Rorug05G0284800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000204
Physical Location & Seq
Reverse (-)
32691739 .. 32698439
6701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0284800.1

Sequence Viewer

Length: 1755 bp
ATGGAGGCGCCGCCAATTGTTTCCCCTACCAAAACGCTGCCGTTCCGATCAGCTTCCCCTTCCTCCTCTCTTCTCTTTCGCCGCAAGCATCGTCTCAATTGCCGCCGCAGACCTTCTAGAAGCTTCACCGTCCGTGCCTCCTCCGCTGCTGGTGATGATTCAGTGGTGACTCTGCTTGACTACGGTGCCGGCAATGTTCGGAGTGTCAGGAACGCCATTCGCCGCCTCGGCTTCCAAGTCAAAGATGTCCAAACTCCCAAGGATATTTTGAATGCCGACCGCCTAATCTTTCCTGGTGTGGGGGCTTTCGCTGCGGCCATGGATGTGCTGAGCAAGAATGGGATGGCTGAAGCGCTCTGTGAATATATTGAGAAAGATCGGCCGTTTCTAGGCATTTGTCTTGGACTTCAGCTCCTTTTTGAATCCAGTGAGGAAAAGGGACAAGTGAGTGGTCTTGGCTTGATACCTGGAGTGGTTGGGCGTTTTGACTCATCAAATGGTGTTCGAGTGCCACATATCGGGTGGAATGCTTTGCAGATTAGAGAAGACTCTTTAATTTTGGATGATGTTGGAACCCATCACGTCTATTTCGTCCACTCTTACAGAGCAATGCCATCGGATGATAACAAAGAATGGGTTTCATCTACCTGCAACTATGGTGACAATTTCATTGCATCTGTTAGAAGGGGAAATGTGCATGCAGTTCAATTCCACCCTGAGAAAAGTGGAGATGTTGGTCTTTCCATATTGAGAAGATTTCTCTATCCAAACTCACCCTTGGAGAAGAAGCCCACTGAAGGGAAGGGTTCCAAACTTGCAAAGAGGGTTATTGCTTGTCTGGATGTGAGGACGAATGACAAAGGAGATCTTGTTGTAACCAAAGGAGACCAATATGACGTAAGAGAGCATACAAAAGAGAATGAGGTGAGAGAACTTGGAAAGCCTGTGGAGCTTGCTGGACAGTATTACACAGATGGAGCTGATGAGGTCAGCTTTCTGAATATTACCGGTTTCCGGGACTTCCCTTTGGGTGACTTGCCTATGCTACAGGTATTGAGATATGCGTCAGAAAATGTTTTTGTGCCATTAACAGTTGGAGGTGGCATTAGAGATTTTACCGATGCAACTGGCAGGCACTATTCTAGTTTGGAAGTTGCTTCAGAATATTTTAGATGTGGGGCTGATAAGATCTCCATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAAGAACTGGAGTGAAAAGTGGAAAAAGCAGCTTAGAGCAGATATCCAGAGTTTACGGAAATCAGGCTGTGGTTGTAAGCATTGATCCTTGCAGAGTGTATGTTAAAAATCAAAATGATGTAAAGTTCAAGACTATAAGAGTAACAAATCCAGGTCCAAATGGTGAAGAATATGCTTGGTATCAGTGTACAGTTAGCGGTGGGCGGGAAGGCAGACCAATTGGAGCATATGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATTTTGCTAAACTGCATTGATTGCGATGGTCAAGGGAAAGGATTTGATATAGATCTAGTAAAGCTCATCTCTGATGCTGTGACCATTCCCGTGATTGCAAGTAGTGGGGCTGGTGGTGTTGAACACTTCTCAGAGGTTTTCATGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATATTCCATCGCAAGGAGGTGCCAATTCATTCTGTAAAGGAGCACTTGCTAAAGGAAGGCATAGAAGTCAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

584

Amino Acids

63.9

Weight (kDa)

6.69

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase PF00117 58 - 254 1.1e-23 Glutamine amidotransferase class-I
SNO PF01174 64 - 244 1.1e-08 SNO glutamine amidotransferase family
GATase_3 PF07685 79 - 157 5.2e-09 CobB/CobQ-like glutamine amidotransferase domain
His_biosynth PF00977 275 - 566 1.1e-40 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 656
AccB1I GGYRCC 3 cut(s) 7, 185, 1696
AclWI GGATC 1 cut(s) 1310
AcoI YGGCCR 2 cut(s) 315, 380
AcsI RAATTY 1 cut(s) 1500
AcuI CTGAAG 4 cut(s) 369, 392, 816, 1143
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 1420
AfeI AGCGCT 1 cut(s) 354
AfiI CCNNNNNNNGG 7 cut(s) 299, 389, 518, 797, 798, 1014, 1690
AgeI ACCGGT 1 cut(s) 1007
