RLG00000031331

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000204
Physical Location & Seq
Forward (+)
4161571 .. 4162200
630 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031331

Sequence Viewer

Length: 630 bp
ATGATGTTAGCCTTTACAAATCTTTGGAGGTGTCAAATTCTAGCTGGTAGCACTACAAAACCCAGTTCGTTTTTAGTGCTCAGAAATTATCGCCAAGAACCGATTCCGGTGACATGGGAAAAGCCGAGAATAGGGTGGAAAAAACTGAATTTTGATGGATCTTCGAAGGGAAAATCAGGAAAAGCCACCATTGGAGGTGTGATTAGGAACCACAAGGCTGAATTCTTGCTCGGATTTGCGGAGTCAATTGGAGAAGCCAACAGCACCATCGCCGAGGTCACAGCCCTTCGAAGAGGCCTCGAGTTTGTGTTAGAAAATGAGTGGAGTCACGTATGGCTTGAAGGTGATGCCAAGGCCATTCTTGACGTCATTAGGAAAAGAAAACAGATGAATAAGATCAGATGTAAAGAAGTTCAAAGGCATGTAAGTCATATAAACTCGATTATACCAAAACTAGACGATTGTATTATTAGTCACGTATATAGGGAAGGTAACCGAGCTGCTGATAAACTTGCTCAGTTAGGGCATCAACAAGACGAGCCTCGGATTTGGCGGTACATTCCCCCCGATGAAGTTGTCGCCATTGTTCACGAAGATGCAGAGGGAAAGATTGTTATACGTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

210

Amino Acids

23.91

Weight (kDa)

