Rorug02G0107100

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000204
Physical Location & Seq
Reverse (-)
9144595 .. 9145623
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0107100.1

Sequence Viewer

Length: 615 bp
ATGGATGCTCGACAGTATTTTGACCTCATCAACGGTTCTGGACCTCAAAATGTTATGTCCCAAAACACTAACACATCCTCACCAGCCCGACCTTCTTCCTCAGCCGATAGGAGGCAGCAGCTACGTCGACCAAGCCAAACTGCAGGACCTCAACCGAAAAGGCCGAGAACCGAGGCTCCGGTGCAACCTCAACCGCCGCGCCAAGCGGCCCAGAACCCCACATTTCATCCTGCTCTCAACAACGTCAATGGGGGCGGCACCGGAAGGGAACAAAGGCCCCACTTGTACCATTTTGAGGCAAAGTTAACAAGGATTTACTTAAGCGAGCAAGAGTACCAGTCTGTTGCACGTTGCTTGGAGCCTATACCTGAGAAGCTTCCGCTAGTGCAGGTAATGGCGTCGATGGCAGAAAAAATGGTACCAGTGGGGATTCCGGTTCCCATGCCGGTTCTTCGGCAGAGAAATATCCTGTTCCCCACCGAGCCGCCATCTTTCCGGGCAGTTGCAGAAGACATGGGTAGTTCACCAGACACTGAGCCTGGGAGGAAGGTTGTAGACCTGAGGAAACTTCGAGTTCCTAAGCCAGAGGAGGAGGATATAGATCTTAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

204

Amino Acids

22.77

Weight (kDa)

9.41

Isoelectric Point (pI)