AgsI TTSAA 5 cut(s) 271, 422, 707, 1360, 1622
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 3 cut(s) 292, 466, 1381
Alw21I GWGCWC 1 cut(s) 1722
Alw26I GTCTC 2 cut(s) 98, 879
AlwI GGATC 1 cut(s) 1310
AlwNI CAGNNNCTG 1 cut(s) 1752
Aor51HI AGCGCT 1 cut(s) 354
AoxI GGCC 2 cut(s) 315, 380
ApeKI GCWGC 7 cut(s) 37, 146, 311, 1217, 1260, 1661, 1670
ApoI RAATTY 1 cut(s) 1500
AsiGI ACCGGT 1 cut(s) 1007
AspLEI GCGC 2 cut(s) 10, 355
AspS9I GGNCC 1 cut(s) 1385
AsuC2I CCSGG 1 cut(s) 1016
AsuHPI GGTGA 8 cut(s) 118, 164, 178, 671, 765, 937, 1043, 1406
AvaII GGWCC 1 cut(s) 1385
BanI GGYRCC 3 cut(s) 7, 185, 1696
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 1722
BbvI GCAGC 7 cut(s) 24, 133, 298, 1204, 1272, 1648, 1657
BccI CCATC 6 cut(s) 337, 585, 622, 968, 1520, 1692
BceAI ACGGC 2 cut(s) 25, 367
BcgI CGANNNNNNTGC 2 cut(s) 597, 631
BciT130I CCWGG 3 cut(s) 294, 468, 1383
BcnI CCSGG 1 cut(s) 1016
BcoDI GTCTC 2 cut(s) 98, 879
BfaI CTAG 4 cut(s) 117, 389, 1143, 1556
BfmI CTRYAG 2 cut(s) 1046, 1218
BfoI RGCGCY 2 cut(s) 11, 356
BfuAI ACCTGC 1 cut(s) 656
BglI GCCNNNNNGGC 1 cut(s) 228
BglII AGATCT 3 cut(s) 865, 1188, 1552
BlpI GCTNAGC 1 cut(s) 329
Bme1390I CCNGG 4 cut(s) 294, 468, 1016, 1383
Bme18I GGWCC 1 cut(s) 1385
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 1385
BmiI GGNNCC 5 cut(s) 9, 187, 574, 808, 1698
BmrFI CCNGG 4 cut(s) 294, 468, 1016, 1383
BmsI GCATC 6 cut(s) 97, 683, 1111, 1195, 1564, 1664
BpiI GAAGAC 1 cut(s) 552
BpmI CTGGAG 3 cut(s) 489, 1260, 1515
Bpu1102I GCTNAGC 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 1016
BsaBI GATNNNNATC 1 cut(s) 1551
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 879
BsaJI CCNNGG 4 cut(s) 226, 258, 318, 777
BsaWI WCCGGW 1 cut(s) 1007
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 855, 885
Bsc4I CCNNNNNNNGG 7 cut(s) 299, 389, 518, 797, 798, 1014, 1690
Bse118I RCCGGY 2 cut(s) 188, 1007
Bse1I ACTGG 3 cut(s) 426, 1132, 1243
Bse3DI GCAATG 3 cut(s) 199, 615, 669
Bse8I GATNNNNATC 1 cut(s) 1551
BseBI CCWGG 3 cut(s) 294, 468, 1383
BseDI CCNNGG 4 cut(s) 226, 258, 318, 777
BseGI GGATG 5 cut(s) 328, 348, 568, 625, 847
BseJI GATNNNNATC 1 cut(s) 1551
BseLI CCNNNNNNNGG 7 cut(s) 299, 389, 518, 797, 798, 1014, 1690
BseMI GCAATG 3 cut(s) 199, 615, 669
BseMII CTCAG 3 cut(s) 320, 708, 1644
BseNI ACTGG 3 cut(s) 426, 1132, 1243
BseRI GAGGAG 3 cut(s) 55, 130, 1496
BseX3I CGGCCG 1 cut(s) 380
BseXI GCAGC 7 cut(s) 24, 133, 298, 1204, 1272, 1648, 1657
Bsh1285I CGRYCG 2 cut(s) 280, 383
BshFI GGCC 2 cut(s) 317, 382
BshNI GGYRCC 3 cut(s) 7, 185, 1696
BshTI ACCGGT 1 cut(s) 1007
BsiEI CGRYCG 2 cut(s) 280, 383
BsiHKAI GWGCWC 1 cut(s) 1722
BsiSI CCGG 3 cut(s) 189, 1008, 1015
BslFI GGGAC 2 cut(s) 453, 1031
BslI CCNNNNNNNGG 7 cut(s) 299, 389, 518, 797, 798, 1014, 1690
BsmAI GTCTC 2 cut(s) 98, 879
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 453, 1031
