Rorug06G0440700

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000204
Physical Location & Seq
Forward (+)
57355696 .. 57359089
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0440700.1

Sequence Viewer

Length: 1002 bp
ATGTATTCCTTGACGGTGAAGCCCTCTTTTCTTCTTGTACCAAAATCATCATCTTCTTCATCTGCTTATTCTTGGGTTGGGTCTTCTTCTTCTACGGTTAGTTTCCCAATAAAGACCAAAAGCAGGGGCAGCAGAATCAGTTTGAGAATTGCGGCTTACGATTCTTCCAAGAACAACGATGGGCTCAACTCCGGTGATTCCAAACCTCCCAACGGCACTGTGCCAAAGAGCAGGAGGGATATACTTTTGGAGTATGTAAAAAATGTGCAGCCTGAATTTATGGAGCTGTTTGTAAAGAGAGCACCCCAGCAGGTGGTTGATGCAATGCGCCAAACTGTGACAAATATGATTGGAACACTACCCCCACAATTTTTTACAGTCACAGTGTCCACAGTTGCCGAAAATCTTGCACAACTTATGTACAGTATCATGATGACTGGATATATGTTTCAAAATGCACAGTACAGGTTGGAACTGCAGCAAAGTTTAGAGCCAGTTGCTCTTCCTGAAGGGCAAGAGAAAAAGGATGCACCAGAGTATGCACCTGGTACACAGAAGACGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGCTTCAGATCCTAGCCAAATGAAGGCTAGTGTAACATCAACAACTGCACCAGAACTTGCAAAGCTGCTTTATTGGCTAATGGTAGTCGGATATAGTCTTCGCAACATTGAAGTTCGTTTTGATATGGAACGAGTACTTGGGAATCCTCCAAAGCTCGCAGAATTGCCTCCAGGTGAAAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

333

Amino Acids

36.89

Weight (kDa)

