Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 22 - 59 | 6.8e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 107, 148 |
| AgsI | TTSAA | 2 cut(s) | 83, 139 |
| AjnI | CCWGG | 1 cut(s) | 59 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| Alw26I | GTCTC | 1 cut(s) | 193 |
| ApoI | RAATTY | 2 cut(s) | 107, 148 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 107 |
| BanII | GRGCYC | 1 cut(s) | 60 |
| BciT130I | CCWGG | 1 cut(s) | 61 |
| BciVI | GTATCC | 1 cut(s) | 5 |
| BcoDI | GTCTC | 1 cut(s) | 193 |
| BfaI | CTAG | 1 cut(s) | 171 |
| BfuI | GTATCC | 1 cut(s) | 5 |
| Bme1390I | CCNGG | 1 cut(s) | 61 |
| BmiI | GGNNCC | 1 cut(s) | 46 |
| BmrFI | CCNGG | 1 cut(s) | 61 |
| BmsI | GCATC | 1 cut(s) | 151 |
| BpuEI | CTTGAG | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 2 cut(s) | 40, 59 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 95, 125 |
| BseBI | CCWGG | 1 cut(s) | 61 |
| BseDI | CCNNGG | 2 cut(s) | 40, 59 |
| BseMII | CTCAG | 2 cut(s) | 45, 204 |
| BsmAI | GTCTC | 1 cut(s) | 193 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| BspCNI | CTCAG | 2 cut(s) | 46, 203 |
| BspLI | GGNNCC | 1 cut(s) | 46 |
| BssECI | CCNNGG | 2 cut(s) | 40, 59 |
| BssT1I | CCWWGG | 1 cut(s) | 40 |
| Bst2UI | CCWGG | 1 cut(s) | 61 |
| Bst4CI | ACNGT | 1 cut(s) | 179 |
| BstC8I | GCNNGC | 1 cut(s) | 132 |
| BstDEI | CTNAG | 2 cut(s) | 54, 190 |
| BstMAI | GTCTC | 1 cut(s) | 193 |
| BstNI | CCWGG | 1 cut(s) | 61 |
| BstSCI | CCNGG | 1 cut(s) | 59 |
| BsuI | GTATCC | 1 cut(s) | 5 |
| Cac8I | GCNNGC | 1 cut(s) | 132 |
| CviAII | CATG | 1 cut(s) | 200 |
| CviJI | RGCY | 1 cut(s) | 58 |
| CviKI_1 | RGCY | 1 cut(s) | 58 |
| DdeI | CTNAG | 2 cut(s) | 54, 190 |
| Eco130I | CCWWGG | 1 cut(s) | 40 |
| Eco24I | GRGCYC | 1 cut(s) | 60 |
| EcoRII | CCWGG | 1 cut(s) | 59 |
| EcoT14I | CCWWGG | 1 cut(s) | 40 |
| EcoT38I | GRGCYC | 1 cut(s) | 60 |
| ErhI | CCWWGG | 1 cut(s) | 40 |
| FaeI | CATG | 1 cut(s) | 203 |
| FaiI | YATR | 2 cut(s) | 184, 201 |
| FatI | CATG | 1 cut(s) | 199 |
| FriOI | GRGCYC | 1 cut(s) | 60 |
| FspBI | CTAG | 1 cut(s) | 171 |
| Hin1II | CATG | 1 cut(s) | 203 |
| HinfI | GANTC | 2 cut(s) | 28, 64 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| Hpy188III | TCNNGA | 1 cut(s) | 70 |
| HpyAV | CCTTC | 1 cut(s) | 145 |
| HpyCH4III | ACNGT | 1 cut(s) | 179 |
| HpyF3I | CTNAG | 2 cut(s) | 54, 190 |
| Hsp92II | CATG | 1 cut(s) | 203 |
| LpnPI | CCDG | 4 cut(s) | 46, 61, 73, 177 |
| LweI | GCATC | 1 cut(s) | 151 |
| MaeI | CTAG | 1 cut(s) | 171 |
| MboII | GAAGA | 1 cut(s) | 95 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MluCI | AATT | 2 cut(s) | 107, 148 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MnlI | CCTC | 1 cut(s) | 120 |
| MroXI | GAANNNNTTC | 1 cut(s) | 107 |
| MseI | TTAA | 2 cut(s) | 23, 120 |
| MspR9I | CCNGG | 1 cut(s) | 61 |
| MvaI | CCWGG | 1 cut(s) | 61 |
| NlaIII | CATG | 1 cut(s) | 203 |
| NlaIV | GGNNCC | 1 cut(s) | 46 |
| PdmI | GAANNNNTTC | 1 cut(s) | 107 |
| PfeI | GAWTC | 2 cut(s) | 28, 64 |
| Psp6I | CCWGG | 1 cut(s) | 59 |
| PspGI | CCWGG | 1 cut(s) | 59 |
| PspN4I | GGNNCC | 1 cut(s) | 46 |
| SaqAI | TTAA | 2 cut(s) | 23, 120 |
| ScrFI | CCNGG | 1 cut(s) | 61 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SetI | ASST | 2 cut(s) | 95, 196 |
| SfaNI | GCATC | 1 cut(s) | 151 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 2 cut(s) | 107, 148 |
| SspMI | CTAG | 1 cut(s) | 171 |
| StyD4I | CCNGG | 1 cut(s) | 59 |
| StyI | CCWWGG | 1 cut(s) | 40 |
| TaaI | ACNGT | 1 cut(s) | 179 |
| TaqI | TCGA | 1 cut(s) | 101 |
| TasI | AATT | 2 cut(s) | 107, 148 |
| TfiI | GAWTC | 2 cut(s) | 28, 64 |
| Tru1I | TTAA | 2 cut(s) | 23, 120 |
| Tru9I | TTAA | 2 cut(s) | 23, 120 |
| XapI | RAATTY | 2 cut(s) | 107, 148 |
| XmnI | GAANNNNTTC | 1 cut(s) | 107 |
| XspI | CTAG | 1 cut(s) | 171 |