MD14G1209300.v1.1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000204
Physical Location & Seq
Forward (+)
29549791 .. 29550371
581 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1209300.v1.1.491

Sequence Viewer

Length: 417 bp
ATGATGGGCCAAGTTGTGGATGCGGGTGCCTTCAATCTTGATGGGGTCACTATTTCGTTTGCTGAAGCGATGGGCTTAAAAAGAAGGATTCAAGTTTGCTCGGTCCAAGGGCCTCCAAAAGGTGATGATAAGAGGGAGACTCCAAGCTTGTTATTGAGGCGGTTCAAAGAAATTGGGAGGTTCCTTGGAAGATTAGAACCATCATTGAGGATGCACGTGGTATTGCTTGCTCCTTTTAGTCAAGTGGCGTGGAACCATATCTGCCAGGGAGGCAAATTTGTCGCGGATGCCTTAGCTCACTTGGGTCTTTCGGTTGAGACTCCTCACATTTGGGATCATGGCTTACCCTCTATTGCTCTAAATGCTTTTAGTTTTGACAGTATTAGAAACGGTTGTTCTCGTGGTTTTTCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

139

Amino Acids

15.1

Weight (kDa)

9.02

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 284
AciI CCGC 3 cut(s) 23, 160, 284
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 84
AcvI CACGTG 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 16, 119
AgsI TTSAA 3 cut(s) 34, 92, 166
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 2 cut(s) 147, 296
AluI AGCT 2 cut(s) 147, 296
Alw26I GTCTC 2 cut(s) 131, 311
AlwI GGATC 1 cut(s) 342
AoxI GGCC 2 cut(s) 7, 110
ApoI RAATTY 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 7, 103, 110
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 26
BauI CACGAG 1 cut(s) 399
BbrPI CACGTG 1 cut(s) 217
BccI CCATC 3 cut(s) 35, 64, 208
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 131, 311
BglI GCCNNNNNGGC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 3 cut(s) 7, 103, 110
BmiI GGNNCC 3 cut(s) 28, 182, 254
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 3 cut(s) 10, 201, 277
BplI GAGNNNNNCTC 2 cut(s) 124, 156
Bpu10I CCTNAGC 1 cut(s) 292
BsaAI YACGTR 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 106, 184, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 119
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 106, 184, 265
BseGI GGATG 3 cut(s) 25, 216, 292
BseLI CCNNNNNNNGG 2 cut(s) 16, 119
BseRI GAGGAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 9, 112
BshNI GGYRCC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 16, 119
BsmAI GTCTC 2 cut(s) 131, 311
BsnI GGCC 2 cut(s) 9, 112
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 3 cut(s) 23, 160, 284
BspANI GGCC 2 cut(s) 9, 112
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 3 cut(s) 28, 182, 254
BspPI GGATC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 106, 184, 265
BssMI GATC 1 cut(s) 334
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 2 cut(s) 106, 184
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 380, 392
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 25, 216, 292
BstFNI CGCG 1 cut(s) 284
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 131, 311
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 270, 362
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstUI CGCG 1 cut(s) 284
BsuRI GGCC 2 cut(s) 9, 112
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 3 cut(s) 25, 216, 292
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 7, 103, 110
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
CviAII CATG 1 cut(s) 338
CviJI RGCY 6 cut(s) 9, 75, 112, 147, 296, 342
CviKI_1 RGCY 6 cut(s) 9, 75, 112, 147, 296, 342
DdeI CTNAG 1 cut(s) 292
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 106, 184
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 84
Eco72I CACGTG 1 cut(s) 217
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 2 cut(s) 106, 184
ErhI CCWWGG 2 cut(s) 106, 184
FaeI CATG 1 cut(s) 341
FaiI YATR 2 cut(s) 258, 339
FatI CATG 1 cut(s) 337
FauI CCCGC 1 cut(s) 16
FokI GGATG 3 cut(s) 32, 223, 299
HaeIII GGCC 2 cut(s) 9, 112
Hin1II CATG 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 3 cut(s) 88, 139, 319
HphI GGTGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 40, 78
HpyCH4III ACNGT 2 cut(s) 380, 392
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 270, 362
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 341
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 2 cut(s) 251, 278
LweI GCATC 3 cut(s) 10, 201, 277
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 1 cut(s) 201
MluCI AATT 2 cut(s) 171, 275
MlyI GAGTC 2 cut(s) 133, 313
MnlI CCTC 8 cut(s) 123, 126, 150, 171, 201, 263, 333, 358
MseI TTAA 2 cut(s) 77, 415
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 270, 362
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 3 cut(s) 28, 182, 254
NmuCI GTSAC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 88
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 2 cut(s) 133, 313
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 2 cut(s) 133, 313
Ppu21I YACGTR 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 264
PspCI CACGTG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 3 cut(s) 28, 182, 254
PspPI GGNCC 3 cut(s) 7, 103, 110
SaqAI TTAA 2 cut(s) 77, 415
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 3 cut(s) 7, 103, 110
SchI GAGTC 2 cut(s) 133, 313
ScrFI CCNGG 1 cut(s) 266
SetI ASST 5 cut(s) 124, 149, 182, 219, 298
SfaNI GCATC 3 cut(s) 10, 201, 277
SinI GGWCC 1 cut(s) 103
Sse9I AATT 2 cut(s) 171, 275
SsiI CCGC 3 cut(s) 23, 160, 284
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 2 cut(s) 106, 184
TaaI ACNGT 2 cut(s) 380, 392
TaiI ACGT 1 cut(s) 219
TaqII GACCGA 1 cut(s) 91
TasI AATT 2 cut(s) 171, 275
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 77, 415
Tru9I TTAA 2 cut(s) 77, 415
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.