AT2G46460

Contains the following InterPro domains Polynucleotidyl transferase, ribonuclease H fold (InterPro IPR012337)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000204
Physical Location & Seq
Forward (+)
19071537 .. 19072019
483 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46460.1

Sequence Viewer

Length: 483 bp
ATGGGTTGGACAAGACCACCCCACGGCTGGAAGAAGTGTAACTATGATGGATCGTACAATCGGGAGATGCCAAGTAAGGCTGGATGGATAATTCGAGATGAGTCGGGCCAATTTGTAAGTGCAGGTCAAGCGACAGGGAACCACACTTCTAATGCTCTAGAAAGCGAGTTTCAAGCTCTTCTTATCACAATGCAAAGCTGTTGGAGCCACGGTCATAGAAAAATCTGGTTTGAAGGAGATAACAGGGAGGTGATGGAAATCCTCAATAGGAGAAAATCACGTTTTGATATCTTTAATTGGATAAGAGATGTTCAAGCTTGGAAGCAACGATTTCAGGAATGCAGATTCACATGGATCAACCGAAAACAGAACAAACCGGCGGATATTCTTGCCAAGAGTCACTTACCCCAGAATGAACAATTTAAATTTTATGATTACATTCCGATTGTAATTTCTTCAGCCTTACAGCTGGAAAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

160

Amino Acids

18.96

Weight (kDa)

9.24

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 14 - 133 2e-37 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 113
AciI CCGC 1 cut(s) 380
AclWI GGATC 2 cut(s) 58, 362
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 23, 27
AgsI TTSAA 3 cut(s) 173, 233, 314
AluBI AGCT 4 cut(s) 176, 198, 317, 469
AluI AGCT 4 cut(s) 176, 198, 317, 469
AlwI GGATC 2 cut(s) 58, 362
AoxI GGCC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 262
BccI CCATC 3 cut(s) 41, 78, 247
BceAI ACGGC 1 cut(s) 40
BfaI CTAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 140, 206
BmsI GCATC 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 22, 208
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 27
Bse118I RCCGGY 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 22, 208
BseGI GGATG 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 23, 27
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 23, 27
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 50, 354
BspACI CCGC 1 cut(s) 380
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 140, 206
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 2 cut(s) 58, 362
BspQI GCTCTTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 22, 208
BssMI GATC 2 cut(s) 50, 354
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 183
BstDSI CCRYGG 2 cut(s) 22, 208
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 53, 357
BstMBI GATC 2 cut(s) 50, 354
BstMWI GCNNNNNNNGC 2 cut(s) 128, 204
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 22, 208
BtsCI GGATG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 351
CviJI RGCY 9 cut(s) 27, 80, 108, 176, 198, 207, 317, 461, 469
CviKI_1 RGCY 9 cut(s) 27, 80, 108, 176, 198, 207, 317, 461, 469
CviQI GTAC 1 cut(s) 55
DpnI GATC 2 cut(s) 52, 356
DpnII GATC 2 cut(s) 50, 354
DraI TTTAAA 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EciI GGCGGA 1 cut(s) 395
Eco32I GATATC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 289
FaeI CATG 1 cut(s) 354
FaiI YATR 4 cut(s) 45, 216, 352, 432
FalI AAGNNNNNCTT 4 cut(s) 165, 197, 386, 418
FatI CATG 1 cut(s) 350
FokI GGATG 1 cut(s) 96
FspBI CTAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 377
Hin1II CATG 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 3 cut(s) 101, 345, 397
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 444
Hpy188III TCNNGA 5 cut(s) 62, 95, 158, 335, 480
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 122, 193, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 204
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 1 cut(s) 354
Kzo9I GATC 2 cut(s) 50, 354
LguI GCTCTTC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 204
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 38, 398
MalI GATC 2 cut(s) 52, 356
MboI GATC 2 cut(s) 50, 354
MboII GAAGA 3 cut(s) 43, 170, 447
MluCI AATT 6 cut(s) 90, 110, 295, 419, 425, 450
MlyI GAGTC 2 cut(s) 110, 406
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 2 cut(s) 241, 272
MseI TTAA 2 cut(s) 294, 423
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 128, 204
NdeII GATC 2 cut(s) 50, 354
NlaIII CATG 1 cut(s) 354
NlaIV GGNNCC 2 cut(s) 140, 206
NmuCI GTSAC 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 183
PctI GAATGC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 345
PleI GAGTC 2 cut(s) 109, 405
PpsI GAGTC 2 cut(s) 109, 405
PspN4I GGNNCC 2 cut(s) 140, 206
PspPI GGNCC 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 294, 423
Sau3AI GATC 2 cut(s) 50, 354
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 2 cut(s) 110, 406
SetI ASST 7 cut(s) 127, 178, 200, 252, 283, 319, 471
SfaNI GCATC 1 cut(s) 57
SmiI ATTTAAAT 1 cut(s) 424
Sse9I AATT 6 cut(s) 90, 110, 295, 419, 425, 450
SsiI CCGC 1 cut(s) 380
SspMI CTAG 1 cut(s) 158
SwaI ATTTAAAT 1 cut(s) 424
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 94
TasI AATT 6 cut(s) 90, 110, 295, 419, 425, 450
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 2 cut(s) 294, 423
Tru9I TTAA 2 cut(s) 294, 423
TseFI GTSAC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 429
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.