Prupe.4G245300_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000204
Physical Location & Seq
Reverse (-)
16271928 .. 16272227
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G245300.1

Sequence Viewer

Length: 300 bp
ATGGTGATTAAATGGCATCCCCCTCCCACTGGTTGGATTAAAATTAACTTTGATGGGTCTCTCATGAACTCTCAAGGTTCCATAGGCTTTGTCATCCGGAACTGCGATGGCCATGTCCTTTTAGCTGGCTCTAATAACGTTGGAGAGAATTCCATAAATGTGGCTGAAAGCATTGCTCTTTGGGATGGTCTTGCTGTTGCTATTGAGAGGGGTTGGGATCAAATCGTTGTTGAAGGTGATTCTAAACTCGTTATTGATAGTATCCTTAAAAAAGCAAGTCCCCCTTGGAGCATCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

100

Amino Acids

10.72

Weight (kDa)

5.1

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 96
AclI AACGTT 1 cut(s) 138
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 29, 33
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 225
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 16, 248
BalI TGGCCA 1 cut(s) 111
BccI CCATC 3 cut(s) 47, 101, 179
BciVI GTATCC 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 33
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 4 cut(s) 16, 93, 190, 291
BseLI CCNNNNNNNGG 2 cut(s) 29, 33
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 34
BshFI GGCC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 29, 33
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 63
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 217
BspANI GGCC 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 96
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 127
BstF5I GGATG 4 cut(s) 16, 93, 190, 291
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 160
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 4 cut(s) 16, 93, 190, 291
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 63
CviAII CATG 2 cut(s) 64, 113
CviJI RGCY 5 cut(s) 87, 111, 125, 129, 164
CviKI_1 RGCY 5 cut(s) 87, 111, 125, 129, 164
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 67, 116
FaiI YATR 4 cut(s) 65, 83, 114, 155
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 264
FatI CATG 2 cut(s) 63, 112
FokI GGATG 4 cut(s) 3, 80, 197, 278
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 97
Hin1II CATG 2 cut(s) 67, 116
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 97
HphI GGTGA 2 cut(s) 16, 248
Hpy188III TCNNGA 2 cut(s) 64, 97
HpyAV CCTTC 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 67, 116
Kpn2I TCCGGA 1 cut(s) 96
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 3 cut(s) 15, 110, 111
LweI GCATC 1 cut(s) 25
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 2 cut(s) 42, 148
MluNI TGGCCA 1 cut(s) 111
MmeI TCCRAC 2 cut(s) 14, 121
MnlI CCTC 2 cut(s) 33, 201
Mox20I TGGCCA 1 cut(s) 111
MroI TCCGGA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 111
MseI TTAA 4 cut(s) 9, 39, 45, 267
MslI CAYNNNNRTG 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 111
MspI CCGG 1 cut(s) 97
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 67, 116
NlaIV GGNNCC 1 cut(s) 79
PagI TCATGA 1 cut(s) 63
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 4 cut(s) 9, 39, 45, 267
Sau3AI GATC 1 cut(s) 217
SetI ASST 4 cut(s) 79, 127, 141, 238
SfaNI GCATC 1 cut(s) 25
SgeI CNNG 9 cut(s) 42, 76, 86, 109, 125, 138, 203, 260, 288
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 2 cut(s) 42, 148
StyI CCWWGG 1 cut(s) 284
TaiI ACGT 1 cut(s) 141
TasI AATT 2 cut(s) 42, 148
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 4 cut(s) 9, 39, 45, 267
Tru9I TTAA 4 cut(s) 9, 39, 45, 267
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.