Rmu_sc0006513.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006513.1
OG0000204
Physical Location & Seq
Forward (+)
23156 .. 27824
4669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006513.1_g000006.1.cds

Sequence Viewer

Length: 795 bp
atgaaccggttcggattctgcgatgagctgaatggatcgaccgatggagatgaacgattgagccacatgagtactcgtgaatactcactgctgcctaaaggatggagcagagctagcacagctactccgcctcaccagttacacgtgaagcttaattttgatggttcagtcagacaaaatgttgctaccattggctttctgcttcaaaactctgacggaaacctgttgtttgctgcttgtcgtcggttaggtagcactaatactcttgttgctaaagctacagccagagccggtcctgagaattttcaggctcaggcccgattcgactccactgtccttacacaaccacgccctgaccactcctgcaccagcctcaaactccgacgccggaatccggtcacccgtccggtgcttgattcaggattccggattccagtgaccgatcgtcggattccagtgaccggtcgtcggagtccgccaccggagtcccggccgggcactggattccggattccagtgactgatcgccggattccagtgaccggtcgtcggagtcagccaccggagtccccggccgggcactggtcaggcctggctacagccttaagggatggattgcatacggcgttgttacataagtatcaaaatgtcattgtggaaggtgagtctaaacttctcttggattgcattcacttgaggcctgctatcccatggaggattaaggctctagtacaagatatcaacaggcctgctactcaatttcatttagttgtgtttcgacacatctaccgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.54

Weight (kDa)

11.02

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccIII TCCGGA 2 cut(s) 426, 507
AciI CCGC 2 cut(s) 128, 476
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 2 cut(s) 491, 573
AcsI RAATTY 1 cut(s) 301
AcvI CACGTG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 385
AfaI GTAC 2 cut(s) 73, 732
AfiI CCNNNNNNNGG 9 cut(s) 394, 447, 461, 468, 500, 542, 549, 576, 582
AflII CTTAAG 1 cut(s) 604
AflIII ACRYGT 1 cut(s) 142
AgeI ACCGGT 3 cut(s) 6, 461, 542
AgsI TTSAA 1 cut(s) 206
AhdI GACNNNNNGTC 3 cut(s) 444, 465, 546
AjnI CCWGG 1 cut(s) 591
AluBI AGCT 5 cut(s) 28, 113, 122, 151, 278
AluI AGCT 5 cut(s) 28, 113, 122, 151, 278
AlwI GGATC 1 cut(s) 43
AlwNI CAGNNNCTG 1 cut(s) 521
Aor13HI TCCGGA 2 cut(s) 426, 507
AoxI GGCC 6 cut(s) 315, 491, 573, 589, 698, 746
ApeKI GCWGC 2 cut(s) 91, 233
ApoI RAATTY 1 cut(s) 301
AsiGI ACCGGT 3 cut(s) 6, 461, 542
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 293, 316
AsuC2I CCSGG 4 cut(s) 490, 495, 572, 577
AsuHPI GGTGA 3 cut(s) 125, 391, 674
AsuNHI GCTAGC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 2 cut(s) 500, 582
BaeI ACNNNNGTAYC 2 cut(s) 623, 656
BauI CACGAG 1 cut(s) 75
BbrPI CACGTG 1 cut(s) 145
BbvI GCAGC 2 cut(s) 78, 220
BccI CCATC 4 cut(s) 38, 96, 155, 605
BceAI ACGGC 1 cut(s) 639
BciT130I CCWGG 1 cut(s) 593
BcnI CCSGG 4 cut(s) 490, 495, 572, 577
BfaI CTAG 2 cut(s) 114, 728
BfmI CTRYAG 2 cut(s) 279, 597
BfrI CTTAAG 1 cut(s) 604
BisI GCNGC 2 cut(s) 92, 234
BlsI GCNGC 2 cut(s) 93, 235
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 5 cut(s) 490, 495, 572, 577, 593