9.61

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 50 - 173 3.9e-30 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 369
AciI CCGC 2 cut(s) 239, 553
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 3 cut(s) 36, 148, 221
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 341, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 2 cut(s) 44, 500
AluI AGCT 2 cut(s) 44, 500
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 2 cut(s) 295, 354
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 3 cut(s) 36, 148, 221
Asp700I GAANNNNTTC 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 121, 356
AsuII TTCGAA 2 cut(s) 164, 289
AvaI CYCGRG 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 487
BccI CCATC 2 cut(s) 149, 275
BfaI CTAG 2 cut(s) 41, 455
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 3 cut(s) 337, 535, 586
BmuI ACTGGG 1 cut(s) 57
Bpu14I TTCGAA 2 cut(s) 164, 289
BsaAI YACGTR 3 cut(s) 331, 478, 620
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 273, 351, 542
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 273, 351, 542
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 94, 530
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 487
BshFI GGCC 2 cut(s) 297, 356
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 131
BsnI GGCC 2 cut(s) 297, 356
BsoBI CYCGRG 1 cut(s) 299
Bsp119I TTCGAA 2 cut(s) 164, 289
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 158, 396
BspACI CCGC 2 cut(s) 239, 553
BspANI GGCC 2 cut(s) 297, 356
BspCNI CTCAG 2 cut(s) 93, 529
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 166
BspT104I TTCGAA 2 cut(s) 164, 289
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 273, 351, 542
BssMI GATC 2 cut(s) 158, 396
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 366
BstBAI YACGTR 3 cut(s) 331, 478, 620
BstBI TTCGAA 2 cut(s) 164, 289
BstDEI CTNAG 2 cut(s) 80, 516
BstEII GGTNACC 1 cut(s) 491
BstKTI GATC 2 cut(s) 161, 399
BstMBI GATC 2 cut(s) 158, 396
BstNSI RCATGY 1 cut(s) 425
BstPI GGTNACC 1 cut(s) 491
BstSNI TACGTA 1 cut(s) 620
BstV1I GCAGC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 2 cut(s) 297, 356
BtgZI GCGATG 1 cut(s) 253
Csp6I GTAC 1 cut(s) 556
CviAII CATG 2 cut(s) 114, 422
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 2 cut(s) 80, 516
DpnI GATC 2 cut(s) 160, 398
DpnII GATC 2 cut(s) 158, 396
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco105I TACGTA 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 491
EcoO65I GGTNACC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 117, 425
FaiI YATR 9 cut(s) 115, 334, 423, 432, 434, 446, 481, 483, 617
FatI CATG 2 cut(s) 113, 421
Fnu4HI GCNGC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 2 cut(s) 41, 455
GluI GCNGC 1 cut(s) 501
HaeIII GGCC 2 cut(s) 297, 356
HapII CCGG 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 2 cut(s) 117, 425
HinfI GANTC 3 cut(s) 103, 242, 325
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 121, 356
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 4 cut(s) 83, 233, 401, 546
Hpy188III TCNNGA 3 cut(s) 177, 362, 590
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 4 cut(s) 160, 296, 335, 482
HpyCH4IV ACGT 4 cut(s) 330, 366, 477, 619
HpyCH4V TGCA 1 cut(s) 599
HpyF3I CTNAG 2 cut(s) 80, 516
HpySE526I ACGT 4 cut(s) 330, 366, 477, 619
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 2 cut(s) 117, 425
Kzo9I GATC 2 cut(s) 158, 396
LpnPI CCDG 4 cut(s) 30, 76, 120, 162
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 3 cut(s) 337, 535, 586
MaeI CTAG 2 cut(s) 41, 455
MaeII ACGT 4 cut(s) 330, 366, 477, 619
MaeIII GTNAC 5 cut(s) 109, 277, 326, 473, 491
MalI GATC 2 cut(s) 160, 398
MboI GATC 2 cut(s) 158, 396
MboII GAAGA 3 cut(s) 153, 303, 605
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 5 cut(s) 36, 85, 148, 221, 246
MlyI GAGTC 2 cut(s) 251, 334
MnlI CCTC 7 cut(s) 21, 188, 268, 287, 308, 552, 595
MroXI GAANNNNTTC 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 246
NdeII GATC 2 cut(s) 158, 396
NlaIII CATG 2 cut(s) 117, 425
NlaIV GGNNCC 1 cut(s) 209
NmeAIII GCCGAG 2 cut(s) 150, 298
NmuCI GTSAC 4 cut(s) 109, 277, 326, 473
NspI RCATGY 1 cut(s) 425
NspV TTCGAA 2 cut(s) 164, 289
PaeR7I CTCGAG 1 cut(s) 299
PceI AGGCCT 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 2 cut(s) 250, 333
PpsI GAGTC 2 cut(s) 250, 333
Ppu21I YACGTR 3 cut(s) 331, 478, 620
PspEI GGTNACC 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 209
PspXI VCTCGAGB 1 cut(s) 299
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 594
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 2 cut(s) 158, 396
SchI GAGTC 2 cut(s) 251, 334
SduI GDGCHC 1 cut(s) 81
SfaNI GCATC 3 cut(s) 337, 535, 586
Sfr274I CTCGAG 1 cut(s) 299
SfuI TTCGAA 2 cut(s) 164, 289
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 620
Sse9I AATT 5 cut(s) 36, 85, 148, 221, 246
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 2 cut(s) 239, 553
SspMI CTAG 2 cut(s) 41, 455
StuI AGGCCT 1 cut(s) 297
StyI CCWWGG 1 cut(s) 351
TaiI ACGT 4 cut(s) 333, 369, 480, 622
TaqI TCGA 4 cut(s) 164, 289, 300, 440
TasI AATT 5 cut(s) 36, 85, 148, 221, 246
TfiI GAWTC 1 cut(s) 103
TseFI GTSAC 4 cut(s) 109, 277, 326, 473
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 4 cut(s) 109, 277, 326, 473
TspDTI ATGAA 2 cut(s) 404, 585
XapI RAATTY 3 cut(s) 36, 148, 221
XceI RCATGY 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 41, 455
ZraI GACGTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.