Rmu_sc0001981.1_g000015

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001981.1
OG0000204
Physical Location & Seq
Reverse (-)
55584 .. 55886
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001981.1_g000015.1.cds

Sequence Viewer

Length: 303 bp
atggctctatgttttcttcttctcaggcagctggtggctttgtctttcgggatactgaaggaccctgtcctagcagcttgtaatcgtctgcctaaggtggatatttcattggcggaaggtctggctcttaaagctggattgcatgcagctttgctccatggcttttcttctctggatattgaaggtgattctaaacttttgctcgatgccttggctggtaatgtccaagttccacggcacttcaaaccagttattcatgatattaagcggctggcccgacagctccaaatcaactcgttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.86

Weight (kDa)

9.18

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 113, 268
AcuI CTGAAG 1 cut(s) 77
AgsI TTSAA 2 cut(s) 182, 244
AluBI AGCT 5 cut(s) 31, 77, 134, 149, 283
AluI AGCT 5 cut(s) 31, 77, 134, 149, 283
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 28, 74, 146
AspS9I GGNCC 2 cut(s) 61, 274
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 93
BbvI GCAGC 3 cut(s) 40, 86, 158
BceAI ACGGC 1 cut(s) 251
BciVI GTATCC 1 cut(s) 45
BfaI CTAG 1 cut(s) 71
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 4 cut(s) 29, 75, 147, 269
BlsI GCNGC 4 cut(s) 30, 76, 148, 270
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 61, 274
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 157, 210, 233
Bse1I ACTGG 1 cut(s) 248
Bse21I CCTNAGG 1 cut(s) 93
BseDI CCNNGG 3 cut(s) 157, 210, 233
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 3 cut(s) 40, 86, 158
BshFI GGCC 1 cut(s) 275
BsnI GGCC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 2 cut(s) 113, 268
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 157, 210, 233
BssT1I CCWWGG 2 cut(s) 157, 210
BstC8I GCNNGC 2 cut(s) 144, 273
BstDEI CTNAG 2 cut(s) 23, 93
BstDSI CCRYGG 2 cut(s) 157, 233
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 40, 86, 158
Bsu36I CCTNAGG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 2 cut(s) 157, 233
Cac8I GCNNGC 2 cut(s) 144, 273
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 61, 274
CviAII CATG 3 cut(s) 143, 158, 257
DdeI CTNAG 2 cut(s) 23, 93
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 157, 210
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 157, 210
ErhI CCWWGG 2 cut(s) 157, 210
FaeI CATG 3 cut(s) 146, 161, 260
FaiI YATR 4 cut(s) 10, 144, 159, 258
FatI CATG 3 cut(s) 142, 157, 256
Fnu4HI GCNGC 4 cut(s) 29, 75, 147, 269
Fsp4HI GCNGC 4 cut(s) 29, 75, 147, 269
FspBI CTAG 1 cut(s) 71
GluI GCNGC 4 cut(s) 29, 75, 147, 269
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 3 cut(s) 146, 161, 260
HinfI GANTC 1 cut(s) 188
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 302
Hpy188III TCNNGA 3 cut(s) 49, 173, 257
HpyAV CCTTC 3 cut(s) 52, 110, 176
HpyCH4V TGCA 2 cut(s) 142, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 23, 93
Hsp92II CATG 3 cut(s) 146, 161, 260
LmnI GCTCC 2 cut(s) 159, 288
LpnPI CCDG 9 cut(s) 10, 17, 78, 107, 120, 158, 201, 257, 261
Lsp1109I GCAGC 3 cut(s) 40, 86, 158
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 71
MboII GAAGA 3 cut(s) 8, 11, 159
MseI TTAA 2 cut(s) 129, 264
MspA1I CMGCKG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 157
NlaIII CATG 3 cut(s) 146, 161, 260
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 1 cut(s) 146
PaeI GCATGC 1 cut(s) 146
PagI TCATGA 1 cut(s) 256
PfeI GAWTC 1 cut(s) 188
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 4 cut(s) 30, 76, 148, 270
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 61, 274
PspPPI RGGWCCY 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 31
SaqAI TTAA 2 cut(s) 129, 264
SatI GCNGC 4 cut(s) 29, 75, 147, 269
Sau96I GGNCC 2 cut(s) 61, 274
SetI ASST 8 cut(s) 33, 79, 99, 121, 136, 151, 187, 285
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 61
SphI GCATGC 1 cut(s) 146
SsiI CCGC 2 cut(s) 113, 268
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 2 cut(s) 157, 210
TaqI TCGA 1 cut(s) 204
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 129, 264
Tru9I TTAA 2 cut(s) 129, 264
TseI GCWGC 3 cut(s) 28, 74, 146
TspDTI ATGAA 2 cut(s) 96, 245
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 61
XceI RCATGY 1 cut(s) 146
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.