Prupe.8G128400_v2.0.a1

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000204
Physical Location & Seq
Forward (+)
15212142 .. 15214644
2503 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G128400.1

Sequence Viewer

Length: 714 bp
ATGCCCCCTATAGATCCAGATCATGATATCCCAATAAGAGTCTTAGATGATTGGGGTAGGCCTTATGTTTTCCATTTATCGTGCAGGCAAGGCAAGTACAAAAATCCAGTTTTCCAGTCAAGACATTGGAGTGCCTTTCTCAAGGAGAGAGGTGCTAAAGCTGGGGATTTCATCTATTTCTGGCCTCAGGAAAATGCATTTTATCAAACACAATACAGGATTAAGCTGCTCAGAAGAATTTGGCTGCTACTGGACTGGGTTAAAGTGAATTTTGATGGTTCGGTGCGTAGTAATTTGGCTACTACTGGTTTTGTGATTTGTGACTGGAATGGTAATGTTCGTTTAGCTGACACTAAAAACTCTGGTCAAGTTTCTTTTACAGTCGCAGAGTGTTTGGCCCTTCGGGATGGGCTGGCTCATGCTATTCATAAGGGTTGGCAAAAGATCCTTATGGAAGGTGACTCAAAACTCATCATTGATTGTGTTAACAATCTAGTTTCAGTTCCCTGGAGCATAAGTCTCCTTGTGCAAGACATTCGGTTGCTCAATTCTTATTGCGAAGAGATTTCGTTTCAGCACATTTTTCGGGAAGCTAACTTTACTGCTGATGATGTTGCTACTTTAGGCCATAGTCTTACTCCGTCTCGGCTGTGGAATAGGGGACTTCCATTAAGTCAATTAAACAACAGCTTTAGGACATTGCATGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

238

Amino Acids

27.35

Weight (kDa)

