FvH4_3g24081

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000204
Physical Location & Seq
Reverse (-)
17117809 .. 17125504
7696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24081.t1

Sequence Viewer

Length: 501 bp
ATGGAGAAAGAAGATGTTGCTACGAAGGTGATGAGAGGATTATGCGCTACTGGCCGGAATATACCATTTGATGTGTCGAGAAATCCTCAGTTTCATGAGATGTATTCAGCTATAAATAATGGACCCAAGGGTTATAAGGCTCCGTATGAAGGAGCAAGAACTTCTCTACCTGGTTTTGTTGTGCGTGATTCTCTTGGTCAACCAATCCTTGCTTCCTCAAAAAAGTTGGGGATTGCTAATGCCCTTGTAGCAGAAGCGCTAGCCTTACGGGAAGGTCTTCTACAACTTAAGCAACACTCGTCTCAAGCTCTCATCATTGAAGGCGATTCCAAAATCCTTATTGATGTCTTACTTGGTAACTCAGAATGTCCATGGAGGATTAAAGTACTTGTGCATGATATCCAGCAGCTTATGCATCATTTTGAAGCTGTTTCCTTCAAACGTGTCGGGCGAGAAGCCAATTTCGTGACAGTTGCCTTGCTTCCTTGGGGCACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

167

Amino Acids

18.28

Weight (kDa)

8.95

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 56 - 156 3.2e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 52
AfaI GTAC 1 cut(s) 387
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 149
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 3 cut(s) 320, 425, 439
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 4 cut(s) 110, 308, 409, 428
AluI AGCT 4 cut(s) 110, 308, 409, 428
Alw26I GTCTC 1 cut(s) 306
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 406
Asp700I GAANNNNTTC 1 cut(s) 276
AspLEI GCGC 2 cut(s) 47, 259
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 259
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 260
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
BmcAI AGTACT 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 124, 141
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 424
BmtI GCTAGC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpuEI CTTGAG 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 126, 371, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 126, 371, 485
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 101, 375
BseNI ACTGG 1 cut(s) 55
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 1 cut(s) 418
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 306
BsmBI CGTCTC 1 cut(s) 306
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 494
Bsp19I CCATGG 1 cut(s) 371
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 2 cut(s) 100, 374
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 124, 141
BspOI GCTAGC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 287
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 126, 371, 485
BssT1I CCWWGG 3 cut(s) 126, 371, 485
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 472
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 87, 361
BstDSI CCRYGG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 2 cut(s) 47, 259
BstMAI GTCTC 1 cut(s) 306
BstMWI GCNNNNNNNGC 3 cut(s) 51, 248, 412
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 261
CciI TCATGA 1 cut(s) 94
CfoI GCGC 2 cut(s) 47, 259
Cfr13I GGNCC 1 cut(s) 122
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 1 cut(s) 386
CviAII CATG 3 cut(s) 95, 372, 395
CviJI RGCY 8 cut(s) 54, 110, 140, 263, 308, 409, 428, 458
CviKI_1 RGCY 8 cut(s) 54, 110, 140, 263, 308, 409, 428, 458
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 2 cut(s) 87, 361
EaeI YGGCCR 1 cut(s) 52
Eco130I CCWWGG 3 cut(s) 126, 371, 485
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 122
Eco47III AGCGCT 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 169
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 3 cut(s) 126, 371, 485
EcoT22I ATGCAT 1 cut(s) 417
ErhI CCWWGG 3 cut(s) 126, 371, 485
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 3 cut(s) 98, 375, 398
FaiI YATR 9 cut(s) 43, 62, 96, 113, 135, 147, 373, 396, 413
FatI CATG 3 cut(s) 94, 371, 394
Fnu4HI GCNGC 1 cut(s) 407
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 46, 258
GluI GCNGC 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 55
HhaI GCGC 2 cut(s) 47, 259
Hin1II CATG 3 cut(s) 98, 375, 398
Hin6I GCGC 2 cut(s) 45, 257
HinP1I GCGC 2 cut(s) 45, 257
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HinfI GANTC 2 cut(s) 188, 326
HpaII CCGG 1 cut(s) 55
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 3 cut(s) 78, 95, 466
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 5 cut(s) 19, 143, 266, 314, 445
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 394, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 248, 412
HpyF3I CTNAG 2 cut(s) 87, 361
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 3 cut(s) 98, 375, 398
HspAI GCGC 2 cut(s) 45, 257
LmnI GCTCC 2 cut(s) 145, 152
LpnPI CCDG 5 cut(s) 36, 68, 156, 183, 416
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 1 cut(s) 424
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 2 cut(s) 356, 466
MboII GAAGA 2 cut(s) 23, 269
MhlI GDGCHC 1 cut(s) 494
MluCI AATT 1 cut(s) 460
MnlI CCTC 4 cut(s) 29, 96, 226, 369
Mph1103I ATGCAT 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 2 cut(s) 288, 381
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 51, 248, 412
NcoI CCATGG 1 cut(s) 371
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 3 cut(s) 98, 375, 398
NlaIV GGNNCC 2 cut(s) 124, 141
NmuCI GTSAC 1 cut(s) 466
NsiI ATGCAT 1 cut(s) 417
PagI TCATGA 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 188, 326
PkrI GCNGC 1 cut(s) 408
PsiI TTATAA 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 124, 141
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SaqAI TTAA 2 cut(s) 288, 381
SatI GCNGC 1 cut(s) 407
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 494
SetI ASST 8 cut(s) 30, 112, 172, 277, 310, 411, 430, 445
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 287, 303
SmoI CTYRAG 2 cut(s) 287, 303
Sse9I AATT 1 cut(s) 460
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 3 cut(s) 126, 371, 485
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 77
TasI AATT 1 cut(s) 460
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 2 cut(s) 188, 326
Tru1I TTAA 2 cut(s) 288, 381
Tru9I TTAA 2 cut(s) 288, 381
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 83, 162
TspGWI ACGGA 1 cut(s) 132
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.