FvH4_6g53051

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000204
Physical Location & Seq
Forward (+)
38964189 .. 38964681
493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53051.t1

Sequence Viewer

Length: 255 bp
ATGACTGGATCTCCCAAATGGGGAAACCTATCTCACCGTCATGCTCACCCTCCTCCTTCCCATATTAAATGGCATCCTCCCCCTCTAAATAGTCTCAAAGCCAATTTTGATGGTTCGGTGCTTCCTCCTTCCCGCGCTGCTGCTGGTTTTGTAGTTCGCAATTCTGATGGCATCCCAGTTCTTGTTACTAGCCAAAATCTTGGTCACATGGACATTCTTTTTGCAGAGGTTGTTGCTCTCCGTGCTGGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

85

Amino Acids

8.99

Weight (kDa)

10.26

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 16
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 137, 140
ArsI GACNNNNNNTTYG 4 cut(s) 187, 203, 219, 235
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 26, 38
BbvI GCAGC 2 cut(s) 124, 127
BccI CCATC 2 cut(s) 104, 161
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 2 cut(s) 138, 141
BlsI GCNGC 2 cut(s) 139, 142
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 82, 180
BmuI ACTGGG 1 cut(s) 170
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 10, 176
BseGI GGATG 2 cut(s) 73, 171
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 10, 176
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 124, 127
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 249
BspFNI CGCG 1 cut(s) 135
BspPI GGATC 1 cut(s) 16
BsrI ACTGG 2 cut(s) 10, 176
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 247
BstF5I GGATG 2 cut(s) 73, 171
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 251
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 124, 127
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 2 cut(s) 73, 171
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 137
CviAII CATG 2 cut(s) 41, 208
CviJI RGCY 3 cut(s) 101, 192, 249
CviKI_1 RGCY 3 cut(s) 101, 192, 249
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
FaeI CATG 2 cut(s) 44, 211
FaiI YATR 3 cut(s) 42, 63, 209
FatI CATG 2 cut(s) 40, 207
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 138, 141
FokI GGATG 2 cut(s) 60, 158
Fsp4HI GCNGC 2 cut(s) 138, 141
FspBI CTAG 1 cut(s) 189
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 138, 141
HaeIII GGCC 1 cut(s) 249
HhaI GCGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 44, 211
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HphI GGTGA 2 cut(s) 26, 38
Hpy188I TCNGA 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 66, 138
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 44, 211
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 129, 189, 231
Lsp1109I GCAGC 2 cut(s) 124, 127
LweI GCATC 2 cut(s) 82, 180
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 184, 203
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MflI RGATCY 1 cut(s) 8
MluCI AATT 2 cut(s) 103, 160
MnlI CCTC 6 cut(s) 60, 63, 87, 93, 135, 220
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 39
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 8
NlaIII CATG 2 cut(s) 44, 211
NmuCI GTSAC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 139, 142
PsuI RGATCY 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 138, 141
Sau3AI GATC 1 cut(s) 8
SetI ASST 2 cut(s) 30, 231
SfaNI GCATC 2 cut(s) 82, 180
SfcI CTRYAG 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 2 cut(s) 103, 160
SsiI CCGC 1 cut(s) 133
SspMI CTAG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 38
TasI AATT 2 cut(s) 103, 160
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 137, 140
Tsp45I GTSAC 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 230
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.