Bme18I GGWCC 1 cut(s) 293
BmeRI GACNNNNNGTC 3 cut(s) 444, 465, 546
BmgT120I GGNCC 2 cut(s) 293, 316
BmrFI CCNGG 5 cut(s) 490, 495, 572, 577, 593
BmtI GCTAGC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 715
BpuMI CCSGG 4 cut(s) 490, 495, 572, 577
BsaAI YACGTR 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 385
BsaJI CCNNGG 2 cut(s) 570, 710
BsaWI WCCGGW 9 cut(s) 6, 394, 406, 426, 461, 481, 507, 542, 562
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 9 cut(s) 394, 447, 461, 468, 500, 542, 549, 576, 582
Bse118I RCCGGY 4 cut(s) 6, 290, 461, 542
Bse1I ACTGG 7 cut(s) 136, 434, 455, 505, 515, 536, 587
BseAI TCCGGA 2 cut(s) 426, 507
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 570, 710
BseGI GGATG 2 cut(s) 107, 616
BseLI CCNNNNNNNGG 9 cut(s) 394, 447, 461, 468, 500, 542, 549, 576, 582
BseMII CTCAG 2 cut(s) 288, 326
BseNI ACTGG 7 cut(s) 136, 434, 455, 505, 515, 536, 587
BseSI GKGCMC 2 cut(s) 500, 582
BseX3I CGGCCG 2 cut(s) 491, 573
BseXI GCAGC 2 cut(s) 78, 220
BsgI GTGCAG 1 cut(s) 349
Bsh1285I CGRYCG 6 cut(s) 42, 445, 466, 494, 547, 576
BshFI GGCC 6 cut(s) 317, 493, 575, 591, 700, 748
BshTI ACCGGT 3 cut(s) 6, 461, 542
BsiEI CGRYCG 6 cut(s) 42, 445, 466, 494, 547, 576
BslFI GGGAC 2 cut(s) 472, 553
BslI CCNNNNNNNGG 9 cut(s) 394, 447, 461, 468, 500, 542, 549, 576, 582
BsmFI GGGAC 2 cut(s) 472, 553
BsmI GAATGC 1 cut(s) 687
BsnI GGCC 6 cut(s) 317, 493, 575, 591, 700, 748
Bsp1286I GDGCHC 2 cut(s) 500, 582
Bsp13I TCCGGA 2 cut(s) 426, 507
Bsp143I GATC 3 cut(s) 35, 442, 523
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 2 cut(s) 128, 476
BspANI GGCC 6 cut(s) 317, 493, 575, 591, 700, 748
BspCNI CTCAG 2 cut(s) 289, 325
BspEI TCCGGA 2 cut(s) 426, 507
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 1 cut(s) 43
BspTI CTTAAG 1 cut(s) 604
BsrFI RCCGGY 4 cut(s) 6, 290, 461, 542
BsrI ACTGG 7 cut(s) 136, 434, 455, 505, 515, 536, 587
BssAI RCCGGY 4 cut(s) 6, 290, 461, 542
BssECI CCNNGG 2 cut(s) 570, 710
BssMI GATC 3 cut(s) 35, 442, 523
BssNI GRCGYC 1 cut(s) 385
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 710
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 1 cut(s) 334
BstACI GRCGYC 1 cut(s) 385
BstAFI CTTAAG 1 cut(s) 604
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 3 cut(s) 115, 702, 750
BstDEI CTNAG 2 cut(s) 297, 312
BstDSI CCRYGG 1 cut(s) 710
BstEII GGTNACC 1 cut(s) 397
BstF5I GGATG 2 cut(s) 107, 616
BstKTI GATC 3 cut(s) 38, 445, 526
BstMBI GATC 3 cut(s) 35, 442, 523
BstMCI CGRYCG 6 cut(s) 42, 445, 466, 494, 547, 576
BstMWI GCNNNNNNNGC 2 cut(s) 114, 119
BstNI CCWGG 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 397
