Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 269 |
| AciI | CCGC | 2 cut(s) | 8, 267 |
| AclWI | GGATC | 1 cut(s) | 303 |
| AcsI | RAATTY | 2 cut(s) | 183, 683 |
| AcuI | CTGAAG | 2 cut(s) | 364, 643 |
| AfaI | GTAC | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 163, 272 |
| AgsI | TTSAA | 4 cut(s) | 161, 310, 401, 417 |
| AjiI | CACGTC | 1 cut(s) | 349 |
| AjnI | CCWGG | 1 cut(s) | 432 |
| AluBI | AGCT | 6 cut(s) | 31, 79, 121, 412, 549, 558 |
| AluI | AGCT | 6 cut(s) | 31, 79, 121, 412, 549, 558 |
| Alw21I | GWGCWC | 1 cut(s) | 123 |
| AlwI | GGATC | 1 cut(s) | 303 |
| AoxI | GGCC | 2 cut(s) | 225, 638 |
| ApoI | RAATTY | 2 cut(s) | 183, 683 |
| AspLEI | GCGC | 1 cut(s) | 271 |
| AspS9I | GGNCC | 3 cut(s) | 109, 154, 639 |
| AsuHPI | GGTGA | 3 cut(s) | 287, 578, 788 |
| AvaII | GGWCC | 2 cut(s) | 109, 154 |
| BanII | GRGCYC | 1 cut(s) | 123 |
| BbsI | GAAGAC | 1 cut(s) | 408 |
| Bbv12I | GWGCWC | 1 cut(s) | 123 |
| BccI | CCATC | 3 cut(s) | 98, 767, 782 |
| BciT130I | CCWGG | 1 cut(s) | 434 |
| BclI | TGATCA | 1 cut(s) | 751 |
| Bme1390I | CCNGG | 1 cut(s) | 434 |
| Bme18I | GGWCC | 2 cut(s) | 109, 154 |
| BmgBI | CACGTC | 1 cut(s) | 349 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 154, 639 |
| BmrFI | CCNGG | 1 cut(s) | 434 |
| BmsI | GCATC | 2 cut(s) | 322, 658 |
| BpiI | GAAGAC | 1 cut(s) | 408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 294 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 158, 188, 620, 650 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 163, 272 |
| Bse1I | ACTGG | 2 cut(s) | 144, 194 |
| Bse8I | GATNNNNATC | 1 cut(s) | 294 |
| BseBI | CCWGG | 1 cut(s) | 434 |
| BseGI | GGATG | 6 cut(s) | 262, 295, 442, 598, 754, 790 |
| BseJI | GATNNNNATC | 1 cut(s) | 294 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 163, 272 |
| BseMII | CTCAG | 1 cut(s) | 531 |
| BseNI | ACTGG | 2 cut(s) | 144, 194 |
| Bsh1236I | CGCG | 1 cut(s) | 269 |
| BshFI | GGCC | 2 cut(s) | 227, 640 |
| BsiHKAI | GWGCWC | 1 cut(s) | 123 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 163, 272 |
| BsnI | GGCC | 2 cut(s) | 227, 640 |
| Bsp1286I | GDGCHC | 1 cut(s) | 123 |
| Bsp143I | GATC | 3 cut(s) | 129, 295, 751 |
| BspACI | CCGC | 2 cut(s) | 8, 267 |
| BspANI | GGCC | 2 cut(s) | 227, 640 |
| BspCNI | CTCAG | 1 cut(s) | 532 |
| BspFNI | CGCG | 1 cut(s) | 269 |
| BspHI | TCATGA | 2 cut(s) | 508, 601 |
| BspPI | GGATC | 1 cut(s) | 303 |
| BsrI | ACTGG | 2 cut(s) | 144, 194 |
| BssMI | GATC | 3 cut(s) | 129, 295, 751 |
| Bst2UI | CCWGG | 1 cut(s) | 434 |
| Bst6I | CTCTTC | 2 cut(s) | 380, 702 |
| BstC8I | GCNNGC | 1 cut(s) | 191 |
| BstDEI | CTNAG | 1 cut(s) | 540 |
| BstF5I | GGATG | 6 cut(s) | 262, 295, 442, 598, 754, 790 |
