Rh7AG409500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000204
Physical Location & Seq
Forward (+)
54603803 .. 54624731
20929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG409500.1

Sequence Viewer

Length: 525 bp
ATGCCTTGGGCCCAGTTTGTAGCTTACTTCTCCCTTTCAAACAATGCCCTTTTACCCAAGAAGTTTGGTGAGGCACCCCACATTGCCCAACCCTGCTCAACTTCTTCTCACCCCTCAAGACCCGGGAATCAACTAAAAATAAAATGGGAGCCTCCTCCCTTGAATAGTGTGAAGCTTAACTTTGATGGTTCAATTAGACAAGGCCAAGATGCGACTGCCTCCAGATTTGTAATTAGAGATGCAGAAGGATATGTGCTAATTGCTAGTGCCAAACCTATCAGTTATAGTTATGTTTTGCAAGCTGAAGAGTCAGGCTTAAGAGCTGCAATTCAAGTAGGCTACAATGAACTTCTCATTGGAGCGGCTAGTGTTGGTGTCTCTGTTCCCGATCTGGTGTTTGGAAAGGCCAATGTTGGTGATTGGGTTACTGATTGGATGACCGATCCAAGCCAGAATGCTCCAGGGATGATGGCTGCCAGGTCTGACATTGGTGTCGGTGCAGAGTGCGGCAAAGATTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

174

Amino Acids

18.69

Weight (kDa)