BstSCI CCNGG 5 cut(s) 488, 493, 570, 575, 591
BstSFI CTRYAG 2 cut(s) 279, 597
BstSLI GKGCMC 2 cut(s) 500, 582
BstV1I GCAGC 2 cut(s) 78, 220
BstZI CGGCCG 2 cut(s) 491, 573
BsuRI GGCC 6 cut(s) 317, 493, 575, 591, 700, 748
BtgI CCRYGG 1 cut(s) 710
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 107, 616
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 8 cut(s) 86, 330, 441, 462, 498, 522, 543, 580
Cac8I GCNNGC 3 cut(s) 115, 702, 750
CaiI CAGNNNCTG 1 cut(s) 521
Cfr10I RCCGGY 4 cut(s) 6, 290, 461, 542
Cfr13I GGNCC 2 cut(s) 293, 316
CseI GACGC 1 cut(s) 393
Csp6I GTAC 2 cut(s) 72, 731
CspAI ACCGGT 3 cut(s) 6, 461, 542
CviAII CATG 2 cut(s) 67, 711
CviQI GTAC 2 cut(s) 72, 731
DdeI CTNAG 2 cut(s) 297, 312
DpnI GATC 3 cut(s) 37, 444, 525
DpnII GATC 3 cut(s) 35, 442, 523
DrdI GACNNNNNNGTC 1 cut(s) 332
DriI GACNNNNNGTC 3 cut(s) 444, 465, 546
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 491, 573
EagI CGGCCG 2 cut(s) 491, 573
Eam1105I GACNNNNNGTC 3 cut(s) 444, 465, 546
EciI GGCGGA 2 cut(s) 117, 465
EclXI CGGCCG 2 cut(s) 491, 573
Eco130I CCWWGG 1 cut(s) 710
Eco147I AGGCCT 3 cut(s) 591, 700, 748
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 1 cut(s) 293
Eco52I CGGCCG 2 cut(s) 491, 573
Eco72I CACGTG 1 cut(s) 145
Eco91I GGTNACC 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 591
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 2 cut(s) 70, 714
FaiI YATR 4 cut(s) 68, 621, 636, 712
FaqI GGGAC 2 cut(s) 472, 553
FatI CATG 2 cut(s) 66, 710
Fnu4HI GCNGC 2 cut(s) 92, 234
FokI GGATG 2 cut(s) 114, 623
Fsp4HI GCNGC 2 cut(s) 92, 234
FspBI CTAG 2 cut(s) 114, 728
GluI GCNGC 2 cut(s) 92, 234
HaeIII GGCC 6 cut(s) 317, 493, 575, 591, 700, 748
HgaI GACGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 385
Hin1II CATG 2 cut(s) 70, 714
HindIII AAGCTT 1 cut(s) 149
HphI GGTGA 3 cut(s) 125, 391, 674
Hpy188I TCNGA 7 cut(s) 14, 173, 214, 383, 450, 471, 552
Hpy188III TCNNGA 5 cut(s) 77, 296, 420, 427, 508
Hpy99I CGWCG 5 cut(s) 246, 387, 450, 471, 552
HpyAV CCTTC 1 cut(s) 653
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 366, 619, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 119
HpyF3I CTNAG 2 cut(s) 297, 312
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 385
Hsp92II CATG 2 cut(s) 70, 714
Kpn2I TCCGGA 2 cut(s) 426, 507
Kzo9I GATC 3 cut(s) 35, 442, 523
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 2 cut(s) 78, 220
MaeI CTAG 2 cut(s) 114, 728
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 7 cut(s) 138, 397, 436, 457, 517, 538, 630
MalI GATC 3 cut(s) 37, 444, 525
MboI GATC 3 cut(s) 35, 442, 523
MhlI GDGCHC 2 cut(s) 500, 582
MluCI AATT 3 cut(s) 154, 301, 758