BsmI GAATGC 2 cut(s) 277, 532
BsnI GGCC 2 cut(s) 317, 382
Bso31I GGTCTC 1 cut(s) 879
Bsp1286I GDGCHC 1 cut(s) 1722
Bsp1407I TGTACA 1 cut(s) 1418
Bsp143I GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
Bsp1720I GCTNAGC 1 cut(s) 329
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 2 cut(s) 317, 382
BspCNI CTCAG 3 cut(s) 321, 709, 1643
BspHI TCATGA 1 cut(s) 1641
BspLI GGNNCC 5 cut(s) 9, 187, 574, 808, 1698
BspMAI CTGCAG 1 cut(s) 1222
BspMI ACCTGC 1 cut(s) 656
BspPI GGATC 1 cut(s) 1310
BspT107I GGYRCC 3 cut(s) 7, 185, 1696
BspTNI GGTCTC 1 cut(s) 879
BsrDI GCAATG 3 cut(s) 199, 615, 669
BsrFI RCCGGY 2 cut(s) 188, 1007
BsrGI TGTACA 1 cut(s) 1418
BsrI ACTGG 3 cut(s) 426, 1132, 1243
BssAI RCCGGY 2 cut(s) 188, 1007
BssECI CCNNGG 4 cut(s) 226, 258, 318, 777
BssMI GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 3 cut(s) 258, 318, 777
Bst2UI CCWGG 3 cut(s) 294, 468, 1383
Bst4CI ACNGT 5 cut(s) 130, 185, 963, 1093, 1423
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 3 cut(s) 1214, 1521, 1661
BstAUI TGTACA 1 cut(s) 1418
BstC8I GCNNGC 7 cut(s) 86, 190, 699, 954, 1133, 1467, 1675
BstDEI CTNAG 4 cut(s) 329, 717, 1264, 1630
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 5 cut(s) 328, 348, 568, 625, 847
BstH2I RGCGCY 2 cut(s) 11, 356
BstHHI GCGC 2 cut(s) 10, 355
BstKTI GATC 6 cut(s) 50, 379, 868, 1191, 1318, 1555
BstMAI GTCTC 2 cut(s) 98, 879
BstMBI GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
BstMCI CGRYCG 2 cut(s) 280, 383
BstMWI GCNNNNNNNGC 9 cut(s) 143, 228, 311, 949, 1214, 1521, 1661, 1667, 1670
BstNI CCWGG 3 cut(s) 294, 468, 1383
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 4 cut(s) 292, 466, 1014, 1381
BstSFI CTRYAG 2 cut(s) 1046, 1218
BstV1I GCAGC 7 cut(s) 24, 133, 298, 1204, 1272, 1648, 1657
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 3 cut(s) 865, 1188, 1552
BstYI RGATCY 3 cut(s) 865, 1188, 1552
BstZI CGGCCG 1 cut(s) 380
BsuRI GGCC 2 cut(s) 317, 382
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 2 cut(s) 1539, 1670
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 5 cut(s) 328, 348, 568, 625, 847
BtsIMutI CAGTG 4 cut(s) 168, 433, 792, 1421
BveI ACCTGC 1 cut(s) 656
Cac8I GCNNGC 7 cut(s) 86, 190, 699, 954, 1133, 1467, 1675
CaiI CAGNNNCTG 1 cut(s) 1752
CciI TCATGA 1 cut(s) 1641
CfoI GCGC 2 cut(s) 10, 355
Cfr10I RCCGGY 2 cut(s) 188, 1007
Cfr13I GGNCC 1 cut(s) 1385
CseI GACGC 1 cut(s) 1053
Csp6I GTAC 1 cut(s) 1419
CspAI ACCGGT 1 cut(s) 1007
CviAII CATG 3 cut(s) 319, 698, 1642
CviQI GTAC 1 cut(s) 1419
DdeI CTNAG 4 cut(s) 329, 717, 1264, 1630
DinI GGCGCC 1 cut(s) 9
DpnI GATC 6 cut(s) 49, 378, 867, 1190, 1317, 1554
DpnII GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
EaeI YGGCCR 2 cut(s) 315, 380
EagI CGGCCG 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EclXI CGGCCG 1 cut(s) 380
Eco130I CCWWGG 3 cut(s) 258, 318, 777