5.6

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 82 - 163 6.4e-25 Protein of unknown function (DUF760)
DUF760 PF05542 235 - 318 3.5e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 301
AasI GACNNNNNNGTC 1 cut(s) 565
Acc36I ACCTGC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 313
AciI CCGC 2 cut(s) 152, 805
AclWI GGATC 1 cut(s) 818
AcsI RAATTY 2 cut(s) 275, 739
AcuI CTGAAG 2 cut(s) 528, 804
AfaI GTAC 7 cut(s) 39, 422, 464, 550, 629, 760, 951
AfiI CCNNNNNNNGG 4 cut(s) 123, 212, 313, 838
AgsI TTSAA 4 cut(s) 452, 644, 664, 926
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 2 cut(s) 544, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 936, 968
AluBI AGCT 3 cut(s) 286, 880, 970
AluI AGCT 3 cut(s) 286, 880, 970
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 729, 762
AlwI GGATC 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 5 cut(s) 129, 268, 478, 815, 880
ApoI RAATTY 2 cut(s) 275, 739
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 3 cut(s) 28, 206, 1001
AvaI CYCGRG 1 cut(s) 728
BanII GRGCYC 2 cut(s) 186, 735
BbsI GAAGAC 3 cut(s) 75, 563, 905
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 5 cut(s) 141, 280, 490, 802, 867
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 546, 987
BciVI GTATCC 1 cut(s) 784
BcoDI GTCTC 2 cut(s) 729, 762
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 3 cut(s) 756, 828, 843
BfmI CTRYAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 301
BfuI GTATCC 1 cut(s) 784
BisI GCNGC 7 cut(s) 130, 153, 269, 479, 806, 816, 881
BlsI GCNGC 7 cut(s) 131, 154, 270, 480, 807, 817, 882
BmcAI AGTACT 2 cut(s) 760, 951
Bme1390I CCNGG 2 cut(s) 546, 987
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 1 cut(s) 602
BmrFI CCNGG 2 cut(s) 546, 987
BmsI GCATC 3 cut(s) 310, 517, 607
BpiI GAAGAC 3 cut(s) 75, 563, 905
BpmI CTGGAG 2 cut(s) 786, 969
BpuEI CTTGAG 1 cut(s) 704
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 212, 313, 838
Bse1I ACTGG 2 cut(s) 442, 494
Bse3DI GCAATG 2 cut(s) 330, 792
BseBI CCWGG 2 cut(s) 546, 987
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 4 cut(s) 123, 212, 313, 838
BseMI GCAATG 2 cut(s) 330, 792
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 442, 494
BseXI GCAGC 5 cut(s) 141, 280, 490, 802, 867
BseYI CCCAGC 1 cut(s) 306
BsgI GTGCAG 2 cut(s) 287, 846
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 4 cut(s) 123, 212, 313, 838
BsmAI GTCTC 2 cut(s) 729, 762
BsmBI CGTCTC 1 cut(s) 762
BsnI GGCC 1 cut(s) 603
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 3 cut(s) 186, 304, 735
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 1 cut(s) 823
BspACI CCGC 2 cut(s) 152, 805
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 1 cut(s) 598
BspHI TCATGA 1 cut(s) 429
BspMAI CTGCAG 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 818
BspQI GCTCTTC 1 cut(s) 507
BsrDI GCAATG 2 cut(s) 330, 792
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 2 cut(s) 442, 494
BssMI GATC 1 cut(s) 823
Bst2UI CCWGG 2 cut(s) 546, 987
Bst4CI ACNGT 9 cut(s) 16, 97, 220, 337, 379, 385, 394, 425, 462
Bst6I CTCTTC 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 972
BstDEI CTNAG 2 cut(s) 606, 621
BstF5I GGATG 1 cut(s) 532
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 1 cut(s) 826
BstMAI GTCTC 2 cut(s) 729, 762
BstMBI GATC 1 cut(s) 823
BstMWI GCNNNNNNNGC 2 cut(s) 129, 889
BstNI CCWGG 2 cut(s) 546, 987
BstSCI CCNGG 2 cut(s) 544, 985
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 5 cut(s) 141, 280, 490, 802, 867
BstV2I GAAGAC 3 cut(s) 75, 563, 905
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 2 cut(s) 216, 390
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 972
CciI TCATGA 1 cut(s) 429
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 602
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 7 cut(s) 38, 421, 463, 549, 628, 759, 950
CviAII CATG 1 cut(s) 430
CviQI GTAC 7 cut(s) 38, 421, 463, 549, 628, 759, 950
DdeI CTNAG 2 cut(s) 606, 621
DpnI GATC 1 cut(s) 825
DpnII GATC 1 cut(s) 823
DraI TTTAAA 1 cut(s) 744
