Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 124 - 182 | 7.4e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 483 |
| AclWI | GGATC | 1 cut(s) | 574 |
| AcsI | RAATTY | 2 cut(s) | 160, 610 |
| AcvI | CACGTG | 1 cut(s) | 466 |
| AfaI | GTAC | 1 cut(s) | 190 |
| AflIII | ACRYGT | 2 cut(s) | 463, 465 |
| AgsI | TTSAA | 7 cut(s) | 275, 366, 440, 500, 552, 610, 615 |
| AluBI | AGCT | 5 cut(s) | 121, 311, 443, 525, 602 |
| AluI | AGCT | 5 cut(s) | 121, 311, 443, 525, 602 |
| Alw26I | GTCTC | 1 cut(s) | 385 |
| AlwI | GGATC | 1 cut(s) | 574 |
| ApoI | RAATTY | 2 cut(s) | 160, 610 |
| AspS9I | GGNCC | 1 cut(s) | 315 |
| AvaII | GGWCC | 1 cut(s) | 315 |
| BbrPI | CACGTG | 1 cut(s) | 466 |
| BcoDI | GTCTC | 1 cut(s) | 385 |
| BfaI | CTAG | 1 cut(s) | 56 |
| BmcAI | AGTACT | 1 cut(s) | 190 |
| Bme18I | GGWCC | 1 cut(s) | 315 |
| BmgT120I | GGNCC | 1 cut(s) | 315 |
| BmsI | GCATC | 2 cut(s) | 214, 447 |
| BpuEI | CTTGAG | 1 cut(s) | 369 |
| BsaAI | YACGTR | 1 cut(s) | 466 |
| BsaBI | GATNNNNATC | 1 cut(s) | 111 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 463, 493 |
| Bse1I | ACTGG | 1 cut(s) | 568 |
| Bse8I | GATNNNNATC | 1 cut(s) | 111 |
| BseGI | GGATG | 2 cut(s) | 99, 138 |
| BseJI | GATNNNNATC | 1 cut(s) | 111 |
| BseNI | ACTGG | 1 cut(s) | 568 |
| BsmAI | GTCTC | 1 cut(s) | 385 |
| Bsp143I | GATC | 3 cut(s) | 112, 537, 566 |
| BspPI | GGATC | 1 cut(s) | 574 |
| BsrI | ACTGG | 1 cut(s) | 568 |
| BssMI | GATC | 3 cut(s) | 112, 537, 566 |
| Bst4CI | ACNGT | 2 cut(s) | 63, 217 |
| Bst6I | CTCTTC | 1 cut(s) | 621 |
| BstBAI | YACGTR | 1 cut(s) | 466 |
| BstF5I | GGATG | 2 cut(s) | 99, 138 |
| BstKTI | GATC | 3 cut(s) | 115, 540, 569 |
| BstMAI | GTCTC | 1 cut(s) | 385 |
| BstMBI | GATC | 3 cut(s) | 112, 537, 566 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 2 cut(s) | 99, 138 |
| Cfr13I | GGNCC | 1 cut(s) | 315 |
| Csp6I | GTAC | 1 cut(s) | 189 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 449, 484 |
| CviJI | RGCY | 6 cut(s) | 121, 239, 311, 443, 525, 602 |
| CviKI_1 | RGCY | 6 cut(s) | 121, 239, 311, 443, 525, 602 |
| CviQI | GTAC | 1 cut(s) | 189 |
| DpnI | GATC | 3 cut(s) | 114, 539, 568 |
| DpnII | GATC | 3 cut(s) | 112, 537, 566 |
| DraI | TTTAAA | 2 cut(s) | 9, 67 |
| Eam1104I | CTCTTC | 1 cut(s) | 621 |
| EarI | CTCTTC | 1 cut(s) | 621 |
| Eco47I | GGWCC | 1 cut(s) | 315 |
| Eco72I | CACGTG | 1 cut(s) | 466 |
| EcoRI | GAATTC | 1 cut(s) | 610 |
| FaiI | YATR | 5 cut(s) | 139, 180, 425, 483, 605 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 175, 207, 420, 452, 479, 511 |
| FokI | GGATG | 2 cut(s) | 86, 145 |
| FspBI | CTAG | 1 cut(s) | 56 |
| HindIII | AAGCTT | 2 cut(s) | 441, 523 |
| HinfI | GANTC | 3 cut(s) | 38, 144, 257 |
