Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 26 - 110 | 9.5e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 14 |
| AciI | CCGC | 1 cut(s) | 12 |
| AclWI | GGATC | 1 cut(s) | 186 |
| AcuI | CTGAAG | 1 cut(s) | 324 |
| AgsI | TTSAA | 3 cut(s) | 266, 272, 365 |
| AluBI | AGCT | 3 cut(s) | 59, 158, 215 |
| AluI | AGCT | 3 cut(s) | 59, 158, 215 |
| Alw21I | GWGCWC | 1 cut(s) | 291 |
| AlwI | GGATC | 1 cut(s) | 186 |
| ApeKI | GCWGC | 1 cut(s) | 56 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 37 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| BanII | GRGCYC | 1 cut(s) | 167 |
| Bbv12I | GWGCWC | 1 cut(s) | 291 |
| BbvI | GCAGC | 1 cut(s) | 68 |
| BceAI | ACGGC | 1 cut(s) | 160 |
| BfaI | CTAG | 1 cut(s) | 330 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 391 |
| BisI | GCNGC | 1 cut(s) | 57 |
| BlsI | GCNGC | 1 cut(s) | 58 |
| Bsa29I | ATCGAT | 1 cut(s) | 170 |
| Bse1I | ACTGG | 1 cut(s) | 264 |
| Bse3DI | GCAATG | 1 cut(s) | 234 |
| BseCI | ATCGAT | 1 cut(s) | 170 |
| BseGI | GGATG | 1 cut(s) | 51 |
| BseMI | GCAATG | 1 cut(s) | 234 |
| BseNI | ACTGG | 1 cut(s) | 264 |
| BseXI | GCAGC | 1 cut(s) | 68 |
| Bsh1236I | CGCG | 1 cut(s) | 14 |
| BshVI | ATCGAT | 1 cut(s) | 170 |
| BsiHKAI | GWGCWC | 1 cut(s) | 291 |
| Bsp1286I | GDGCHC | 2 cut(s) | 167, 291 |
| Bsp143I | GATC | 3 cut(s) | 136, 178, 300 |
| BspACI | CCGC | 1 cut(s) | 12 |
| BspDI | ATCGAT | 1 cut(s) | 170 |
| BspFNI | CGCG | 1 cut(s) | 14 |
| BspPI | GGATC | 1 cut(s) | 186 |
| BsrDI | GCAATG | 1 cut(s) | 234 |
| BsrI | ACTGG | 1 cut(s) | 264 |
| BssMI | GATC | 3 cut(s) | 136, 178, 300 |
| Bst6I | CTCTTC | 1 cut(s) | 343 |
| BstF5I | GGATG | 1 cut(s) | 51 |
| BstFNI | CGCG | 1 cut(s) | 14 |
| BstKTI | GATC | 3 cut(s) | 139, 181, 303 |
| BstMBI | GATC | 3 cut(s) | 136, 178, 300 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 391 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstUI | CGCG | 1 cut(s) | 14 |
| BstV1I | GCAGC | 1 cut(s) | 68 |
| Bsu15I | ATCGAT | 1 cut(s) | 170 |
| BsuTUI | ATCGAT | 1 cut(s) | 170 |
| BtsCI | GGATG | 1 cut(s) | 51 |
| ClaI | ATCGAT | 1 cut(s) | 170 |
| CseI | GACGC | 2 cut(s) | 92, 209 |
| CviAII | CATG | 4 cut(s) | 53, 115, 182, 375 |
| CviJI | RGCY | 6 cut(s) | 59, 158, 165, 215, 385, 394 |
| CviKI_1 | RGCY | 6 cut(s) | 59, 158, 165, 215, 385, 394 |
| DpnI | GATC | 3 cut(s) | 138, 180, 302 |
| DpnII | GATC | 3 cut(s) | 136, 178, 300 |
| Eam1104I | CTCTTC | 1 cut(s) | 343 |
| EarI | CTCTTC | 1 cut(s) | 343 |
