Rmu_sc0000976.1_g000013

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000976.1
OG0000204
Physical Location & Seq
Reverse (-)
72496 .. 75287
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000976.1_g000013.1.cds

Sequence Viewer

Length: 507 bp
atggagagatggagagacgaggctgaagcgcgcgaagggatggagagacgaggcttaagcgcgcgaaagggattgagcgttgctgaagcccttgcttccagagtcctagacactgttaagaaaattatgtcgactcctattccgttctttcaacagcaagatgaaatggtctggggtccttcagttttaaagaatcacagtagtgcaaaaggctttgtttttaagaatgcacaaggtgagcctcttttagcggcggcgaaccaccttggctcatatgatgtccttactactgaggctatggctcttagagcaagcttgcatgctgcttggttgcatggattttcatatattgaagttgacggtgattctaagcttttgattgacagtataactggtcgcattcaaatggcctggagaatcaagcctctggttcaagatattctcaaggtggccacttttctcaactcagtttcttttacgcatgtgaagaggaatcaaatttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

168

Amino Acids

18.75

Weight (kDa)

9.3

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04625 AT1G27220 AT1G27250 AT1G27870 AT1G47497 AT1G47497 AT1G50160 AT1G52990 AT1G52990 AT1G77815 AT2G02650 AT2G04420 AT2G11205 AT2G13980 AT2G33160 AT2G46460 AT3G09510 AT3G23320 AT3G25270 AT3G32130 AT4G03292 AT4G09775 AT5G26617 AT5G44470 AT5G52115 AT5G65005
fragaria_vesca FvH4_1g25222 FvH4_1g28481 FvH4_3g03751 FvH4_3g24081 FvH4_3g35341 FvH4_5g31961 FvH4_6g20891 FvH4_6g23253 FvH4_6g31361 FvH4_6g53051
malus_domestica MD14G1209300.v1.1
prunus_persica Prupe.1G168800_v2.0.a1 Prupe.1G509200_v2.0.a1 Prupe.2G042000_v2.0.a1 Prupe.2G133200_v2.0.a1 Prupe.2G140300_v2.0.a1 Prupe.3G103800_v2.0.a1 Prupe.4G217300_v2.0.a1 Prupe.4G245300_v2.0.a1 Prupe.5G002600_v2.0.a1 Prupe.5G134600_v2.0.a1 Prupe.6G185900_v2.0.a1 Prupe.6G308300_v2.0.a1 Prupe.7G010700_v2.0.a1 Prupe.8G078100_v2.0.a1 Prupe.8G128400_v2.0.a1
pyrus_communis pycom01g14230 pycom03g12410 pycom08g15160 pycom08g21670 pycom10g25730 pycom10g25740 pycom11g15380 pycom14g10440 pycom14g11510 pycom15g31840 pycom16g02370
rosa_chinensis RchiOBHm_Chr4g0440421 RchiOBHm_Chr5g0005841 RchiOBHm_Chr6g0289481 RchiOBHm_Chr7g0218671
rosa_laevigata RLG00000011653 RLG00000031330 RLG00000031331 RLG00000032722
rosa_multiflora Rmu_co8243061.1_g000001 Rmu_sc0000470.1_g000036 Rmu_sc0000581.1_g000008 Rmu_sc0000666.1_g000017 Rmu_sc0000905.1_g000019 Rmu_sc0000976.1_g000013 Rmu_sc0001066.1_g000001 Rmu_sc0001103.1_g000007 Rmu_sc0001180.1_g000001 Rmu_sc0001643.1_g000034 Rmu_sc0001759.1_g000007 Rmu_sc0001850.1_g000051 Rmu_sc0001910.1_g000008 Rmu_sc0001981.1_g000015 Rmu_sc0001981.1_g000029 Rmu_sc0002209.1_g000015 Rmu_sc0002406.1_g000010 Rmu_sc0003743.1_g000002 Rmu_sc0006416.1_g000026 Rmu_sc0006513.1_g000006 Rmu_sc0006577.1_g000010 Rmu_sc0014652.1_g000001 Rmu_sc0016202.1_g000003
rosa_roxburghii Rroxscaffold_1G00001530 Rroxscaffold_1G00047250 Rroxscaffold_5G00340720 Rroxscaffold_7G00171110 Rroxscaffold_7G00177650
