Rmu_sc0002209.1_g000015

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002209.1
OG0000204
Physical Location & Seq
Forward (+)
52480 .. 54682
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002209.1_g000015.1.cds

Sequence Viewer

Length: 450 bp
atggggaggatcggccgaggtgatgccggaaaactggaattccggccgggtcaccgatcggagtctgggtggcttcgatccggctttcggggcagcggcgggccaaagagataccggaggacggctcttcgtggagctgcgatcacggtgttgtccgggtcgtggccggaggacgccggaggaggtagaactcgtcgggtcgggtcgacgggtcggcaggcatggagaggatccttgatcgctgatattagttacctggctgcgaaatttgatgttgtttccttctctcatgtctttcgtgaggccaatttcgttgcggatgttatcacctcaatgggtcatgatctttccgatcccaagatttggttcaattccattccgactgtggcctcgtccacgttgcttctggattctgctagccttggatgtcctaggggtttcttgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

149

Amino Acids

16.04

Weight (kDa)

11.0

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 363
AccI GTMKAC 1 cut(s) 206
AciI CCGC 3 cut(s) 96, 99, 317
AclWI GGATC 5 cut(s) 17, 72, 225, 238, 347
AcoI YGGCCR 3 cut(s) 13, 44, 164
AcsI RAATTY 2 cut(s) 38, 266
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 4 cut(s) 87, 121, 162, 363
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 5 cut(s) 17, 72, 225, 238, 347
AoxI GGCC 6 cut(s) 13, 44, 101, 164, 303, 387
ApeKI GCWGC 3 cut(s) 93, 137, 260
ApoI RAATTY 2 cut(s) 38, 266
AspA2I CCTAGG 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 2 cut(s) 48, 157
AsuHPI GGTGA 3 cut(s) 32, 44, 319
AsuNHI GCTAGC 1 cut(s) 416
AvrII CCTAGG 1 cut(s) 431
BamHI GGATCC 1 cut(s) 230
BbvI GCAGC 3 cut(s) 105, 124, 247
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 2 cut(s) 48, 157
BfaI CTAG 2 cut(s) 417, 432
BisI GCNGC 4 cut(s) 94, 97, 138, 261
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 4 cut(s) 95, 98, 139, 262
Bme1390I CCNGG 3 cut(s) 48, 157, 257
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 3 cut(s) 48, 157, 257
BmsI GCATC 1 cut(s) 13
BmtI GCTAGC 1 cut(s) 420
BplI GAGNNNNNCTC 2 cut(s) 109, 141
BpuMI CCSGG 2 cut(s) 48, 157
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 16, 421, 431
BsaWI WCCGGW 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 121, 162, 363
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 3 cut(s) 16, 421, 431
BseGI GGATG 2 cut(s) 325, 431
BseLI CCNNNNNNNGG 4 cut(s) 87, 121, 162, 363
BseNI ACTGG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 195
BseX3I CGGCCG 2 cut(s) 13, 44
BseXI GCAGC 3 cut(s) 105, 124, 247
Bsh1285I CGRYCG 3 cut(s) 16, 47, 59
BshFI GGCC 6 cut(s) 15, 46, 103, 166, 305, 389
BsiEI CGRYCG 3 cut(s) 16, 47, 59
BsiSI CCGG 8 cut(s) 27, 43, 47, 81, 115, 156, 167, 177
BslI CCNNNNNNNGG 4 cut(s) 87, 121, 162, 363
BsnI GGCC 6 cut(s) 15, 46, 103, 166, 305, 389
Bsp143I GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
BspACI CCGC 3 cut(s) 96, 99, 317
BspANI GGCC 6 cut(s) 15, 46, 103, 166, 305, 389
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 5 cut(s) 17, 72, 225, 238, 347
BspQI GCTCTTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 16, 421, 431
BssMI GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 421, 431
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 148, 385
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 101, 219, 418
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 2 cut(s) 325, 431
BstKTI GATC 8 cut(s) 12, 59, 80, 144, 233, 240, 346, 355
BstMBI GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
BstMCI CGRYCG 3 cut(s) 16, 47, 59
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 46, 155, 255
BstV1I GCAGC 3 cut(s) 105, 124, 247
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BstZI CGGCCG 2 cut(s) 13, 44
BsuRI GGCC 6 cut(s) 15, 46, 103, 166, 305, 389
BtsCI GGATG 2 cut(s) 325, 431
Cac8I GCNNGC 3 cut(s) 101, 219, 418
