Rmu_sc0001759.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001759.1
OG0000204
Physical Location & Seq
Forward (+)
23559 .. 24263
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001759.1_g000007.1.cds

Sequence Viewer

Length: 372 bp
atgggagctctctcgttaaaattgggaggagagagagaagcctggcctgccgcctcgtccaaacagcgtcaccgacatcctcaccgccggagaagagcaagaaggaatgggaaaacttccattggatttgttatccgtaattccaaaggaaatccgttaattacagcttgcaggacgataggctctgcaggtactcttattgctgaagctattgcctttcgagaaggtcttcatacagctctgttgcagggtgtcagtcatatcattgcaggaggggactccaagattctaattgattgtataaaaggcaaagcaaatatcccatggacgttgaagatattagttcgtgatattcagtctctagctcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.35

Weight (kDa)

11.52

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AciI CCGC 2 cut(s) 51, 85
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 1 cut(s) 193
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 5 cut(s) 8, 167, 209, 239, 365
AluI AGCT 5 cut(s) 8, 167, 209, 239, 365
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 363
AoxI GGCC 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 62, 74
BanII GRGCYC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 323
BspACI CCGC 2 cut(s) 51, 85
BspANI GGCC 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 48, 169
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 363
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 1 cut(s) 76
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 48, 169
CseI GACGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 192
CviAII CATG 1 cut(s) 324
CviJI RGCY 8 cut(s) 8, 41, 46, 167, 183, 209, 239, 365
CviKI_1 RGCY 8 cut(s) 8, 41, 46, 167, 183, 209, 239, 365
CviQI GTAC 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 1 cut(s) 327
FaiI YATR 4 cut(s) 234, 261, 302, 325
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 327
HinfI GANTC 2 cut(s) 278, 286
HpaII CCGG 1 cut(s) 88
HphI GGTGA 2 cut(s) 62, 74
Hpy188III TCNNGA 2 cut(s) 221, 347
HpyAV CCTTC 2 cut(s) 96, 218
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 4 cut(s) 171, 188, 247, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 1 cut(s) 327
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 8 cut(s) 28, 55, 60, 101, 157, 174, 233, 255
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 68
MboII GAAGA 3 cut(s) 105, 221, 346
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 4 cut(s) 20, 139, 159, 291
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 4 cut(s) 20, 64, 90, 266
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 2 cut(s) 17, 158
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 47
NcoI CCATGG 1 cut(s) 323
NlaIII CATG 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PstI CTGCAG 1 cut(s) 190
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SacI GAGCTC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 17, 158
SatI GCNGC 1 cut(s) 51
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 10
SetI ASST 8 cut(s) 10, 169, 193, 211, 229, 241, 332, 367
SfcI CTRYAG 1 cut(s) 186
Sse9I AATT 4 cut(s) 20, 139, 159, 291
SsiI CCGC 2 cut(s) 51, 85
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 323
TaiI ACGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 220
TasI AATT 4 cut(s) 20, 139, 159, 291
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 17, 158
Tru9I TTAA 2 cut(s) 17, 158
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 2 cut(s) 125, 144
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.