Rmu_sc0006577.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006577.1
OG0000204
Physical Location & Seq
Reverse (-)
63522 .. 64304
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006577.1_g000010.1.cds

Sequence Viewer

Length: 342 bp
atggtattattcacttggtcaacatgtgatggaaggtttgatgtcagtgggggatttgtgtttcgcaatgctgaaggctttcctgttttagtggcttatacttctcttccgtctgttgacatcttaatggcggagagtctctcccttagagctgctttacatgcagctttgatccatgattttcagtctttggacattgaaggcgactcaaaacttcttattgatgctttgacagacaaaaatcaaatcccctggcgcattaaactgctcatccatgacatcaagttgcccagtttggacacaacactcgccctcaggcgtggtctaatgctctcccattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.57

Weight (kDa)

5.69

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AclWI GGATC 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 2 cut(s) 152, 167
AluI AGCT 2 cut(s) 152, 167
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 152, 164
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 258
AxyI CCTNAGG 1 cut(s) 314
BbvI GCAGC 2 cut(s) 139, 176
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 2 cut(s) 153, 165
BlsI GCNGC 2 cut(s) 154, 166
Bme1390I CCNGG 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 253
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BsaJI CCNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 291
Bse21I CCTNAGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 2 cut(s) 139, 176
BsmAI GTCTC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 171
BspACI CCGC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 327
BspPI GGATC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 146, 314
BstF5I GGATG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 2 cut(s) 27, 164
BstSCI CCNGG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 139, 176
Bsu36I CCTNAGG 1 cut(s) 314
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 52
CfoI GCGC 1 cut(s) 258
CviAII CATG 4 cut(s) 24, 161, 176, 275
CviJI RGCY 4 cut(s) 78, 95, 152, 167
CviKI_1 RGCY 4 cut(s) 78, 95, 152, 167
DdeI CTNAG 2 cut(s) 146, 314
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 251
FaeI CATG 4 cut(s) 27, 164, 179, 278
FaiI YATR 5 cut(s) 25, 99, 162, 177, 276
FatI CATG 4 cut(s) 23, 160, 175, 274
Fnu4HI GCNGC 2 cut(s) 153, 165
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 153, 165
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 153, 165
HhaI GCGC 1 cut(s) 258
Hin1II CATG 4 cut(s) 27, 164, 179, 278
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HincII GTYRAC 2 cut(s) 21, 118
HindII GTYRAC 2 cut(s) 21, 118
HinfI GANTC 2 cut(s) 136, 206
Hpy166II GTNNAC 2 cut(s) 21, 118
Hpy8I GTNNAC 2 cut(s) 21, 118
HpyAV CCTTC 3 cut(s) 27, 68, 194
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 146, 314
Hsp92II CATG 4 cut(s) 27, 164, 179, 278
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 171
LpnPI CCDG 5 cut(s) 96, 238, 265, 301, 304
Lsp1109I GCAGC 2 cut(s) 139, 176
LweI GCATC 1 cut(s) 214
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 1 cut(s) 98
MlyI GAGTC 2 cut(s) 145, 200
MnlI CCTC 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 125, 261
MslI CAYNNNNRTG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 171
NlaIII CATG 4 cut(s) 27, 164, 179, 278
NspI RCATGY 2 cut(s) 27, 164
PciI ACATGT 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 2 cut(s) 154, 166
PleI GAGTC 2 cut(s) 144, 200
PpsI GAGTC 2 cut(s) 144, 200
PscI ACATGT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 2 cut(s) 125, 261
SatI GCNGC 2 cut(s) 153, 165
Sau3AI GATC 1 cut(s) 171
SchI GAGTC 2 cut(s) 145, 200
ScrFI CCNGG 1 cut(s) 253
SetI ASST 3 cut(s) 38, 154, 169
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 125
SsiI CCGC 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 251
Tru1I TTAA 2 cut(s) 125, 261
Tru9I TTAA 2 cut(s) 125, 261
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 152, 164
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 52
XceI RCATGY 2 cut(s) 27, 164
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.