82.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
Acc65I GGTACC 1 cut(s) 418
AccB1I GGYRCC 2 cut(s) 257, 418
AccI GTMKAC 2 cut(s) 127, 555
AccII CGCG 1 cut(s) 199
AciI CCGC 6 cut(s) 194, 197, 206, 255, 380, 485
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 3 cut(s) 287, 335, 420
AfiI CCNNNNNNNGG 2 cut(s) 111, 295
AflII CTTAAG 1 cut(s) 319
AjnI CCWGG 1 cut(s) 538
AloI GAACNNNNNNTCC 2 cut(s) 160, 192
AluBI AGCT 3 cut(s) 121, 376, 609
AluI AGCT 3 cut(s) 121, 376, 609
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 3 cut(s) 161, 207, 275
ApeKI GCWGC 2 cut(s) 115, 118
Asp718I GGTACC 1 cut(s) 418
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 4 cut(s) 41, 146, 208, 276
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 72, 516
AvaII GGWCC 2 cut(s) 41, 146
AxyI CCTNAGG 1 cut(s) 560
BanI GGYRCC 2 cut(s) 257, 418
BbsI GAAGAC 1 cut(s) 516
BbvCI CCTCAGC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 127, 130
BccI CCATC 2 cut(s) 397, 496
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 540
BcnI CCSGG 1 cut(s) 497
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 379
BglII AGATCT 1 cut(s) 601
BisI GCNGC 6 cut(s) 116, 119, 197, 207, 256, 485
BlsI GCNGC 6 cut(s) 117, 120, 198, 208, 257, 486
Bme1390I CCNGG 2 cut(s) 497, 540
Bme18I GGWCC 2 cut(s) 41, 146
BmgT120I GGNCC 4 cut(s) 41, 146, 208, 276
BmiI GGNNCC 6 cut(s) 177, 259, 278, 360, 420, 438
BmrFI CCNGG 2 cut(s) 497, 540
BpiI GAAGAC 1 cut(s) 516
Bpu10I CCTNAGC 2 cut(s) 100, 579
BpuMI CCSGG 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 171, 539
BsaWI WCCGGW 3 cut(s) 178, 260, 433
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 295
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 2 cut(s) 337, 422
Bse21I CCTNAGG 1 cut(s) 560
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 2 cut(s) 171, 539
BseGI GGATG 3 cut(s) 10, 74, 226
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 2 cut(s) 111, 295
BseMII CTCAG 4 cut(s) 114, 360, 525, 551
BseNI ACTGG 2 cut(s) 337, 422
BseRI GAGGAG 2 cut(s) 602, 605
BseXI GCAGC 2 cut(s) 127, 130
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 163, 209, 277
BshNI GGYRCC 2 cut(s) 257, 418
BsiSI CCGG 5 cut(s) 179, 261, 434, 446, 496
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 111, 295
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 3 cut(s) 163, 209, 277
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 6 cut(s) 194, 197, 206, 255, 380, 485
BspANI GGCC 3 cut(s) 163, 209, 277
BspCNI CTCAG 4 cut(s) 113, 361, 526, 552
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 6 cut(s) 177, 259, 278, 360, 420, 438
BspMAI CTGCAG 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 379
BspT107I GGYRCC 2 cut(s) 257, 418
BspTI CTTAAG 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 2 cut(s) 337, 422
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 171, 539
BssMI GATC 1 cut(s) 601
BssNI GRCGYC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 15, 35
BstACI GRCGYC 1 cut(s) 398
BstAFI CTTAAG 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 6 cut(s) 100, 369, 534, 560, 579, 605
BstF5I GGATG 3 cut(s) 10, 74, 226
BstFNI CGCG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 1 cut(s) 604
BstMBI GATC 1 cut(s) 601
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 495, 538
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 127, 130
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
Bsu36I CCTNAGG 1 cut(s) 560
BsuRI GGCC 3 cut(s) 163, 209, 277
BtsCI GGATG 3 cut(s) 10, 74, 226
BtsIMutI CAGTG 2 cut(s) 429, 531
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 326
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 4 cut(s) 41, 146, 208, 276
CseI GACGC 1 cut(s) 387
Csp6I GTAC 3 cut(s) 286, 334, 419
CviAII CATG 2 cut(s) 442, 514
CviQI GTAC 3 cut(s) 286, 334, 419
DdeI CTNAG 6 cut(s) 100, 369, 534, 560, 579, 605
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
Eco47I GGWCC 2 cut(s) 41, 146
Eco81I CCTNAGG 1 cut(s) 560
EcoO109I RGGNCCY 2 cut(s) 146, 276
EcoRII CCWGG 1 cut(s) 538
FaeI CATG 2 cut(s) 445, 517
FaiI YATR 5 cut(s) 56, 365, 443, 515, 599
FaqI GGGAC 1 cut(s) 43
FatI CATG 2 cut(s) 441, 513
FblI GTMKAC 2 cut(s) 127, 555
Fnu4HI GCNGC 6 cut(s) 116, 119, 197, 207, 256, 485
FokI GGATG 3 cut(s) 17, 61, 213
Fsp4HI GCNGC 6 cut(s) 116, 119, 197, 207, 256, 485
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 200
GluI GCNGC 6 cut(s) 116, 119, 197, 207, 256, 485
HaeIII GGCC 3 cut(s) 163, 209, 277
HapII CCGG 5 cut(s) 179, 261, 434, 446, 496
HgaI GACGC 1 cut(s) 387
HhaI GCGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 2 cut(s) 445, 517
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 2 cut(s) 128, 306
HindII GTYRAC 2 cut(s) 128, 306
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 430
HpaI GTTAAC 1 cut(s) 306
HpaII CCGG 5 cut(s) 179, 261, 434, 446, 496
HphI GGTGA 2 cut(s) 72, 516
Hpy166II GTNNAC 4 cut(s) 128, 306, 524, 556
Hpy188III TCNNGA 1 cut(s) 39
Hpy8I GTNNAC 4 cut(s) 128, 306, 524, 556
Hpy99I CGWCG 2 cut(s) 129, 403
HpyAV CCTTC 3 cut(s) 102, 258, 541
HpyCH4III ACNGT 2 cut(s) 15, 35
HpyCH4IV ACGT 3 cut(s) 124, 243, 349
HpyCH4V TGCA 5 cut(s) 143, 184, 347, 388, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 6 cut(s) 100, 369, 534, 560, 579, 605
HpySE526I ACGT 3 cut(s) 124, 243, 349
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 2 cut(s) 445, 517
HspAI GCGC 1 cut(s) 199
KpnI GGTACC 1 cut(s) 422
KspAI GTTAAC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 601
LmnI GCTCC 2 cut(s) 181, 358
Lsp1109I GCAGC 2 cut(s) 127, 130
MaeI CTAG 1 cut(s) 383
MaeII ACGT 3 cut(s) 124, 243, 349
MalI GATC 1 cut(s) 603
MboI GATC 1 cut(s) 601
MboII GAAGA 3 cut(s) 87, 443, 521
MflI RGATCY 1 cut(s) 601
MseI TTAA 2 cut(s) 305, 320
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 5 cut(s) 179, 261, 434, 446, 496
MspR9I CCNGG 2 cut(s) 497, 540
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 404
NciI CCSGG 1 cut(s) 497
NdeII GATC 1 cut(s) 601
NlaIII CATG 2 cut(s) 445, 517
NlaIV GGNNCC 6 cut(s) 177, 259, 278, 360, 420, 438
NmeAIII GCCGAG 1 cut(s) 189
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 6 cut(s) 117, 120, 198, 208, 257, 486
PpuMI RGGWCCY 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 6 cut(s) 177, 259, 278, 360, 420, 438
PspPI GGNCC 4 cut(s) 41, 146, 208, 276
PspPPI RGGWCCY 1 cut(s) 146
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 3 cut(s) 287, 335, 420
RsaNI GTAC 3 cut(s) 286, 334, 419
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 305, 320
SatI GCNGC 6 cut(s) 116, 119, 197, 207, 256, 485
Sau3AI GATC 1 cut(s) 601
Sau96I GGNCC 4 cut(s) 41, 146, 208, 276
ScrFI CCNGG 2 cut(s) 497, 540
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 2 cut(s) 41, 146
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SsiI CCGC 6 cut(s) 194, 197, 206, 255, 380, 485
SspMI CTAG 1 cut(s) 383
StyD4I CCNGG 2 cut(s) 495, 538
TaaI ACNGT 2 cut(s) 15, 35
TaiI ACGT 3 cut(s) 127, 246, 352
TaqI TCGA 4 cut(s) 10, 127, 401, 571
TauI GCSGC 4 cut(s) 199, 209, 258, 487
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 2 cut(s) 305, 320
Tru9I TTAA 2 cut(s) 305, 320
TscAI CASTG 2 cut(s) 429, 538
TseI GCWGC 2 cut(s) 115, 118
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 2 cut(s) 429, 538
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 41, 146
XmiI GTMKAC 2 cut(s) 127, 555
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.