8.28

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 8, 439
AcsI RAATTY 2 cut(s) 237, 268
AfaI GTAC 1 cut(s) 98
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 5 cut(s) 161, 226, 347, 593, 690
AluI AGCT 5 cut(s) 161, 226, 347, 593, 690
Alw26I GTCTC 2 cut(s) 524, 648
AlwI GGATC 2 cut(s) 8, 439
AoxI GGCC 4 cut(s) 59, 182, 396, 625
ApeKI GCWGC 2 cut(s) 226, 244
ApoI RAATTY 2 cut(s) 237, 268
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 470
AxyI CCTNAGG 1 cut(s) 186
BbvI GCAGC 2 cut(s) 213, 231
BccI CCATC 2 cut(s) 269, 401
BcgI CGANNNNNNTGC 4 cut(s) 518, 552, 566, 600
BciT130I CCWGG 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 524, 648
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 227, 245
BlsI GCNGC 2 cut(s) 228, 246
Bme1390I CCNGG 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 508
BmrI ACTGGG 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 506
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bse1I ACTGG 6 cut(s) 107, 115, 255, 260, 310, 329
Bse21I CCTNAGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 698
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 1 cut(s) 412
BseJI GATNNNNATC 1 cut(s) 18
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 200, 244
BseNI ACTGG 6 cut(s) 107, 115, 255, 260, 310, 329
BseXI GCAGC 2 cut(s) 213, 231
BseYI CCCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 4 cut(s) 61, 184, 398, 627
BslFI GGGAC 1 cut(s) 675
BsmAI GTCTC 2 cut(s) 524, 648
BsmBI CGTCTC 1 cut(s) 648
BsmFI GGGAC 1 cut(s) 675
BsnI GGCC 4 cut(s) 61, 184, 398, 627
Bsp143I GATC 3 cut(s) 13, 19, 444
BspANI GGCC 4 cut(s) 61, 184, 398, 627
BspCNI CTCAG 2 cut(s) 199, 243
BspHI TCATGA 1 cut(s) 22
BspPI GGATC 2 cut(s) 8, 439
BsrDI GCAATG 1 cut(s) 698
BsrI ACTGG 6 cut(s) 107, 115, 255, 260, 310, 329
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 3 cut(s) 13, 19, 444
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 555
BstC8I GCNNGC 2 cut(s) 86, 414
BstDEI CTNAG 3 cut(s) 43, 186, 230
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 3 cut(s) 16, 22, 447
BstMAI GTCTC 2 cut(s) 524, 648
BstMBI GATC 3 cut(s) 13, 19, 444
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 213, 231
BstX2I RGATCY 2 cut(s) 13, 444
BstYI RGATCY 2 cut(s) 13, 444
Bsu36I CCTNAGG 1 cut(s) 186
BsuRI GGCC 4 cut(s) 61, 184, 398, 627
BtsCI GGATG 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 86, 414
CciI TCATGA 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 97
CviAII CATG 3 cut(s) 23, 419, 704
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 3 cut(s) 43, 186, 230
DpnI GATC 3 cut(s) 15, 21, 446
DpnII GATC 3 cut(s) 13, 19, 444
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco147I AGGCCT 1 cut(s) 61
Eco32I GATATC 1 cut(s) 28
Eco81I CCTNAGG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 506
EcoRV GATATC 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 648
FaeI CATG 3 cut(s) 26, 422, 707
FaqI GGGAC 1 cut(s) 675
FatI CATG 3 cut(s) 22, 418, 703
Fnu4HI GCNGC 2 cut(s) 227, 245
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 2 cut(s) 227, 245
FspBI CTAG 1 cut(s) 494
GluI GCNGC 2 cut(s) 227, 245
GsaI CCCAGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 4 cut(s) 61, 184, 398, 627
Hin1II CATG 3 cut(s) 26, 422, 707
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 3 cut(s) 39, 461, 707
HpaI GTTAAC 1 cut(s) 487
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 6 cut(s) 17, 23, 120, 188, 404, 587
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 410, 449
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 4 cut(s) 84, 197, 529, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 3 cut(s) 43, 186, 230
Hsp92II CATG 3 cut(s) 26, 422, 707
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 3 cut(s) 13, 19, 444
LmnI GCTCC 1 cut(s) 510
Lsp1109I GCAGC 2 cut(s) 213, 231
MaeI CTAG 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 320, 458
MalI GATC 3 cut(s) 15, 21, 446
MboI GATC 3 cut(s) 13, 19, 444
MboII GAAGA 2 cut(s) 246, 572
MflI RGATCY 2 cut(s) 13, 444
MluCI AATT 5 cut(s) 237, 268, 292, 547, 677
MlyI GAGTC 2 cut(s) 48, 455
MnlI CCTC 2 cut(s) 143, 195
Mph1103I ATGCAT 1 cut(s) 199
MseI TTAA 5 cut(s) 222, 261, 486, 671, 680
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 3 cut(s) 13, 19, 444
NlaIII CATG 3 cut(s) 26, 422, 707
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 2 cut(s) 320, 458
NsiI ATGCAT 1 cut(s) 199
PagI TCATGA 1 cut(s) 22
PceI AGGCCT 1 cut(s) 61
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 2 cut(s) 228, 246
PleI GAGTC 2 cut(s) 47, 455
PpsI GAGTC 2 cut(s) 47, 455
Psp6I CCWGG 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 506
PspPI GGNCC 1 cut(s) 397
PsuI RGATCY 2 cut(s) 13, 444
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 5 cut(s) 222, 261, 486, 671, 680
SatI GCNGC 2 cut(s) 227, 245
Sau3AI GATC 3 cut(s) 13, 19, 444
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 2 cut(s) 48, 455
ScrFI CCNGG 1 cut(s) 508
SetI ASST 7 cut(s) 154, 163, 228, 349, 460, 595, 692
SfcI CTRYAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 5 cut(s) 237, 268, 292, 547, 677
SseBI AGGCCT 1 cut(s) 61
SspMI CTAG 1 cut(s) 494
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 506
TaaI ACNGT 1 cut(s) 382
TasI AATT 5 cut(s) 237, 268, 292, 547, 677
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 5 cut(s) 222, 261, 486, 671, 680
Tru9I TTAA 5 cut(s) 222, 261, 486, 671, 680
TseFI GTSAC 2 cut(s) 320, 458
TseI GCWGC 2 cut(s) 226, 244
Tsp45I GTSAC 2 cut(s) 320, 458
TspDTI ATGAA 2 cut(s) 160, 416
TspGWI ACGGA 1 cut(s) 630
XapI RAATTY 2 cut(s) 237, 268
XspI CTAG 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.