AT1G47497

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000204
Physical Location & Seq
Reverse (-)
17431009 .. 17432401
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47497.2

Sequence Viewer

Length: 417 bp
ATGCCAAGTAAGGCTGGATGGGTAATTCGAGATGAGTCGGGCCAATTTGTAGGTGCAGGTCAAGCGACAGGGAACCACACTTCTAATGCTCTAGAAAGCGAGTTTCAAGCTCTTCTTATCGCAATGCAAAGCTGTTGGAGCCACGGTCATAGAAAAATCTGGTTTGAAGGAGATAACAGGGAGGTGATGGAAATCCTCAATAGGAGAAAATCACGTTTTGATACCTTTAATTGGATAAGAGATGTTCAAGCTTGGAAGCAACGGTTTCAGGAATGCAGATTCACATGGATCAACCGAAAACAGAACAAACCGGCGGATATTCTTGCCAAGAGTCACTTACCCCAGAATGAACAATTTAAATTTTATGATTACATTCCGATTGTAATTTCTTCAGCCTTACAGCTGGAAAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_3 zf-RVT

Protein Analysis

138

Amino Acids

16.26

Weight (kDa)

9.03

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 112 2.4e-36 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 3 cut(s) 107, 167, 248
AluBI AGCT 4 cut(s) 110, 132, 251, 403
AluI AGCT 4 cut(s) 110, 132, 251, 403
AlwI GGATC 1 cut(s) 296
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 196
BccI CCATC 2 cut(s) 12, 181
BfaI CTAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 74, 140
BsaBI GATNNNNATC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 23
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 75
BshFI GGCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 231
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 74, 140
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 146, 264
Bst6I CTCTTC 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 62, 138
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 40
CviAII CATG 1 cut(s) 285
CviJI RGCY 8 cut(s) 14, 42, 110, 132, 141, 251, 395, 403
CviKI_1 RGCY 8 cut(s) 14, 42, 110, 132, 141, 251, 395, 403
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 375
FaeI CATG 1 cut(s) 288
FaiI YATR 3 cut(s) 150, 286, 366
FalI AAGNNNNNCTT 4 cut(s) 99, 131, 320, 352
FatI CATG 1 cut(s) 284
FokI GGATG 1 cut(s) 30
FspBI CTAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 311
Hin1II CATG 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 3 cut(s) 35, 279, 331
HpaII CCGG 1 cut(s) 311
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 3 cut(s) 29, 92, 269
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 146, 264
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 56, 127, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 138
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 1 cut(s) 288
Kzo9I GATC 1 cut(s) 288
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 8 cut(s) 42, 54, 145, 163, 254, 324, 356, 389
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 2 cut(s) 104, 381
MluCI AATT 6 cut(s) 24, 44, 229, 353, 359, 384
MlyI GAGTC 2 cut(s) 44, 340
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 2 cut(s) 175, 206
MseI TTAA 2 cut(s) 228, 357
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 62, 138
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 2 cut(s) 74, 140
NmuCI GTSAC 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 117
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 279
PleI GAGTC 2 cut(s) 43, 339
PpsI GAGTC 2 cut(s) 43, 339
PspN4I GGNNCC 2 cut(s) 74, 140
PspPI GGNCC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 228, 357
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 44, 340
SetI ASST 9 cut(s) 55, 61, 112, 134, 186, 217, 227, 253, 405
SmiI ATTTAAAT 1 cut(s) 358
Sse9I AATT 6 cut(s) 24, 44, 229, 353, 359, 384
SsiI CCGC 1 cut(s) 314
SspMI CTAG 1 cut(s) 92
SwaI ATTTAAAT 1 cut(s) 358
TaaI ACNGT 2 cut(s) 146, 264
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 28
TasI AATT 6 cut(s) 24, 44, 229, 353, 359, 384
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 2 cut(s) 228, 357
Tru9I TTAA 2 cut(s) 228, 357
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 363
XapI RAATTY 1 cut(s) 359
XbaI TCTAGA 1 cut(s) 91
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.