pycom01g14230

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000204
Physical Location & Seq
Forward (+)
14478899 .. 14479282
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14230.1

Sequence Viewer

Length: 384 bp
ATGAATTTAGCGCTGCAAAGAACACGAGCAAGTTGCCAAGTCCTTCAACTACTCGTAGTATGCAGATGGGCGTTGTCTGAGGTACCTTCGTGGAAACGGCCTGCGGTGGGGTATATTAAAATAAATTGTGATGCGTCATGGTGCTCGCAGACAGGTTTTGGTGGATACGGGTGGGTTGTGCGGTCGTCGGCTGGTATATTTAAAGAGGCTGGTGGCTTTCTGTGCAGCTCTAGTGCGACGGTGGAGCCATATACCATTAGAGCAGGACTAACCGCTTGTCTAGAATGGGGTTTTAGGAAAGCTGAGTTGGAATCAGACGCAAAAAGAGATATTAGATATGGTGACGACAGGGAAGACTACGGAAGGGATCATCCACGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

128

Amino Acids

14.22

Weight (kDa)

8.58

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 42 - 109 5.7e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 82
AciI CCGC 3 cut(s) 104, 181, 273
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 84
AfeI AGCGCT 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 2 cut(s) 228, 302
AluI AGCT 2 cut(s) 228, 302
Alw21I GWGCWC 1 cut(s) 146
AlwI GGATC 1 cut(s) 375
Aor51HI AGCGCT 1 cut(s) 12
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 13, 225
ApoI RAATTY 1 cut(s) 4
Asp718I GGTACC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 353
BaeI ACNNNNGTAYC 2 cut(s) 74, 107
BanI GGYRCC 1 cut(s) 82
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciVI GTATCC 1 cut(s) 158
BfaI CTAG 2 cut(s) 231, 281
BfoI RGCGCY 1 cut(s) 14
BfuI GTATCC 1 cut(s) 158
BisI GCNGC 2 cut(s) 14, 226
BlsI GCNGC 2 cut(s) 15, 227
BmiI GGNNCC 2 cut(s) 84, 246
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 69, 294
BseXI GCAGC 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 3 cut(s) 104, 181, 273
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 70, 295
BspLI GGNNCC 2 cut(s) 84, 246
BspPI GGATC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 82
BssMI GATC 1 cut(s) 367
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 102, 146
BstDEI CTNAG 2 cut(s) 78, 303
BstF5I GGATG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 360
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 102, 146
CfoI GCGC 1 cut(s) 13
CseI GACGC 2 cut(s) 123, 326
Csp6I GTAC 1 cut(s) 83
CviAII CATG 1 cut(s) 138
CviJI RGCY 7 cut(s) 100, 191, 209, 216, 228, 247, 302
CviKI_1 RGCY 7 cut(s) 100, 191, 209, 216, 228, 247, 302
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 78, 303
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraI TTTAAA 1 cut(s) 202
Eco47III AGCGCT 1 cut(s) 12
FaeI CATG 1 cut(s) 141
FaiI YATR 7 cut(s) 61, 114, 139, 197, 250, 252, 339
FatI CATG 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 14, 226
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 14, 226
FspBI CTAG 2 cut(s) 231, 281
GlaI GCGC 1 cut(s) 12
GluI GCNGC 2 cut(s) 14, 226
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 1 cut(s) 100
HgaI GACGC 2 cut(s) 123, 326
HhaI GCGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 141
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 1 cut(s) 311
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 79, 316
Hpy188III TCNNGA 1 cut(s) 281
Hpy99I CGWCG 2 cut(s) 190, 241
HpyAV CCTTC 3 cut(s) 53, 96, 357
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 16, 63, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 78, 303
Hsp92II CATG 1 cut(s) 141
HspAI GCGC 1 cut(s) 11
KpnI GGTACC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 114, 138, 177, 195, 249, 334
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 231, 281
MaeIII GTNAC 1 cut(s) 341
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 4, 124
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 2 cut(s) 73, 199
MseI TTAA 2 cut(s) 117, 201
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 84, 246
NmuCI GTSAC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 15, 227
PspN4I GGNNCC 2 cut(s) 84, 246
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 117, 201
SatI GCNGC 2 cut(s) 14, 226
Sau3AI GATC 1 cut(s) 367
SduI GDGCHC 1 cut(s) 146
SetI ASST 5 cut(s) 84, 88, 157, 230, 304
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 2 cut(s) 4, 124
SsiI CCGC 3 cut(s) 104, 181, 273
SspMI CTAG 2 cut(s) 231, 281
TaaI ACNGT 1 cut(s) 241
TasI AATT 2 cut(s) 4, 124
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 117, 201
Tru9I TTAA 2 cut(s) 117, 201
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 2 cut(s) 13, 225
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 375
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 280
XspI CTAG 2 cut(s) 231, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.