Eco31I GGTCTC 1 cut(s) 879
Eco32I GATATC 1 cut(s) 1275
Eco47I GGWCC 1 cut(s) 1385
Eco47III AGCGCT 1 cut(s) 354
Eco52I CGGCCG 1 cut(s) 380
Eco57I CTGAAG 4 cut(s) 369, 392, 816, 1143
EcoRII CCWGG 3 cut(s) 292, 466, 1381
EcoRV GATATC 1 cut(s) 1275
EcoT14I CCWWGG 3 cut(s) 258, 318, 777
EcoT22I ATGCAT 1 cut(s) 1657
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
ErhI CCWWGG 3 cut(s) 258, 318, 777
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 3 cut(s) 322, 701, 1645
FalI AAGNNNNNCTT 4 cut(s) 852, 884, 1706, 1738
FaqI GGGAC 2 cut(s) 453, 1031
FatI CATG 3 cut(s) 318, 697, 1641
FauI CCCGC 1 cut(s) 1428
FauNDI CATATG 1 cut(s) 1459
FokI GGATG 5 cut(s) 335, 355, 575, 632, 854
FspBI CTAG 4 cut(s) 117, 389, 1143, 1556
GlaI GCGC 2 cut(s) 9, 354
GsuI CTGGAG 3 cut(s) 489, 1260, 1515
HaeII RGCGCY 2 cut(s) 11, 356
HaeIII GGCC 2 cut(s) 317, 382
HapII CCGG 3 cut(s) 189, 1008, 1015
HgaI GACGC 1 cut(s) 1053
HhaI GCGC 2 cut(s) 10, 355
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 3 cut(s) 322, 701, 1645
Hin6I GCGC 2 cut(s) 8, 353
HinP1I GCGC 2 cut(s) 8, 353
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 6 cut(s) 158, 169, 422, 488, 548, 1749
HpaII CCGG 3 cut(s) 189, 1008, 1015
HphI GGTGA 8 cut(s) 118, 164, 178, 671, 765, 937, 1043, 1406
Hpy166II GTNNAC 3 cut(s) 595, 1285, 1419
Hpy188III TCNNGA 6 cut(s) 117, 208, 839, 1278, 1360, 1642
Hpy8I GTNNAC 3 cut(s) 595, 1285, 1419
HpyAV CCTTC 7 cut(s) 69, 123, 678, 791, 796, 1433, 1727
HpyCH4III ACNGT 5 cut(s) 130, 185, 963, 1093, 1423
HpyCH4IV ACGT 2 cut(s) 582, 897
HpyF10VI GCNNNNNNNGC 9 cut(s) 143, 228, 311, 949, 1214, 1521, 1661, 1667, 1670
HpyF3I CTNAG 4 cut(s) 329, 717, 1264, 1630
HpySE526I ACGT 2 cut(s) 582, 897
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 3 cut(s) 322, 701, 1645
HspAI GCGC 2 cut(s) 8, 353
KasI GGCGCC 1 cut(s) 7
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
LmnI GCTCC 7 cut(s) 417, 949, 977, 1454, 1483, 1490, 1717
Lsp1109I GCAGC 7 cut(s) 24, 133, 298, 1204, 1272, 1648, 1657
LweI GCATC 6 cut(s) 97, 683, 1111, 1195, 1564, 1664
MaeI CTAG 4 cut(s) 117, 389, 1143, 1556
MaeII ACGT 2 cut(s) 582, 897
MaeIII GTNAC 6 cut(s) 166, 659, 874, 1031, 1372, 1579
MalI GATC 6 cut(s) 49, 378, 867, 1190, 1317, 1554
MboI GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
MboII GAAGA 6 cut(s) 62, 557, 765, 796, 1235, 1409
MfeI CAATTG 3 cut(s) 15, 97, 1449
MflI RGATCY 3 cut(s) 865, 1188, 1552
MhlI GDGCHC 1 cut(s) 1722
MluCI AATT 8 cut(s) 15, 97, 555, 664, 707, 1449, 1500, 1701
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 3 cut(s) 163, 482, 542
MmeI TCCRAC 2 cut(s) 550, 1075
Mph1103I ATGCAT 1 cut(s) 1657
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 4 cut(s) 554, 1088, 1232, 1335
MslI CAYNNNNRTG 2 cut(s) 323, 1589
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 3 cut(s) 189, 1008, 1015
MspR9I CCNGG 4 cut(s) 294, 468, 1016, 1383