DrdI GACNNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 565
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco24I GRGCYC 2 cut(s) 186, 735
Eco57I CTGAAG 2 cut(s) 528, 804
Eco88I CYCGRG 1 cut(s) 728
EcoRII CCWGG 2 cut(s) 544, 985
EcoT38I GRGCYC 2 cut(s) 186, 735
Esp3I CGTCTC 1 cut(s) 762
FaeI CATG 1 cut(s) 433
FatI CATG 1 cut(s) 429
Fnu4HI GCNGC 7 cut(s) 130, 153, 269, 479, 806, 816, 881
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 2 cut(s) 186, 735
Fsp4HI GCNGC 7 cut(s) 130, 153, 269, 479, 806, 816, 881
FspBI CTAG 3 cut(s) 756, 828, 843
GlaI GCGC 1 cut(s) 329
GluI GCNGC 7 cut(s) 130, 153, 269, 479, 806, 816, 881
GsaI CCCAGC 1 cut(s) 310
GsuI CTGGAG 2 cut(s) 786, 969
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 433
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 4 cut(s) 135, 161, 197, 958
HpaII CCGG 1 cut(s) 192
HphI GGTGA 3 cut(s) 28, 206, 1001
Hpy166II GTNNAC 3 cut(s) 390, 551, 753
Hpy188I TCNGA 2 cut(s) 823, 905
Hpy188III TCNNGA 3 cut(s) 430, 506, 728
Hpy8I GTNNAC 3 cut(s) 390, 551, 753
HpyAV CCTTC 2 cut(s) 503, 832
HpyCH4III ACNGT 9 cut(s) 16, 97, 220, 337, 379, 385, 394, 425, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 889
HpyF3I CTNAG 2 cut(s) 606, 621
Hsp92II CATG 1 cut(s) 433
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 823
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 5 cut(s) 141, 280, 490, 802, 867
LweI GCATC 3 cut(s) 310, 517, 607
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 3 cut(s) 756, 828, 843
MaeIII GTNAC 4 cut(s) 337, 379, 636, 847
MalI GATC 1 cut(s) 825
MboI GATC 1 cut(s) 823
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 3 cut(s) 186, 304, 735
MluCI AATT 7 cut(s) 147, 275, 368, 659, 704, 739, 977
MmeI TCCRAC 3 cut(s) 450, 690, 883
MnlI CCTC 6 cut(s) 34, 216, 228, 649, 972, 993
MseI TTAA 2 cut(s) 743, 1000
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 546, 987
MvaI CCWGG 2 cut(s) 546, 987
MwoI GCNNNNNNNGC 2 cut(s) 129, 889
NdeII GATC 1 cut(s) 823
NlaIII CATG 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 337, 379
PaeR7I CTCGAG 1 cut(s) 728
PagI TCATGA 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 507
PfeI GAWTC 4 cut(s) 135, 161, 197, 958
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 7 cut(s) 131, 154, 270, 480, 807, 817, 882
Psp6I CCWGG 2 cut(s) 544, 985
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 2 cut(s) 544, 985
PspPI GGNCC 1 cut(s) 602
PstI CTGCAG 1 cut(s) 480
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 7 cut(s) 39, 422, 464, 550, 629, 760, 951
RsaNI GTAC 7 cut(s) 38, 421, 463, 549, 628, 759, 950
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 2 cut(s) 743, 1000
SatI GCNGC 7 cut(s) 130, 153, 269, 479, 806, 816, 881
Sau3AI GATC 1 cut(s) 823
Sau96I GGNCC 1 cut(s) 602
ScaI AGTACT 2 cut(s) 760, 951
ScrFI CCNGG 2 cut(s) 546, 987
SduI GDGCHC 3 cut(s) 186, 304, 735
SetI ASST 9 cut(s) 208, 288, 315, 470, 547, 587, 882, 972, 991
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 3 cut(s) 310, 517, 607
SfcI CTRYAG 1 cut(s) 476
Sfr274I CTCGAG 1 cut(s) 728
SlaI CTCGAG 1 cut(s) 728
SmlI CTYRAG 2 cut(s) 719, 728
SmoI CTYRAG 2 cut(s) 719, 728
SpeI ACTAGT 1 cut(s) 755
Sse9I AATT 7 cut(s) 147, 275, 368, 659, 704, 739, 977
SsiI CCGC 2 cut(s) 152, 805
SspMI CTAG 3 cut(s) 756, 828, 843
StyD4I CCNGG 2 cut(s) 544, 985
TaaI ACNGT 9 cut(s) 16, 97, 220, 337, 379, 385, 394, 425, 462
TaqI TCGA 1 cut(s) 729
TasI AATT 7 cut(s) 147, 275, 368, 659, 704, 739, 977
TatI WGTACW 5 cut(s) 420, 462, 627, 758, 949
TauI GCSGC 2 cut(s) 155, 808
TfiI GAWTC 4 cut(s) 135, 161, 197, 958
Tru1I TTAA 2 cut(s) 743, 1000
Tru9I TTAA 2 cut(s) 743, 1000
TscAI CASTG 2 cut(s) 223, 390
TseFI GTSAC 2 cut(s) 337, 379
TseI GCWGC 5 cut(s) 129, 268, 478, 815, 880
Tsp45I GTSAC 2 cut(s) 337, 379
TspDTI ATGAA 5 cut(s) 48, 684, 717, 787, 851
TspRI CASTG 2 cut(s) 223, 390
Van91I CCANNNNNTGG 1 cut(s) 313
XapI RAATTY 2 cut(s) 275, 739
XhoI CTCGAG 1 cut(s) 728
XspI CTAG 3 cut(s) 756, 828, 843
ZrmI AGTACT 2 cut(s) 760, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.