| BstFNI | CGCG | 1 cut(s) | 269 |
| BstHHI | GCGC | 1 cut(s) | 271 |
| BstKTI | GATC | 3 cut(s) | 132, 298, 754 |
| BstMBI | GATC | 3 cut(s) | 129, 295, 751 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 555 |
| BstNI | CCWGG | 1 cut(s) | 434 |
| BstSCI | CCNGG | 1 cut(s) | 432 |
| BstUI | CGCG | 1 cut(s) | 269 |
| BstV2I | GAAGAC | 1 cut(s) | 408 |
| BsuRI | GGCC | 2 cut(s) | 227, 640 |
| BtrI | CACGTC | 1 cut(s) | 349 |
| BtsCI | GGATG | 6 cut(s) | 262, 295, 442, 598, 754, 790 |
| BtsIMutI | CAGTG | 1 cut(s) | 151 |
| Cac8I | GCNNGC | 1 cut(s) | 191 |
| CciI | TCATGA | 2 cut(s) | 508, 601 |
| CfoI | GCGC | 1 cut(s) | 271 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 154, 639 |
| Csp6I | GTAC | 1 cut(s) | 175 |
| CviAII | CATG | 3 cut(s) | 509, 602, 665 |
| CviQI | GTAC | 1 cut(s) | 175 |
| DdeI | CTNAG | 1 cut(s) | 540 |
| DpnI | GATC | 3 cut(s) | 131, 297, 753 |
| DpnII | GATC | 3 cut(s) | 129, 295, 751 |
| Eam1104I | CTCTTC | 2 cut(s) | 380, 702 |
| EarI | CTCTTC | 2 cut(s) | 380, 702 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Ecl136II | GAGCTC | 1 cut(s) | 121 |
| Eco24I | GRGCYC | 1 cut(s) | 123 |
| Eco32I | GATATC | 1 cut(s) | 217 |
| Eco47I | GGWCC | 2 cut(s) | 109, 154 |
| Eco53kI | GAGCTC | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 2 cut(s) | 364, 643 |
| EcoICRI | GAGCTC | 1 cut(s) | 121 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 432 |
| EcoRV | GATATC | 1 cut(s) | 217 |
| EcoT38I | GRGCYC | 1 cut(s) | 123 |
| FaeI | CATG | 3 cut(s) | 512, 605, 668 |
| FaiI | YATR | 7 cut(s) | 257, 363, 491, 510, 590, 603, 666 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 617, 649 |
| FatI | CATG | 3 cut(s) | 508, 601, 664 |
| FauI | CCCGC | 1 cut(s) | 274 |
| FbaI | TGATCA | 1 cut(s) | 751 |
| FokI | GGATG | 5 cut(s) | 249, 302, 449, 605, 761 |
| FriOI | GRGCYC | 1 cut(s) | 123 |
| GlaI | GCGC | 1 cut(s) | 270 |
| HaeIII | GGCC | 2 cut(s) | 227, 640 |
| HhaI | GCGC | 1 cut(s) | 271 |
| Hin1II | CATG | 3 cut(s) | 512, 605, 668 |
| Hin6I | GCGC | 1 cut(s) | 269 |
| HinP1I | GCGC | 1 cut(s) | 269 |
| HincII | GTYRAC | 1 cut(s) | 246 |
| HindII | GTYRAC | 1 cut(s) | 246 |
| HindIII | AAGCTT | 3 cut(s) | 29, 410, 547 |
| HinfI | GANTC | 3 cut(s) | 259, 598, 731 |
| HpaI | GTTAAC | 1 cut(s) | 246 |
| HphI | GGTGA | 3 cut(s) | 287, 578, 788 |
| Hpy166II | GTNNAC | 3 cut(s) | 199, 246, 278 |
| Hpy188I | TCNGA | 3 cut(s) | 37, 541, 736 |
| Hpy188III | TCNNGA | 7 cut(s) | 94, 233, 326, 509, 575, 602, 755 |
| Hpy8I | GTNNAC | 3 cut(s) | 199, 246, 278 |
| Hpy99I | CGWCG | 1 cut(s) | 74 |
| HpyAV | CCTTC | 3 cut(s) | 434, 439, 473 |
| HpyCH4IV | ACGT | 1 cut(s) | 348 |