MunI CAATTG 3 cut(s) 15, 97, 1449
Mva1269I GAATGC 2 cut(s) 277, 532
MvaI CCWGG 3 cut(s) 294, 468, 1383
MwoI GCNNNNNNNGC 9 cut(s) 143, 228, 311, 949, 1214, 1521, 1661, 1667, 1670
NaeI GCCGGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 1 cut(s) 1016
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 1459
NdeII GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 3 cut(s) 322, 701, 1645
NlaIV GGNNCC 5 cut(s) 9, 187, 574, 808, 1698
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 4 cut(s) 166, 659, 1031, 1579
NsiI ATGCAT 1 cut(s) 1657
NspI RCATGY 1 cut(s) 701
PaeI GCATGC 1 cut(s) 701
PagI TCATGA 1 cut(s) 1641
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PctI GAATGC 2 cut(s) 277, 532
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 3 cut(s) 158, 422, 1749
PfoI TCCNGGA 1 cut(s) 1014
PinAI ACCGGT 1 cut(s) 1007
PleI GAGTC 3 cut(s) 163, 482, 542
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 3 cut(s) 163, 482, 542
Psp6I CCWGG 3 cut(s) 292, 466, 1381
PspGI CCWGG 3 cut(s) 292, 466, 1381
PspN4I GGNNCC 5 cut(s) 9, 187, 574, 808, 1698
PspPI GGNCC 1 cut(s) 1385
PstI CTGCAG 1 cut(s) 1222
PstNI CAGNNNCTG 1 cut(s) 1752
PsuI RGATCY 3 cut(s) 865, 1188, 1552
RsaI GTAC 1 cut(s) 1420
RsaNI GTAC 1 cut(s) 1419
RseI CAYNNNNRTG 2 cut(s) 323, 1589
SaqAI TTAA 4 cut(s) 554, 1088, 1232, 1335
Sau3AI GATC 6 cut(s) 47, 376, 865, 1188, 1315, 1552
Sau96I GGNCC 1 cut(s) 1385
SchI GAGTC 3 cut(s) 163, 482, 542
ScrFI CCNGG 4 cut(s) 294, 468, 1016, 1383
SduI GDGCHC 1 cut(s) 1722
SfaNI GCATC 6 cut(s) 97, 683, 1111, 1195, 1564, 1664
SfcI CTRYAG 2 cut(s) 1046, 1218
SfoI GGCGCC 1 cut(s) 9
SinI GGWCC 1 cut(s) 1385
SmiMI CAYNNNNRTG 2 cut(s) 323, 1589
SphI GCATGC 1 cut(s) 701
Sse9I AATT 8 cut(s) 15, 97, 555, 664, 707, 1449, 1500, 1701
SspDI GGCGCC 1 cut(s) 7
SspI AATATT 3 cut(s) 1003, 1166, 1229
SspMI CTAG 4 cut(s) 117, 389, 1143, 1556
StyD4I CCNGG 4 cut(s) 292, 466, 1014, 1381
StyI CCWWGG 3 cut(s) 258, 318, 777
TaaI ACNGT 5 cut(s) 130, 185, 963, 1093, 1423
TaiI ACGT 2 cut(s) 585, 900
TaqI TCGA 1 cut(s) 505
TasI AATT 8 cut(s) 15, 97, 555, 664, 707, 1449, 1500, 1701
TatI WGTACW 1 cut(s) 1418
TauI GCSGC 6 cut(s) 13, 84, 105, 108, 225, 317
TfiI GAWTC 3 cut(s) 158, 422, 1749
Tru1I TTAA 4 cut(s) 554, 1088, 1232, 1335
Tru9I TTAA 4 cut(s) 554, 1088, 1232, 1335
TscAI CASTG 4 cut(s) 168, 433, 799, 1421
TseFI GTSAC 4 cut(s) 166, 659, 1031, 1579
TseI GCWGC 7 cut(s) 37, 146, 311, 1217, 1260, 1661, 1670
Tsp45I GTSAC 4 cut(s) 166, 659, 1031, 1579
TspDTI ATGAA 5 cut(s) 630, 658, 1630, 1658, 1694
TspGWI ACGGA 2 cut(s) 122, 1302
TspRI CASTG 4 cut(s) 168, 433, 799, 1421
VpaK11BI GGWCC 1 cut(s) 1385
XapI RAATTY 1 cut(s) 1500
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XspI CTAG 4 cut(s) 117, 389, 1143, 1556
Zsp2I ATGCAT 1 cut(s) 1657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.