histone deacetylation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PAH | PF02671 | 39 - 82 | 1.1e-15 | Paired amphipathic helix repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 65 |
| AciI | CCGC | 1 cut(s) | 134 |
| AclWI | GGATC | 1 cut(s) | 300 |
| AcsI | RAATTY | 2 cut(s) | 95, 145 |
| AflIII | ACRYGT | 2 cut(s) | 22, 63 |
| AgsI | TTSAA | 2 cut(s) | 235, 299 |
| AluBI | AGCT | 1 cut(s) | 155 |
| AluI | AGCT | 1 cut(s) | 155 |
| AlwI | GGATC | 1 cut(s) | 300 |
| ApoI | RAATTY | 2 cut(s) | 95, 145 |
| BccI | CCATC | 1 cut(s) | 167 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 113, 147 |
| BsaBI | GATNNNNATC | 1 cut(s) | 355 |
| BsaJI | CCNNGG | 1 cut(s) | 44 |
| Bse8I | GATNNNNATC | 1 cut(s) | 355 |
| BseDI | CCNNGG | 1 cut(s) | 44 |
| BseGI | GGATG | 1 cut(s) | 178 |
| BseJI | GATNNNNATC | 1 cut(s) | 355 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| Bsh1236I | CGCG | 1 cut(s) | 65 |
| BsmI | GAATGC | 1 cut(s) | 239 |
| Bsp143I | GATC | 2 cut(s) | 292, 350 |
| BspACI | CCGC | 1 cut(s) | 134 |
| BspFNI | CGCG | 1 cut(s) | 65 |
| BspHI | TCATGA | 1 cut(s) | 138 |
| BspPI | GGATC | 1 cut(s) | 300 |
| BssECI | CCNNGG | 1 cut(s) | 44 |
| BssMI | GATC | 2 cut(s) | 292, 350 |
| Bst6I | CTCTTC | 1 cut(s) | 311 |
| BstDEI | CTNAG | 1 cut(s) | 77 |
| BstF5I | GGATG | 1 cut(s) | 178 |
| BstFNI | CGCG | 1 cut(s) | 65 |
| BstKTI | GATC | 2 cut(s) | 295, 353 |
| BstMBI | GATC | 2 cut(s) | 292, 350 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BstNSI | RCATGY | 1 cut(s) | 26 |
| BstUI | CGCG | 1 cut(s) | 65 |
| BstX2I | RGATCY | 1 cut(s) | 292 |
| BstYI | RGATCY | 1 cut(s) | 292 |
| BtsCI | GGATG | 1 cut(s) | 178 |
| BtsI | GCAGTG | 1 cut(s) | 309 |
| BtsIMutI | CAGTG | 1 cut(s) | 309 |
| CciI | TCATGA | 1 cut(s) | 138 |
| CseI | GACGC | 1 cut(s) | 71 |
| CviAII | CATG | 3 cut(s) | 23, 139, 399 |
| CviJI | RGCY | 3 cut(s) | 83, 92, 155 |
| CviKI_1 | RGCY | 3 cut(s) | 83, 92, 155 |
| DdeI | CTNAG | 1 cut(s) | 77 |
| DpnI | GATC | 2 cut(s) | 294, 352 |
| DpnII | GATC | 2 cut(s) | 292, 350 |
| DraI | TTTAAA | 1 cut(s) | 151 |
| Eam1104I | CTCTTC | 1 cut(s) | 311 |
| EarI | CTCTTC | 1 cut(s) | 311 |
| EcoT22I | ATGCAT | 2 cut(s) | 73, 241 |
| FaeI | CATG | 3 cut(s) | 26, 142, 402 |
| FaiI | YATR | 9 cut(s) | 24, 69, 73, 102, 120, 140, 182, 213, 400 |
| FatI | CATG | 3 cut(s) | 22, 138, 398 |
| FokI | GGATG | 1 cut(s) | 185 |
| HgaI | GACGC | 1 cut(s) | 71 |
| Hin1II | CATG | 3 cut(s) | 26, 142, 402 |
| Hpy166II | GTNNAC | 3 cut(s) | 20, 41, 307 |
| Hpy188I | TCNGA | 1 cut(s) | 413 |
| Hpy188III | TCNNGA | 2 cut(s) | 139, 296 |
| Hpy8I | GTNNAC | 3 cut(s) | 20, 41, 307 |
| HpyAV | CCTTC | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 3 cut(s) | 71, 180, 239 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 1 cut(s) | 77 |
| Hsp92II | CATG | 3 cut(s) | 26, 142, 402 |
| Kzo9I | GATC | 2 cut(s) | 292, 350 |
| LpnPI | CCDG | 1 cut(s) | 270 |
| MaeIII | GTNAC | 1 cut(s) | 340 |
| MalI | GATC | 2 cut(s) | 294, 352 |
| MboI | GATC | 2 cut(s) | 292, 350 |
| MboII | GAAGA | 6 cut(s) | 171, 328, 354, 357, 360, 363 |
| MflI | RGATCY | 1 cut(s) | 292 |
| MluCI | AATT | 4 cut(s) | 95, 145, 162, 268 |
| MluI | ACGCGT | 1 cut(s) | 63 |
| MmeI | TCCRAC | 1 cut(s) | 7 |
| MnlI | CCTC | 6 cut(s) | 5, 39, 81, 181, 283, 312 |
| Mph1103I | ATGCAT | 2 cut(s) | 73, 241 |
| MseI | TTAA | 2 cut(s) | 150, 204 |
| Mva1269I | GAATGC | 1 cut(s) | 239 |
| MvnI | CGCG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NdeII | GATC | 2 cut(s) | 292, 350 |
| NlaIII | CATG | 3 cut(s) | 26, 142, 402 |
| NsiI | ATGCAT | 2 cut(s) | 73, 241 |
| NspI | RCATGY | 1 cut(s) | 26 |
| PagI | TCATGA | 1 cut(s) | 138 |
| PciI | ACATGT | 1 cut(s) | 22 |
| PctI | GAATGC | 1 cut(s) | 239 |
| PscI | ACATGT | 1 cut(s) | 22 |
| PsuI | RGATCY | 1 cut(s) | 292 |
| SaqAI | TTAA | 2 cut(s) | 150, 204 |
| Sau3AI | GATC | 2 cut(s) | 292, 350 |
| SetI | ASST | 2 cut(s) | 157, 192 |
| Sse9I | AATT | 4 cut(s) | 95, 145, 162, 268 |
| SsiI | CCGC | 1 cut(s) | 134 |
| TaqI | TCGA | 1 cut(s) | 157 |
| TasI | AATT | 4 cut(s) | 95, 145, 162, 268 |
| Tru1I | TTAA | 2 cut(s) | 150, 204 |
| Tru9I | TTAA | 2 cut(s) | 150, 204 |
| TscAI | CASTG | 1 cut(s) | 316 |
| TspDTI | ATGAA | 2 cut(s) | 89, 387 |
| TspGWI | ACGGA | 1 cut(s) | 367 |
| TspRI | CASTG | 1 cut(s) | 316 |
| XapI | RAATTY | 2 cut(s) | 95, 145 |
| XceI | RCATGY | 1 cut(s) | 26 |
| Zsp2I | ATGCAT | 2 cut(s) | 73, 241 |