RLG00000032722

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000204
Physical Location & Seq
Forward (+)
18236158 .. 18236906
749 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032722

Sequence Viewer

Length: 339 bp
ATGGGCTATCCCTTGTTTGTTGTTCTAGAGAAAATTGGTGAAGCTAGTGTCTTGATTGCTAAAGCAACTGCTCTTAGAGAAGGTCTCAATGCTGTAAAATTTTACAACTACTCTATAGTGTGGGTGGAAGGAGATTCCAAGCTTCTAATCGATTGCATTATAGGGAAGTTTTCAGTTCTTTGGCATATCAAGATCCTGGTGGATGATATTAAAAGGATTGTAGTCTCTTTTGCTTTCATCAGATTTAGGCATATCTTTCATGAAGTTAATTTTGTAGGAGAGTTAGCTACTATTGATATTGATCTTAAAGATAGAAATGTTGCGCGTTGTTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.78

Weight (kDa)

7.8

Isoelectric Point (pI)

24.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 12 - 92 1.1e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 325
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 98
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 3 cut(s) 44, 142, 287
AluI AGCT 3 cut(s) 44, 142, 287
Alw26I GTCTC 2 cut(s) 89, 229
AlwI GGATC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 98
AspLEI GCGC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 89, 229
BfaI CTAG 2 cut(s) 26, 45
BfmI CTRYAG 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 69, 101
Bsa29I ATCGAT 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 150
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 325
BshVI ATCGAT 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 89, 229
Bso31I GGTCTC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 192, 301
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 1 cut(s) 325
BspHI TCATGA 1 cut(s) 259
BspPI GGATC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 89
BssMI GATC 2 cut(s) 192, 301
Bst2UI CCWGG 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 325
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 2 cut(s) 195, 304
BstMAI GTCTC 2 cut(s) 89, 229
BstMBI GATC 2 cut(s) 192, 301
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 150
BsuTUI ATCGAT 1 cut(s) 150
BtsCI GGATG 1 cut(s) 208
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 150
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 6, 44, 142, 287
CviKI_1 RGCY 4 cut(s) 6, 44, 142, 287
DdeI CTNAG 1 cut(s) 74
DpnI GATC 2 cut(s) 194, 303
DpnII GATC 2 cut(s) 192, 301
Eco31I GGTCTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 263
FaiI YATR 6 cut(s) 116, 161, 186, 252, 261, 337
FatI CATG 1 cut(s) 259
FokI GGATG 1 cut(s) 215
FspBI CTAG 2 cut(s) 26, 45
GlaI GCGC 1 cut(s) 324
HhaI GCGC 1 cut(s) 325
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 4 cut(s) 26, 52, 190, 260
HpyAV CCTTC 2 cut(s) 74, 122
HpyCH4V TGCA 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 2 cut(s) 192, 301
LpnPI CCDG 2 cut(s) 182, 209
MaeI CTAG 2 cut(s) 26, 45
MalI GATC 2 cut(s) 194, 303
MboI GATC 2 cut(s) 192, 301
MflI RGATCY 1 cut(s) 192
MluCI AATT 3 cut(s) 33, 98, 268
MseI TTAA 3 cut(s) 210, 267, 306
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 325
NdeII GATC 2 cut(s) 192, 301
NlaIII CATG 1 cut(s) 263
PagI TCATGA 1 cut(s) 259
PfeI GAWTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PsuI RGATCY 1 cut(s) 192
SaqAI TTAA 3 cut(s) 210, 267, 306
Sau3AI GATC 2 cut(s) 192, 301
ScrFI CCNGG 1 cut(s) 197
SetI ASST 4 cut(s) 46, 85, 144, 289
SfcI CTRYAG 1 cut(s) 114
SgeI CNNG 9 cut(s) 25, 38, 57, 64, 151, 202, 208, 209, 272
Sse9I AATT 3 cut(s) 33, 98, 268
SspMI CTAG 2 cut(s) 26, 45
StyD4I CCNGG 1 cut(s) 195
TaqI TCGA 1 cut(s) 150
TasI AATT 3 cut(s) 33, 98, 268
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 3 cut(s) 210, 267, 306
Tru9I TTAA 3 cut(s) 210, 267, 306
TspDTI ATGAA 3 cut(s) 226, 248, 276
XapI RAATTY 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 25
XspI CTAG 2 cut(s) 26, 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.