MlyI GAGTC 6 cut(s) 320, 481, 494, 562, 575, 674
MmeI TCCRAC 4 cut(s) 406, 428, 449, 530
MnlI CCTC 4 cut(s) 141, 383, 690, 708
MroI TCCGGA 2 cut(s) 426, 507
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 153, 605, 720
MspCI CTTAAG 1 cut(s) 604
MspR9I CCNGG 5 cut(s) 490, 495, 572, 577, 593
Mva1269I GAATGC 1 cut(s) 687
MvaI CCWGG 1 cut(s) 593
MwoI GCNNNNNNNGC 2 cut(s) 114, 119
NciI CCSGG 4 cut(s) 490, 495, 572, 577
NcoI CCATGG 1 cut(s) 710
NdeII GATC 3 cut(s) 35, 442, 523
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 70, 714
NmuCI GTSAC 5 cut(s) 397, 436, 457, 517, 538
PceI AGGCCT 3 cut(s) 591, 700, 748
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 687
PdmI GAANNNNTTC 1 cut(s) 8
PinAI ACCGGT 3 cut(s) 6, 461, 542
PkrI GCNGC 2 cut(s) 93, 235
Ple19I CGATCG 1 cut(s) 445
PleI GAGTC 6 cut(s) 320, 480, 493, 561, 574, 673
PmaCI CACGTG 1 cut(s) 145
PmlI CACGTG 1 cut(s) 145
PpsI GAGTC 6 cut(s) 320, 480, 493, 561, 574, 673
Ppu21I YACGTR 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 591
PspCI CACGTG 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 591
PspPI GGNCC 2 cut(s) 293, 316
PstNI CAGNNNCTG 1 cut(s) 521
PvuI CGATCG 1 cut(s) 445
RsaI GTAC 2 cut(s) 73, 732
RsaNI GTAC 2 cut(s) 72, 731
SaqAI TTAA 3 cut(s) 153, 605, 720
SatI GCNGC 2 cut(s) 92, 234
Sau3AI GATC 3 cut(s) 35, 442, 523
Sau96I GGNCC 2 cut(s) 293, 316
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 6 cut(s) 320, 481, 494, 562, 575, 674
ScrFI CCNGG 5 cut(s) 490, 495, 572, 577, 593
SduI GDGCHC 2 cut(s) 500, 582
SetI ASST 9 cut(s) 30, 115, 124, 147, 153, 225, 253, 280, 664
SfcI CTRYAG 2 cut(s) 279, 597
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 604, 694
SmoI CTYRAG 2 cut(s) 604, 694
Sse9I AATT 3 cut(s) 154, 301, 758
SseBI AGGCCT 3 cut(s) 591, 700, 748
SsiI CCGC 2 cut(s) 128, 476
SspMI CTAG 2 cut(s) 114, 728
StuI AGGCCT 3 cut(s) 591, 700, 748
StyD4I CCNGG 5 cut(s) 488, 493, 570, 575, 591
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 147
TaqI TCGA 3 cut(s) 38, 324, 778
TaqII GACCGA 2 cut(s) 56, 455
TasI AATT 3 cut(s) 154, 301, 758
TatI WGTACW 2 cut(s) 71, 730
Tru1I TTAA 3 cut(s) 153, 605, 720
Tru9I TTAA 3 cut(s) 153, 605, 720
TscAI CASTG 8 cut(s) 93, 337, 441, 462, 505, 522, 543, 587
TseFI GTSAC 5 cut(s) 397, 436, 457, 517, 538
TseI GCWGC 2 cut(s) 91, 233
Tsp45I GTSAC 5 cut(s) 397, 436, 457, 517, 538
TspDTI ATGAA 3 cut(s) 17, 66, 752
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 8 cut(s) 93, 337, 441, 462, 505, 522, 543, 587
Vha464I CTTAAG 1 cut(s) 604
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 114, 728
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.