Rh5BG248000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000204
Physical Location & Seq
Reverse (-)
30325140 .. 30363854
38715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG248000.1

Sequence Viewer

Length: 354 bp
ATGCCAACTCAGCTTGATGAGACCCATTCTAATTTTCATGGTTCTATTCAACCAACCTGGCGTATCAAAAACATTCCCAAAGACATCTTGTGTCTATCTAATCAATTTCAGAATTTCAGCCTAAATCATATAATTAACAAAGAAGCAAATTTCTTAGTCGATGTTGTTGCCAACACAGAAGACAATCCTTCAGCTCAAGTCATCATTACACGACATGAACTTGACGTCAAGCAGTTGGAGATAACCCTTTTGGTTAAAGACATGAAAATCTCCCTTTACCACGTGCTAAAAGCATCTCAGAAACCAGAGAAAGCAGCTGATTTCAGAAACCATTACCAGAAACCCGGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.45

Weight (kDa)

7.01

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
AcsI RAATTY 2 cut(s) 112, 148
AcuI CTGAAG 1 cut(s) 174
AcvI CACGTG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 225
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 4 cut(s) 13, 194, 317, 351
AluI AGCT 4 cut(s) 13, 194, 317, 351
Alw26I GTCTC 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 2 cut(s) 112, 148
AsuC2I CCSGG 2 cut(s) 345, 346
AvaI CYCGRG 1 cut(s) 344
BbrPI CACGTG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 2 cut(s) 345, 346
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 58, 345, 346
BmeT110I CYCGRG 1 cut(s) 344
BmrFI CCNGG 3 cut(s) 58, 345, 346
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 180
BpuMI CCSGG 2 cut(s) 345, 346
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 344
BseMII CTCAG 2 cut(s) 23, 311
BseXI GCAGC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 22, 310
BspTNI GGTCTC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 344
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 283
BstDEI CTNAG 3 cut(s) 9, 154, 297
BstMAI GTCTC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 56, 343, 344
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 186
Cfr9I CCCGGG 1 cut(s) 344
CviAII CATG 3 cut(s) 38, 215, 262
CviJI RGCY 5 cut(s) 13, 120, 194, 317, 351
CviKI_1 RGCY 5 cut(s) 13, 120, 194, 317, 351
DdeI CTNAG 3 cut(s) 9, 154, 297
Eco31I GGTCTC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 174
Eco72I CACGTG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 41, 218, 265
FaiI YATR 5 cut(s) 39, 129, 131, 216, 263
FatI CATG 3 cut(s) 37, 214, 261
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
HapII CCGG 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 3 cut(s) 41, 218, 265
HpaII CCGG 1 cut(s) 345
Hpy188I TCNGA 3 cut(s) 111, 300, 326
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 2 cut(s) 225, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 3 cut(s) 9, 154, 297
HpySE526I ACGT 2 cut(s) 225, 282
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 3 cut(s) 41, 218, 265
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 4 cut(s) 43, 70, 318, 350
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 302
MaeII ACGT 2 cut(s) 225, 282
MboII GAAGA 1 cut(s) 191
MluCI AATT 5 cut(s) 31, 104, 112, 132, 148
MmeI TCCRAC 1 cut(s) 216
MseI TTAA 2 cut(s) 135, 255
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 3 cut(s) 58, 345, 346
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 2 cut(s) 345, 346
NlaIII CATG 3 cut(s) 41, 218, 265
PkrI GCNGC 1 cut(s) 316
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 56
PspCI CACGTG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 135, 255
SatI GCNGC 1 cut(s) 315
ScrFI CCNGG 3 cut(s) 58, 345, 346
SetI ASST 7 cut(s) 15, 59, 196, 228, 285, 319, 353
SfaNI GCATC 1 cut(s) 302
SmaI CCCGGG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 5 cut(s) 31, 104, 112, 132, 148
StyD4I CCNGG 3 cut(s) 56, 343, 344
TaiI ACGT 2 cut(s) 228, 285
TaqI TCGA 1 cut(s) 159
TasI AATT 5 cut(s) 31, 104, 112, 132, 148
Tru1I TTAA 2 cut(s) 135, 255
Tru9I TTAA 2 cut(s) 135, 255
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 26, 231, 278
TspMI CCCGGG 1 cut(s) 344
XapI RAATTY 2 cut(s) 112, 148
XmaI CCCGGG 1 cut(s) 344
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.