5.63

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 362
AciI CCGC 2 cut(s) 362, 507
AclWI GGATC 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 324
AflII CTTAAG 1 cut(s) 316
AgsI TTSAA 4 cut(s) 39, 163, 192, 332
AjnI CCWGG 2 cut(s) 460, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 4 cut(s) 23, 175, 302, 323
AluI AGCT 4 cut(s) 23, 175, 302, 323
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 3 cut(s) 9, 202, 405
ApaI GGGCCC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 323, 473
AspS9I GGNCC 2 cut(s) 9, 10
AsuC2I CCSGG 2 cut(s) 123, 124
AsuHPI GGTGA 3 cut(s) 80, 101, 428
AvaI CYCGRG 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 310, 460
BccI CCATC 2 cut(s) 179, 463
BciT130I CCWGG 2 cut(s) 462, 478
BcnI CCSGG 2 cut(s) 123, 124
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 264, 366
BfrI CTTAAG 1 cut(s) 316
BisI GCNGC 4 cut(s) 324, 363, 474, 508
BlsI GCNGC 4 cut(s) 325, 364, 475, 509
Bme1390I CCNGG 4 cut(s) 123, 124, 462, 478
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 9, 10
BmiI GGNNCC 3 cut(s) 11, 75, 150
BmrFI CCNGG 4 cut(s) 123, 124, 462, 478
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 2 cut(s) 199, 229
BmuI ACTGGG 1 cut(s) 7
BpmI CTGGAG 2 cut(s) 205, 444
BpuEI CTTGAG 1 cut(s) 100
BpuMI CCSGG 2 cut(s) 123, 124
BsaJI CCNNGG 3 cut(s) 5, 122, 461
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 2 cut(s) 462, 478
BseDI CCNNGG 3 cut(s) 5, 122, 461
BseGI GGATG 2 cut(s) 441, 471
BseMI GCAATG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 2 cut(s) 310, 460
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 3 cut(s) 11, 204, 407
BshNI GGYRCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 3 cut(s) 11, 204, 407
BsoBI CYCGRG 1 cut(s) 122
Bsp120I GGGCCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 388, 442
BspACI CCGC 2 cut(s) 362, 507
BspANI GGCC 3 cut(s) 11, 204, 407
BspLI GGNNCC 3 cut(s) 11, 75, 150
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 5, 122, 461
BssMI GATC 2 cut(s) 388, 442
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 462, 478
Bst6I CTCTTC 1 cut(s) 300
BstAFI CTTAAG 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 300
BstF5I GGATG 2 cut(s) 441, 471
BstKTI GATC 2 cut(s) 391, 445
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 388, 442
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstNI CCWGG 2 cut(s) 462, 478
BstSCI CCNGG 4 cut(s) 121, 122, 460, 476
BstSLI GKGCMC 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 310, 460
BsuRI GGCC 3 cut(s) 11, 204, 407
BtsCI GGATG 2 cut(s) 441, 471
Cac8I GCNNGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 9, 10
Cfr9I CCCGGG 1 cut(s) 122
DpnI GATC 2 cut(s) 390, 444
DpnII GATC 2 cut(s) 388, 442
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 460, 476
EcoT14I CCWWGG 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 5
FaiI YATR 3 cut(s) 252, 285, 291
FalI AAGNNNNNCTT 2 cut(s) 164, 196
Fnu4HI GCNGC 4 cut(s) 324, 363, 474, 508
FokI GGATG 2 cut(s) 448, 478
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 4 cut(s) 324, 363, 474, 508
FspBI CTAG 2 cut(s) 264, 366
GluI GCNGC 4 cut(s) 324, 363, 474, 508
GsuI CTGGAG 2 cut(s) 205, 444
HaeIII GGCC 3 cut(s) 11, 204, 407
HapII CCGG 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 127, 308
HpaII CCGG 1 cut(s) 123
HphI GGTGA 3 cut(s) 80, 101, 428
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 3 cut(s) 117, 222, 386
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 242, 298, 326, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
Kzo9I GATC 2 cut(s) 388, 442
LmnI GCTCC 3 cut(s) 148, 359, 463
Lsp1109I GCAGC 2 cut(s) 310, 460
LweI GCATC 2 cut(s) 199, 229
MaeI CTAG 2 cut(s) 264, 366
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 390, 444
MbiI CCGCTC 1 cut(s) 362
MboI GATC 2 cut(s) 388, 442
MboII GAAGA 2 cut(s) 96, 317
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 4 cut(s) 192, 231, 258, 327
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 5 cut(s) 64, 124, 162, 165, 229
MseI TTAA 2 cut(s) 177, 317
MspCI CTTAAG 1 cut(s) 316
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 4 cut(s) 123, 124, 462, 478
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 2 cut(s) 462, 478
MwoI GCNNNNNNNGC 1 cut(s) 516
NciI CCSGG 2 cut(s) 123, 124
NdeII GATC 2 cut(s) 388, 442
NlaIV GGNNCC 3 cut(s) 11, 75, 150
PctI GAATGC 1 cut(s) 460
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 4 cut(s) 325, 364, 475, 509
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 460, 476
PspGI CCWGG 2 cut(s) 460, 476
PspN4I GGNNCC 3 cut(s) 11, 75, 150
PspOMI GGGCCC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 9, 10
SaqAI TTAA 2 cut(s) 177, 317
SatI GCNGC 4 cut(s) 324, 363, 474, 508
Sau3AI GATC 2 cut(s) 388, 442
Sau96I GGNCC 2 cut(s) 9, 10
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 4 cut(s) 123, 124, 462, 478
SduI GDGCHC 1 cut(s) 13
SetI ASST 6 cut(s) 25, 177, 277, 304, 325, 482
SfaNI GCATC 2 cut(s) 199, 229
SmaI CCCGGG 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 115, 316
SmoI CTYRAG 2 cut(s) 115, 316
Sse9I AATT 4 cut(s) 192, 231, 258, 327
SsiI CCGC 2 cut(s) 362, 507
SspMI CTAG 2 cut(s) 264, 366
StyD4I CCNGG 4 cut(s) 121, 122, 460, 476
StyI CCWWGG 1 cut(s) 5
TaqII GACCGA 1 cut(s) 455
TasI AATT 4 cut(s) 192, 231, 258, 327
TauI GCSGC 2 cut(s) 365, 510
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 2 cut(s) 177, 317
Tru9I TTAA 2 cut(s) 177, 317
TseI GCWGC 2 cut(s) 323, 473
TspDTI ATGAA 1 cut(s) 360
TspMI CCCGGG 1 cut(s) 122
Vha464I CTTAAG 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 122
XspI CTAG 2 cut(s) 264, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.