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 97, 360, 615
BlsI GCNGC 3 cut(s) 98, 361, 616
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 2 cut(s) 160, 610
BpiI GAAGAC 1 cut(s) 504
BpmI CTGGAG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 260
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 162, 260
BseMII CTCAG 2 cut(s) 504, 668
BseXI GCAGC 3 cut(s) 83, 371, 601
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 162, 260
BsmAI GTCTC 2 cut(s) 493, 707
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 1 cut(s) 425
Bsp143I GATC 5 cut(s) 337, 560, 688, 729, 744
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 2 cut(s) 503, 667
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 619
BspTI CTTAAG 1 cut(s) 41
BssMI GATC 5 cut(s) 337, 560, 688, 729, 744
BssNI GRCGYC 1 cut(s) 153
Bst4CI ACNGT 6 cut(s) 16, 75, 191, 722, 759, 768
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 490, 654
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 555
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 5 cut(s) 340, 563, 691, 732, 747
BstMAI GTCTC 2 cut(s) 493, 707
BstMBI GATC 5 cut(s) 337, 560, 688, 729, 744
BstMWI GCNNNNNNNGC 2 cut(s) 365, 620
BstSFI CTRYAG 3 cut(s) 369, 451, 615
BstV1I GCAGC 3 cut(s) 83, 371, 601
BstV2I GAAGAC 1 cut(s) 504
BstXI CCANNNNNNTGG 1 cut(s) 394
BsuRI GGCC 1 cut(s) 425
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 94
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 554
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 181
CviAII CATG 5 cut(s) 80, 365, 421, 427, 610
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 490, 654
DpnI GATC 5 cut(s) 339, 562, 690, 731, 746
DpnII GATC 5 cut(s) 337, 560, 688, 729, 744
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47III AGCGCT 1 cut(s) 553
FaeI CATG 5 cut(s) 83, 368, 424, 430, 613
FatI CATG 5 cut(s) 79, 364, 420, 426, 609
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 1 cut(s) 744
Fnu4HI GCNGC 3 cut(s) 97, 360, 615
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 3 cut(s) 97, 360, 615
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 553
GluI GCNGC 3 cut(s) 97, 360, 615
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 555
HaeIII GGCC 1 cut(s) 425
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 5 cut(s) 83, 368, 424, 430, 613
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 2 cut(s) 4, 83
HphI GGTGA 2 cut(s) 485, 739
Hpy166II GTNNAC 3 cut(s) 183, 404, 585
Hpy188I TCNGA 6 cut(s) 137, 309, 393, 493, 764, 773
Hpy188III TCNNGA 3 cut(s) 80, 244, 692
Hpy8I GTNNAC 3 cut(s) 183, 404, 585
Hpy99I CGWCG 1 cut(s) 768
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 6 cut(s) 16, 75, 191, 722, 759, 768
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 9 cut(s) 99, 143, 173, 276, 359, 430, 524, 579, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 620
HpyF3I CTNAG 2 cut(s) 490, 654
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 5 cut(s) 83, 368, 424, 430, 613
HspAI GCGC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 744
Kzo9I GATC 5 cut(s) 337, 560, 688, 729, 744
LmnI GCTCC 2 cut(s) 127, 310
LpnPI CCDG 4 cut(s) 138, 219, 229, 611
Lsp1109I GCAGC 3 cut(s) 83, 371, 601
LweI GCATC 2 cut(s) 160, 610
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 4 cut(s) 214, 219, 473, 753
MalI GATC 5 cut(s) 339, 562, 690, 731, 746
MboI GATC 5 cut(s) 337, 560, 688, 729, 744
MboII GAAGA 4 cut(s) 13, 188, 504, 584
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 5 cut(s) 104, 459, 517, 532, 566
MluNI TGGCCA 1 cut(s) 425
MmeI TCCRAC 2 cut(s) 245, 419
MnlI CCTC 2 cut(s) 57, 335
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
MseI TTAA 2 cut(s) 42, 531
MslI CAYNNNNRTG 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 581
MwoI GCNNNNNNNGC 2 cut(s) 365, 620
NdeII GATC 5 cut(s) 337, 560, 688, 729, 744
NlaIII CATG 5 cut(s) 83, 368, 424, 430, 613
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 219, 473
PagI TCATGA 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 4, 83
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 3 cut(s) 98, 361, 616
PspN4I GGNNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 619
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 2 cut(s) 42, 531
SatI GCNGC 3 cut(s) 97, 360, 615
Sau3AI GATC 5 cut(s) 337, 560, 688, 729, 744
SfaNI GCATC 2 cut(s) 160, 610
SfcI CTRYAG 3 cut(s) 369, 451, 615
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 5 cut(s) 104, 459, 517, 532, 566
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 353
TaaI ACNGT 6 cut(s) 16, 75, 191, 722, 759, 768
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 340
TaqII GACCGA 1 cut(s) 498
TasI AATT 5 cut(s) 104, 459, 517, 532, 566
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 2 cut(s) 4, 83
Tru1I TTAA 2 cut(s) 42, 531
Tru9I TTAA 2 cut(s) 42, 531
TseFI GTSAC 2 cut(s) 219, 473
TseI GCWGC 3 cut(s) 96, 359, 614
Tsp45I GTSAC 2 cut(s) 219, 473
TspDTI ATGAA 2 cut(s) 68, 75
Van91I CCANNNNNTGG 1 cut(s) 162
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 3 cut(s) 459, 517, 566
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.