| Hpy166II | GTNNAC | 1 cut(s) | 558 |
| Hpy188I | TCNGA | 1 cut(s) | 571 |
| Hpy188III | TCNNGA | 4 cut(s) | 56, 148, 247, 294 |
| Hpy8I | GTNNAC | 1 cut(s) | 558 |
| HpyAV | CCTTC | 1 cut(s) | 494 |
| HpyCH4III | ACNGT | 2 cut(s) | 63, 217 |
| HpyCH4IV | ACGT | 1 cut(s) | 465 |
| HpyCH4V | TGCA | 5 cut(s) | 227, 289, 345, 357, 460 |
| HpySE526I | ACGT | 1 cut(s) | 465 |
| Kzo9I | GATC | 3 cut(s) | 112, 537, 566 |
| LpnPI | CCDG | 8 cut(s) | 117, 133, 142, 232, 331, 375, 549, 608 |
| LweI | GCATC | 2 cut(s) | 214, 447 |
| MaeI | CTAG | 1 cut(s) | 56 |
| MaeII | ACGT | 1 cut(s) | 465 |
| MalI | GATC | 3 cut(s) | 114, 539, 568 |
| MboI | GATC | 3 cut(s) | 112, 537, 566 |
| MboII | GAAGA | 3 cut(s) | 547, 586, 638 |
| MfeI | CAATTG | 1 cut(s) | 615 |
| MluCI | AATT | 7 cut(s) | 23, 68, 160, 508, 579, 610, 615 |
| MlyI | GAGTC | 1 cut(s) | 251 |
| MnlI | CCTC | 3 cut(s) | 193, 322, 507 |
| MseI | TTAA | 4 cut(s) | 8, 66, 210, 219 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 615 |
| NdeII | GATC | 3 cut(s) | 112, 537, 566 |
| PfeI | GAWTC | 2 cut(s) | 38, 144 |
| PleI | GAGTC | 1 cut(s) | 251 |
| PmaCI | CACGTG | 1 cut(s) | 466 |
| PmlI | CACGTG | 1 cut(s) | 466 |
| PpsI | GAGTC | 1 cut(s) | 251 |
| Ppu21I | YACGTR | 1 cut(s) | 466 |
| PsiI | TTATAA | 1 cut(s) | 483 |
| PspCI | CACGTG | 1 cut(s) | 466 |
| PspPI | GGNCC | 1 cut(s) | 315 |
| RsaI | GTAC | 1 cut(s) | 190 |
| RsaNI | GTAC | 1 cut(s) | 189 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| SaqAI | TTAA | 4 cut(s) | 8, 66, 210, 219 |
| Sau3AI | GATC | 3 cut(s) | 112, 537, 566 |
| Sau96I | GGNCC | 1 cut(s) | 315 |
| ScaI | AGTACT | 1 cut(s) | 190 |
| SchI | GAGTC | 1 cut(s) | 251 |
| SetI | ASST | 9 cut(s) | 123, 313, 445, 468, 481, 492, 518, 527, 604 |
| SfaNI | GCATC | 2 cut(s) | 214, 447 |
| SinI | GGWCC | 1 cut(s) | 315 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| SmlI | CTYRAG | 1 cut(s) | 384 |
| SmoI | CTYRAG | 1 cut(s) | 384 |
| Sse9I | AATT | 7 cut(s) | 23, 68, 160, 508, 579, 610, 615 |
| SspMI | CTAG | 1 cut(s) | 56 |
| TaaI | ACNGT | 2 cut(s) | 63, 217 |
| TaiI | ACGT | 1 cut(s) | 468 |
| TaqI | TCGA | 5 cut(s) | 78, 115, 255, 351, 416 |
| TaqII | GACCGA | 1 cut(s) | 337 |
| TasI | AATT | 7 cut(s) | 23, 68, 160, 508, 579, 610, 615 |
| TatI | WGTACW | 1 cut(s) | 188 |
| TfiI | GAWTC | 2 cut(s) | 38, 144 |
| Tru1I | TTAA | 4 cut(s) | 8, 66, 210, 219 |
| Tru9I | TTAA | 4 cut(s) | 8, 66, 210, 219 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| TspGWI | ACGGA | 1 cut(s) | 547 |
| VpaK11BI | GGWCC | 1 cut(s) | 315 |
| XapI | RAATTY | 2 cut(s) | 160, 610 |
| XbaI | TCTAGA | 1 cut(s) | 55 |
| XspI | CTAG | 1 cut(s) | 56 |
| ZrmI | AGTACT | 1 cut(s) | 190 |