| Eco24I | GRGCYC | 1 cut(s) | 167 |
| Eco57I | CTGAAG | 1 cut(s) | 324 |
| EcoT38I | GRGCYC | 1 cut(s) | 167 |
| FaeI | CATG | 4 cut(s) | 56, 118, 185, 378 |
| FaiI | YATR | 4 cut(s) | 54, 116, 183, 376 |
| FatI | CATG | 4 cut(s) | 52, 114, 181, 374 |
| FauI | CCCGC | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 1 cut(s) | 57 |
| FokI | GGATG | 1 cut(s) | 58 |
| FriOI | GRGCYC | 1 cut(s) | 167 |
| Fsp4HI | GCNGC | 1 cut(s) | 57 |
| FspBI | CTAG | 1 cut(s) | 330 |
| GluI | GCNGC | 1 cut(s) | 57 |
| HgaI | GACGC | 2 cut(s) | 92, 209 |
| Hin1II | CATG | 4 cut(s) | 56, 118, 185, 378 |
| HindIII | AAGCTT | 1 cut(s) | 156 |
| HinfI | GANTC | 1 cut(s) | 371 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 1 cut(s) | 348 |
| Hpy188I | TCNGA | 1 cut(s) | 343 |
| Hpy188III | TCNNGA | 3 cut(s) | 95, 241, 426 |
| Hpy8I | GTNNAC | 1 cut(s) | 348 |
| HpyAV | CCTTC | 2 cut(s) | 266, 413 |
| HpyCH4V | TGCA | 4 cut(s) | 56, 75, 232, 421 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 391 |
| Hsp92II | CATG | 4 cut(s) | 56, 118, 185, 378 |
| Kzo9I | GATC | 3 cut(s) | 136, 178, 300 |
| LmnI | GCTCC | 1 cut(s) | 64 |
| LpnPI | CCDG | 4 cut(s) | 72, 80, 226, 245 |
| Lsp1109I | GCAGC | 1 cut(s) | 68 |
| MaeI | CTAG | 1 cut(s) | 330 |
| MaeIII | GTNAC | 1 cut(s) | 251 |
| MalI | GATC | 3 cut(s) | 138, 180, 302 |
| MboI | GATC | 3 cut(s) | 136, 178, 300 |
| MboII | GAAGA | 2 cut(s) | 306, 330 |
| MhlI | GDGCHC | 2 cut(s) | 167, 291 |
| MluCI | AATT | 1 cut(s) | 266 |
| MmeI | TCCRAC | 1 cut(s) | 104 |
| MnlI | CCTC | 2 cut(s) | 242, 277 |
| MroXI | GAANNNNTTC | 1 cut(s) | 37 |
| MvnI | CGCG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 391 |
| NdeII | GATC | 3 cut(s) | 136, 178, 300 |
| NlaIII | CATG | 4 cut(s) | 56, 118, 185, 378 |
| NspI | RCATGY | 1 cut(s) | 56 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 11 |
| PdmI | GAANNNNTTC | 1 cut(s) | 37 |
| PfeI | GAWTC | 1 cut(s) | 371 |
| PkrI | GCNGC | 1 cut(s) | 58 |
| SatI | GCNGC | 1 cut(s) | 57 |
| Sau3AI | GATC | 3 cut(s) | 136, 178, 300 |
| SduI | GDGCHC | 2 cut(s) | 167, 291 |
| SetI | ASST | 7 cut(s) | 61, 160, 217, 253, 277, 288, 405 |
| Sse9I | AATT | 1 cut(s) | 266 |
| SsiI | CCGC | 1 cut(s) | 12 |
| SspMI | CTAG | 1 cut(s) | 330 |
| TaqI | TCGA | 1 cut(s) | 170 |
| TasI | AATT | 1 cut(s) | 266 |
| TfiI | GAWTC | 1 cut(s) | 371 |
| TseI | GCWGC | 1 cut(s) | 56 |
| TspDTI | ATGAA | 2 cut(s) | 62, 363 |
| XceI | RCATGY | 1 cut(s) | 56 |
| XmnI | GAANNNNTTC | 1 cut(s) | 37 |
| XspI | CTAG | 1 cut(s) | 330 |