AT4G03292

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000204
Physical Location & Seq
Reverse (-)
1444469 .. 1445220
752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03292.1

Sequence Viewer

Length: 549 bp
ATGAGCCCTAGGAAAATACAAATGAGAATGCTGCACCAAGTGATATACAACCCTCAATACGAAATCGAAGCAGTCAGTTGGAACCTCCCCCTGTTGGCTGGGTTAAATGTAACTTCGATAGTGGGTTTATGCAAATGTAACTTCGATAGTGGGTTTATGCAAGGAAGTCCTTATACACGTTCCGGTTGGATAATACGAGAGAGTAACGGCCATACAATCCTATGTGGAAGTGCGAAACTACATCCATCAACAAGCTCACTACACGCGGAGGTTCTCGGGTTTCTCCATGCCTTACAAGTGATATGGATTCACGGATTGCGTTATGTTTGGTTCGAAACCGATAACAGAGACCTTGTAACGTTACTCAACAATGACGAGGATCATCGCTTGCTTGGACCTCTTCTTTGCGATATACGTTATTGGATGCTAAAGCTACCCTACTGCTCAATCGACTTTGTCAATCGGGAGAGAAACTCTGCAGCTGATACAAGCTCACTACACGCCGGTGTCTTGTTAATCAGAATGATAAAGCCCCAAATTTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_3 zf-RVT

Protein Analysis

182

Amino Acids

20.88

Weight (kDa)

7.72

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 47 - 164 1.1e-31 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 266
AciI CCGC 1 cut(s) 266
AclI AACGTT 1 cut(s) 359
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 537
AdeI CACNNNGTG 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 94, 540
AflIII ACRYGT 1 cut(s) 176
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 4 cut(s) 255, 433, 482, 492
AluI AGCT 4 cut(s) 255, 433, 482, 492
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 31, 479
ApoI RAATTY 1 cut(s) 537
ArsI GACNNNNNNTTYG 2 cut(s) 387, 419
AspA2I CCTAGG 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 333
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 395
AvrII CCTAGG 1 cut(s) 8
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BbvI GCAGC 2 cut(s) 18, 491
BccI CCATC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 477
BisI GCNGC 2 cut(s) 32, 480
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 2 cut(s) 33, 481
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 458, 490
Bpu14I TTCGAA 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 540
Bse118I RCCGGY 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 241, 429
BseLI CCNNNNNNNGG 2 cut(s) 94, 540
BseXI GCAGC 2 cut(s) 18, 491
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 2 cut(s) 183, 504
BslI CCNNNNNNNGG 2 cut(s) 94, 540
BsmAI GTCTC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 379
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 83
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 389
BstF5I GGATG 2 cut(s) 241, 429
BstFNI CGCG 1 cut(s) 266
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 18, 491
BsuRI GGCC 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 2 cut(s) 241, 429
Cac8I GCNNGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 395
CviAII CATG 1 cut(s) 287
CviJI RGCY 8 cut(s) 6, 98, 210, 255, 433, 482, 492, 532
CviKI_1 RGCY 8 cut(s) 6, 98, 210, 255, 433, 482, 492, 532
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
DraIII CACNNNGTG 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 1 cut(s) 290
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 2 cut(s) 32, 480
FokI GGATG 2 cut(s) 228, 436
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 32, 480
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 32, 480
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 183, 504
Hin1II CATG 1 cut(s) 290
HinfI GANTC 1 cut(s) 307
HpaII CCGG 2 cut(s) 183, 504
Hpy188I TCNGA 2 cut(s) 521, 548
Hpy188III TCNNGA 1 cut(s) 464
HpyCH4IV ACGT 3 cut(s) 178, 359, 415
HpyCH4V TGCA 4 cut(s) 34, 132, 160, 479
HpySE526I ACGT 3 cut(s) 178, 359, 415
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 1 cut(s) 379
LpnPI CCDG 4 cut(s) 84, 104, 196, 517
Lsp1109I GCAGC 2 cut(s) 18, 491
LweI GCATC 1 cut(s) 414
MaeI CTAG 1 cut(s) 9
MaeII ACGT 3 cut(s) 178, 359, 415
MaeIII GTNAC 5 cut(s) 109, 137, 203, 355, 360
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 1 cut(s) 392
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 537
MmeI TCCRAC 2 cut(s) 59, 167
MnlI CCTC 5 cut(s) 63, 95, 262, 370, 408
MseI TTAA 2 cut(s) 104, 515
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 2 cut(s) 183, 504
Mva1269I GAATGC 1 cut(s) 33
MvnI CGCG 1 cut(s) 266
NdeII GATC 1 cut(s) 379
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 83
NspV TTCGAA 1 cut(s) 333
OliI CACNNNNGTG 1 cut(s) 504
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 307
PflFI GACNNNGTC 1 cut(s) 455
PkrI GCNGC 2 cut(s) 33, 481
Psp1406I AACGTT 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 395
PstI CTGCAG 1 cut(s) 481
PsyI GACNNNGTC 1 cut(s) 455
PvuII CAGCTG 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 2 cut(s) 104, 515
SatI GCNGC 2 cut(s) 32, 480
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 414
SfcI CTRYAG 1 cut(s) 477
SfuI TTCGAA 1 cut(s) 333
SgrAI CRCCGGYG 1 cut(s) 503
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 1 cut(s) 537
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 3 cut(s) 181, 362, 418
TaqI TCGA 5 cut(s) 66, 116, 144, 333, 450
TasI AATT 1 cut(s) 537
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 104, 515
Tru9I TTAA 2 cut(s) 104, 515
TseI GCWGC 2 cut(s) 31, 479
TspGWI ACGGA 1 cut(s) 327
Tth111I GACNNNGTC 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 1 cut(s) 537
XmaJI CCTAGG 1 cut(s) 8
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.