| HpyCH4V | TGCA | 3 cut(s) | 103, 342, 614 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 555 |
| HpyF3I | CTNAG | 1 cut(s) | 540 |
| HpySE526I | ACGT | 1 cut(s) | 348 |
| Hsp92II | CATG | 3 cut(s) | 512, 605, 668 |
| HspAI | GCGC | 1 cut(s) | 269 |
| Ksp22I | TGATCA | 1 cut(s) | 751 |
| KspAI | GTTAAC | 1 cut(s) | 246 |
| Kzo9I | GATC | 3 cut(s) | 129, 295, 751 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LweI | GCATC | 2 cut(s) | 322, 658 |
| MaeII | ACGT | 1 cut(s) | 348 |
| MaeIII | GTNAC | 1 cut(s) | 451 |
| MalI | GATC | 3 cut(s) | 131, 297, 753 |
| MboI | GATC | 3 cut(s) | 129, 295, 751 |
| MboII | GAAGA | 8 cut(s) | 59, 367, 370, 413, 526, 719, 749, 782 |
| MhlI | GDGCHC | 1 cut(s) | 123 |
| MluCI | AATT | 2 cut(s) | 183, 683 |
| MlyI | GAGTC | 2 cut(s) | 268, 725 |
| MseI | TTAA | 2 cut(s) | 245, 624 |
| MspR9I | CCNGG | 1 cut(s) | 434 |
| MvaI | CCWGG | 1 cut(s) | 434 |
| MvnI | CGCG | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 555 |
| NdeII | GATC | 3 cut(s) | 129, 295, 751 |
| NlaIII | CATG | 3 cut(s) | 512, 605, 668 |
| PagI | TCATGA | 2 cut(s) | 508, 601 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PfeI | GAWTC | 1 cut(s) | 598 |
| PfoI | TCCNGGA | 1 cut(s) | 432 |
| PleI | GAGTC | 2 cut(s) | 267, 725 |
| PpsI | GAGTC | 2 cut(s) | 267, 725 |
| PpuMI | RGGWCCY | 1 cut(s) | 154 |
| Psp124BI | GAGCTC | 1 cut(s) | 123 |
| Psp5II | RGGWCCY | 1 cut(s) | 154 |
| Psp6I | CCWGG | 1 cut(s) | 432 |
| PspGI | CCWGG | 1 cut(s) | 432 |
| PspPI | GGNCC | 3 cut(s) | 109, 154, 639 |
| PspPPI | RGGWCCY | 1 cut(s) | 154 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 436, 468 |
| RsaI | GTAC | 1 cut(s) | 176 |
| RsaNI | GTAC | 1 cut(s) | 175 |
| SacI | GAGCTC | 1 cut(s) | 123 |
| SaqAI | TTAA | 2 cut(s) | 245, 624 |
| Sau3AI | GATC | 3 cut(s) | 129, 295, 751 |
| Sau96I | GGNCC | 3 cut(s) | 109, 154, 639 |
| SchI | GAGTC | 2 cut(s) | 268, 725 |
| ScrFI | CCNGG | 1 cut(s) | 434 |
| SduI | GDGCHC | 1 cut(s) | 123 |
| SfaNI | GCATC | 2 cut(s) | 322, 658 |
| SinI | GGWCC | 2 cut(s) | 109, 154 |
| Sse9I | AATT | 2 cut(s) | 183, 683 |
| SsiI | CCGC | 2 cut(s) | 8, 267 |
| SstI | GAGCTC | 1 cut(s) | 123 |
| StyD4I | CCNGG | 1 cut(s) | 432 |
| TaiI | ACGT | 1 cut(s) | 351 |
| TaqI | TCGA | 3 cut(s) | 69, 93, 123 |
| TasI | AATT | 2 cut(s) | 183, 683 |
| TatI | WGTACW | 1 cut(s) | 174 |
| TfiI | GAWTC | 1 cut(s) | 598 |
| Tru1I | TTAA | 2 cut(s) | 245, 624 |
| Tru9I | TTAA | 2 cut(s) | 245, 624 |
| TscAI | CASTG | 1 cut(s) | 151 |
| TspDTI | ATGAA | 6 cut(s) | 66, 195, 453, 590, 720, 783 |
| TspGWI | ACGGA | 1 cut(s) | 302 |
| TspRI | CASTG | 1 cut(s) | 151 |
| VpaK11BI | GGWCC | 2 cut(s) | 109, 154 |
| XapI | RAATTY | 2 cut(s) | 183, 683 |