rosa_rugosa Rorug01G0044800 Rorug01G0204500 Rorug01G0224700 Rorug01G0267800 Rorug02G0038400 Rorug02G0107100 Rorug02G0180700 Rorug02G0363800 Rorug02G0374300 Rorug02G0491400 Rorug02G0491400 Rorug03G0104200 Rorug03G0109800 Rorug03G0334200 Rorug04G0007100 Rorug04G0061400.1 Rorug04G0080000 Rorug05G0152200 Rorug05G0188800 Rorug05G0234800 Rorug05G0239900 Rorug05G0284800 Rorug06G0044700 Rorug06G0205700 Rorug06G0266900 Rorug06G0440700 Rorug07G0037400 Rorug07G0192100 Rorug07G0196900 Rorug07G0237500 Rorug07G0336400.1 RorugPtG0002500.1
rosa_samantha Rh1BG014800 Rh1CG017500 Rh2CG332500 Rh3BG371800 Rh5AG046000 Rh5AG046100 Rh5BG044700 Rh5BG044800 Rh5BG248000 Rh5CG053600 Rh5CG053700 Rh5DG044500 Rh5DG044600 Rh6AG052800 Rh6AG315400 Rh6DG021400 Rh7AG409500
rosa_wichuraiana Rw3G007750 Rw3G018750 Rw4G008820 Rw5G004630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 131
AccII CGCG 4 cut(s) 31, 33, 62, 64
AciI CCGC 2 cut(s) 251, 254
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 3 cut(s) 45, 105, 165
AdeI CACNNNGTG 1 cut(s) 236
AflII CTTAAG 1 cut(s) 55
AgsI TTSAA 4 cut(s) 152, 353, 404, 434
AjnI CCWGG 1 cut(s) 410
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 2 cut(s) 315, 373
AluI AGCT 2 cut(s) 315, 373
Alw26I GTCTC 2 cut(s) 9, 40
AoxI GGCC 2 cut(s) 408, 450
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 498
AspLEI GCGC 4 cut(s) 31, 33, 62, 64
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 248, 374
AvaII GGWCC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 452
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 3, 34
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 9, 40
BfaI CTAG 1 cut(s) 107
BfrI CTTAAG 1 cut(s) 55
BisI GCNGC 3 cut(s) 252, 255, 324
BlsI GCNGC 3 cut(s) 253, 256, 325
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 412
BpmI CTGGAG 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 282, 480
BseNI ACTGG 1 cut(s) 397
BsePI GCGCGC 2 cut(s) 29, 60
BseXI GCAGC 1 cut(s) 310
Bsh1236I CGCG 4 cut(s) 31, 33, 62, 64
BshFI GGCC 2 cut(s) 410, 452
BsmAI GTCTC 2 cut(s) 9, 40
BsmBI CGTCTC 2 cut(s) 9, 40
BsmI GAATGC 2 cut(s) 232, 399
BsnI GGCC 2 cut(s) 410, 452
BspACI CCGC 2 cut(s) 251, 254
BspANI GGCC 2 cut(s) 410, 452
BspCNI CTCAG 2 cut(s) 283, 479
BspFNI CGCG 4 cut(s) 31, 33, 62, 64
BspLI GGNNCC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 265
BssHII GCGCGC 2 cut(s) 29, 60
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 4 cut(s) 115, 200, 362, 386
Bst6I CTCTTC 1 cut(s) 482
BstAFI CTTAAG 1 cut(s) 55
BstC8I GCNNGC 5 cut(s) 31, 62, 313, 317, 321
BstDEI CTNAG 5 cut(s) 291, 305, 369, 466, 504
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 4 cut(s) 31, 33, 62, 64
