AT2G11205

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000204
Physical Location & Seq
Reverse (-)
4458154 .. 4458399
246 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G11205.1

Sequence Viewer

Length: 246 bp
ATGGTCTTAGTGTCTCTTCTTCAATCTCCTGCACAGCGCTTTGACTTATTCAACTGGGTAACAGAGATCAAGTTATGGGAACGAAGATTTGAAGGTGTCGAATATAACTGGGTCCCAAGAACAGCTAACAAAGCAGCAGATCAGCTTGCACGGAATCAACGTTTATCAACCATCGATTTCTTTTATCACCATTTAATCCCACCATGTATTGCAACTGCTCTGTACGTTGACTCTGTTAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_3 zf-RVT

Protein Analysis

81

Amino Acids

9.55

Weight (kDa)

6.71

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 51 2.8e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 160
AfaI GTAC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 38
AgsI TTSAA 3 cut(s) 23, 52, 92
AluBI AGCT 2 cut(s) 125, 145
AluI AGCT 2 cut(s) 125, 145
Alw26I GTCTC 1 cut(s) 18
Aor51HI AGCGCT 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 40
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 113, 114
BmrI ACTGGG 2 cut(s) 64, 118
BmuI ACTGGG 2 cut(s) 64, 118
Bsa29I ATCGAT 1 cut(s) 174
Bse1I ACTGG 2 cut(s) 59, 113
BseCI ATCGAT 1 cut(s) 174
BseNI ACTGG 2 cut(s) 59, 113
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 174
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 98
Bsp143I GATC 2 cut(s) 66, 139
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 113, 114
BsrI ACTGG 2 cut(s) 59, 113
BssMI GATC 2 cut(s) 66, 139
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 2 cut(s) 69, 142
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 66, 139
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 146
Bsu15I ATCGAT 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 204
CviJI RGCY 2 cut(s) 125, 145
CviKI_1 RGCY 2 cut(s) 125, 145
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 7
DpnI GATC 2 cut(s) 68, 141
DpnII GATC 2 cut(s) 66, 139
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 112
FaeI CATG 1 cut(s) 207
FaiI YATR 3 cut(s) 76, 105, 205
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 203
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 40
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 207
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 154, 230
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 86
HpyCH4IV ACGT 2 cut(s) 160, 225
HpyCH4V TGCA 3 cut(s) 32, 149, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 2 cut(s) 160, 225
Hsp92II CATG 1 cut(s) 207
HspAI GCGC 1 cut(s) 37
KflI GGGWCCC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 66, 139
LpnPI CCDG 3 cut(s) 40, 42, 94
Lsp1109I GCAGC 1 cut(s) 146
MaeII ACGT 2 cut(s) 160, 225
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 68, 141
MboI GATC 2 cut(s) 66, 139
MboII GAAGA 3 cut(s) 8, 11, 96
MlyI GAGTC 1 cut(s) 224
MseI TTAA 2 cut(s) 194, 237
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 66, 139
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 2 cut(s) 113, 114
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 112
Psp1406I AACGTT 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 113, 114
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 194, 237
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 66, 139
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 224
SetI ASST 5 cut(s) 97, 127, 147, 163, 228
SgeI CNNG 8 cut(s) 41, 67, 82, 121, 129, 158, 162, 216
SinI GGWCC 1 cut(s) 112
TaiI ACGT 2 cut(s) 163, 228
TaqI TCGA 2 cut(s) 99, 174
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 194, 237
Tru9I TTAA 2 cut(s) 194, 237
TseI GCWGC 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.