Rmu_sc0000905.1_g000019

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000905.1
OG0000204
Physical Location & Seq
Forward (+)
66753 .. 68018
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000905.1_g000019.1.cds

Sequence Viewer

Length: 555 bp
atggctcctcttcccctgaaggacgtctccgaccgcgttcctccccgaaagcttgccgctgcctcctcctcgtcgaccctaaaaaccgccccagaaccaatccgaagcaatctaaacctgtggttttctcctccagccaaaccacgtccacaaccacacgaaggagatgaagactcgtccttctgtcacttgcagcgccggagcgccctgctgcagacggtatggaagccgccgcttgctacacgaaacctagagggtttcgggggatttgtgtttcgcaatgctgaaggctttcctgttttagtggcttatacttctcttccgtctgttgacatcttaatggcggagagtctctcccttagagctgctttacatgcagctttgatccatgattttcagtctttggacattgaaggcgactcaaaacttcttattgatgctttgacagacaaaaatcaaatcccctggcgcattaaactgctcatccatgacatcaagttgcccagtttggacacaacactcgccctcaggcttggtctaatgctctcccattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.31

Weight (kDa)

7.95

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
AccI GTMKAC 1 cut(s) 74
AccII CGCG 1 cut(s) 36
AciI CCGC 6 cut(s) 34, 57, 87, 230, 233, 344
AclWI GGATC 1 cut(s) 379
AcuI CTGAAG 2 cut(s) 38, 306
AcyI GRCGYC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 413
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 3 cut(s) 52, 365, 380
AluI AGCT 3 cut(s) 52, 365, 380
Alw26I GTCTC 2 cut(s) 31, 356
AlwI GGATC 1 cut(s) 379
ApeKI GCWGC 5 cut(s) 59, 193, 211, 365, 377
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 3 cut(s) 198, 206, 471
AxyI CCTNAGG 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 5 cut(s) 46, 198, 205, 352, 389
BciT130I CCWGG 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 31, 356
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 212
BfoI RGCGCY 2 cut(s) 199, 207
BisI GCNGC 8 cut(s) 57, 60, 194, 212, 230, 233, 366, 378
BlsI GCNGC 8 cut(s) 58, 61, 195, 213, 231, 234, 367, 379
Bme1390I CCNGG 1 cut(s) 466
BmgBI CACGTC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 466
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpmI CTGGAG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 464
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 504
Bse21I CCTNAGG 1 cut(s) 527
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 541
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 3 cut(s) 55, 58, 120
BseXI GCAGC 5 cut(s) 46, 198, 205, 352, 389
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 31, 356
BsmBI CGTCTC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 6 cut(s) 34, 57, 87, 230, 233, 344
BspCNI CTCAG 1 cut(s) 540
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 216
BspPI GGATC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 2 cut(s) 15, 324
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 54, 237
BstDEI CTNAG 2 cut(s) 359, 527
BstF5I GGATG 1 cut(s) 483
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 2 cut(s) 199, 207
BstHHI GCGC 3 cut(s) 198, 206, 471
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 2 cut(s) 31, 356
BstMBI GATC 1 cut(s) 384
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 466
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 1 cut(s) 212
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 5 cut(s) 46, 198, 205, 352, 389
BstV2I GAAGAC 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 527
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 54, 237
CfoI GCGC 3 cut(s) 198, 206, 471
CviAII CATG 3 cut(s) 374, 389, 488
CviJI RGCY 9 cut(s) 5, 52, 137, 229, 291, 308, 365, 380, 532
CviKI_1 RGCY 9 cut(s) 5, 52, 137, 229, 291, 308, 365, 380, 532
DdeI CTNAG 2 cut(s) 359, 527
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 15, 324
EarI CTCTTC 2 cut(s) 15, 324
EciI GGCGGA 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 38, 306
Eco81I CCTNAGG 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 464
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 3 cut(s) 377, 392, 491
FaiI YATR 5 cut(s) 223, 312, 375, 390, 489
FatI CATG 3 cut(s) 373, 388, 487
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 8 cut(s) 57, 60, 194, 212, 230, 233, 366, 378
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 8 cut(s) 57, 60, 194, 212, 230, 233, 366, 378
FspBI CTAG 1 cut(s) 251
GlaI GCGC 3 cut(s) 197, 205, 470
GluI GCNGC 8 cut(s) 57, 60, 194, 212, 230, 233, 366, 378
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 2 cut(s) 199, 207
HapII CCGG 1 cut(s) 199
HhaI GCGC 3 cut(s) 198, 206, 471
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 3 cut(s) 377, 392, 491
Hin6I GCGC 3 cut(s) 196, 204, 469
HinP1I GCGC 3 cut(s) 196, 204, 469
HincII GTYRAC 2 cut(s) 75, 331
HindII GTYRAC 2 cut(s) 75, 331
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 173, 349, 419
HpaII CCGG 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 75, 149, 331
Hpy188I TCNGA 2 cut(s) 31, 104
Hpy8I GTNNAC 3 cut(s) 75, 149, 331
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 5 cut(s) 13, 155, 190, 281, 407
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 24, 145
HpyCH4V TGCA 3 cut(s) 193, 214, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 2 cut(s) 359, 527
HpySE526I ACGT 2 cut(s) 24, 145
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 3 cut(s) 377, 392, 491
HspAI GCGC 3 cut(s) 196, 204, 469
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 2 cut(s) 10, 201
Lsp1109I GCAGC 5 cut(s) 46, 198, 205, 352, 389
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 251
MaeII ACGT 2 cut(s) 24, 145
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 2 cut(s) 182, 311
MlyI GAGTC 3 cut(s) 167, 358, 413
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 8 cut(s) 18, 51, 73, 76, 79, 141, 247, 536
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 338, 474
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 1 cut(s) 384
NlaIII CATG 3 cut(s) 377, 392, 491
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 291
PkrI GCNGC 8 cut(s) 58, 61, 195, 213, 231, 234, 367, 379
PleI GAGTC 3 cut(s) 167, 357, 413
PpsI GAGTC 3 cut(s) 167, 357, 413
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 338
SalI GTCGAC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 338, 474
SatI GCNGC 8 cut(s) 57, 60, 194, 212, 230, 233, 366, 378
Sau3AI GATC 1 cut(s) 384
SchI GAGTC 3 cut(s) 167, 358, 413
ScrFI CCNGG 1 cut(s) 466
SetI ASST 7 cut(s) 27, 54, 120, 148, 252, 367, 382
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 338
SsiI CCGC 6 cut(s) 34, 57, 87, 230, 233, 344
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 464
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 2 cut(s) 27, 148
TaqI TCGA 1 cut(s) 74
TauI GCSGC 3 cut(s) 59, 232, 235
Tru1I TTAA 2 cut(s) 338, 474
Tru9I TTAA 2 cut(s) 338, 474
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 5 cut(s) 59, 193, 211, 365, 377
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 312
XceI RCATGY 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 251
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.