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 101
CseI GACGC 1 cut(s) 182
CviAII CATG 3 cut(s) 222, 290, 341
DpnI GATC 8 cut(s) 11, 58, 79, 143, 232, 239, 345, 354
DpnII GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
EaeI YGGCCR 3 cut(s) 13, 44, 164
EagI CGGCCG 2 cut(s) 13, 44
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
EclXI CGGCCG 2 cut(s) 13, 44
Eco130I CCWWGG 2 cut(s) 421, 431
Eco52I CGGCCG 2 cut(s) 13, 44
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 421, 431
ErhI CCWWGG 2 cut(s) 421, 431
FaeI CATG 3 cut(s) 225, 293, 344
FaiI YATR 3 cut(s) 223, 291, 342
FatI CATG 3 cut(s) 221, 289, 340
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 4 cut(s) 94, 97, 138, 261
FokI GGATG 2 cut(s) 332, 438
Fsp4HI GCNGC 4 cut(s) 94, 97, 138, 261
FspBI CTAG 2 cut(s) 417, 432
GluI GCNGC 4 cut(s) 94, 97, 138, 261
HaeIII GGCC 6 cut(s) 15, 46, 103, 166, 305, 389
HapII CCGG 8 cut(s) 27, 43, 47, 81, 115, 156, 167, 177
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 225, 293, 344
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 62, 410
HpaII CCGG 8 cut(s) 27, 43, 47, 81, 115, 156, 167, 177
HphI GGTGA 3 cut(s) 32, 44, 319
Hpy166II GTNNAC 2 cut(s) 207, 396
Hpy188I TCNGA 3 cut(s) 61, 352, 381
Hpy188III TCNNGA 3 cut(s) 299, 341, 407
Hpy8I GTNNAC 2 cut(s) 207, 396
Hpy99I CGWCG 2 cut(s) 198, 211
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 148, 385
HpyCH4IV ACGT 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 398
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 225, 293, 344
Kzo9I GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 3 cut(s) 105, 124, 247
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 417, 432
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 50, 251
MalI GATC 8 cut(s) 11, 58, 79, 143, 232, 239, 345, 354
MboI GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 230
MluCI AATT 4 cut(s) 38, 266, 307, 370
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 9 cut(s) 11, 111, 163, 173, 176, 221, 295, 340, 400
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 8 cut(s) 27, 43, 47, 81, 115, 156, 167, 177
MspR9I CCNGG 3 cut(s) 48, 157, 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 90
NciI CCSGG 2 cut(s) 48, 157
NdeII GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 3 cut(s) 225, 293, 344
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 50
PagI TCATGA 1 cut(s) 340
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 363
PkrI GCNGC 4 cut(s) 95, 98, 139, 262
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 255
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 230
PvuI CGATCG 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 332
SalI GTCGAC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 132
SatI GCNGC 4 cut(s) 94, 97, 138, 261
Sau3AI GATC 8 cut(s) 9, 56, 77, 141, 230, 237, 343, 352
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 3 cut(s) 48, 157, 257
SetI ASST 6 cut(s) 22, 139, 187, 258, 332, 401
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 4 cut(s) 38, 266, 307, 370
SsiI CCGC 3 cut(s) 96, 99, 317
SspMI CTAG 2 cut(s) 417, 432
StyD4I CCNGG 3 cut(s) 46, 155, 255
StyI CCWWGG 2 cut(s) 421, 431
TaaI ACNGT 2 cut(s) 148, 385
TaiI ACGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 76, 206
TasI AATT 4 cut(s) 38, 266, 307, 370
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 410
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 3 cut(s) 93, 137, 260
Tsp45I GTSAC 1 cut(s) 50
Van91I CCANNNNNTGG 1 cut(s) 363
XapI RAATTY 2 cut(s) 38, 266
XcmI CCANNNNNNNNNTGG 2 cut(s) 382, 403
XmaJI CCTAGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 2 cut(s) 417, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.