BstHHI GCGC 4 cut(s) 31, 33, 62, 64
BstMAI GTCTC 2 cut(s) 9, 40
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 2 cut(s) 323, 485
BstSCI CCNGG 1 cut(s) 410
BstUI CGCG 4 cut(s) 31, 33, 62, 64
BstV1I GCAGC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 410, 452
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 5 cut(s) 31, 62, 313, 317, 321
CfoI GCGC 4 cut(s) 31, 33, 62, 64
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 3 cut(s) 320, 335, 482
DdeI CTNAG 5 cut(s) 291, 305, 369, 466, 504
DraI TTTAAA 1 cut(s) 189
DraIII CACNNNGTG 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 3 cut(s) 45, 105, 165
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
Esp3I CGTCTC 2 cut(s) 9, 40
FaeI CATG 3 cut(s) 323, 338, 485
FatI CATG 3 cut(s) 319, 334, 481
FauNDI CATATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 3 cut(s) 252, 255, 324
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 252, 255, 324
FspBI CTAG 1 cut(s) 107
GlaI GCGC 4 cut(s) 30, 32, 61, 63
GluI GCNGC 3 cut(s) 252, 255, 324
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 2 cut(s) 410, 452
HhaI GCGC 4 cut(s) 31, 33, 62, 64
Hin1II CATG 3 cut(s) 323, 338, 485
Hin6I GCGC 4 cut(s) 29, 31, 60, 62
HinP1I GCGC 4 cut(s) 29, 31, 60, 62
HincII GTYRAC 2 cut(s) 132, 358
HindII GTYRAC 2 cut(s) 132, 358
HindIII AAGCTT 2 cut(s) 313, 371
HinfI GANTC 6 cut(s) 102, 133, 193, 365, 417, 493
HphI GGTGA 2 cut(s) 248, 374
Hpy166II GTNNAC 2 cut(s) 132, 358
Hpy188III TCNNGA 2 cut(s) 99, 434
Hpy8I GTNNAC 2 cut(s) 132, 358
HpyAV CCTTC 2 cut(s) 29, 189
HpyCH4III ACNGT 4 cut(s) 115, 200, 362, 386
HpyCH4V TGCA 4 cut(s) 206, 230, 319, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 5 cut(s) 291, 305, 369, 466, 504
Hsp92II CATG 3 cut(s) 323, 338, 485
HspAI GCGC 4 cut(s) 29, 31, 60, 62
LpnPI CCDG 6 cut(s) 112, 157, 378, 397, 413, 424
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 1 cut(s) 107
MboII GAAGA 1 cut(s) 499
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 2 cut(s) 123, 498
MluNI TGGCCA 1 cut(s) 452
MlyI GAGTC 2 cut(s) 111, 127
MnlI CCTC 6 cut(s) 13, 44, 252, 286, 435, 483
Mox20I TGGCCA 1 cut(s) 452
MscI TGGCCA 1 cut(s) 452
MseI TTAA 4 cut(s) 56, 117, 188, 222
MslI CAYNNNNRTG 2 cut(s) 201, 404
Msp20I TGGCCA 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 412
Mva1269I GAATGC 2 cut(s) 232, 399
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 4 cut(s) 31, 33, 62, 64
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeI CATATG 1 cut(s) 274
NlaIII CATG 3 cut(s) 323, 338, 485
NlaIV GGNNCC 1 cut(s) 177
NspI RCATGY 2 cut(s) 323, 485
OliI CACNNNNGTG 1 cut(s) 201
PaeI GCATGC 1 cut(s) 323
PauI GCGCGC 2 cut(s) 29, 60
PctI GAATGC 2 cut(s) 232, 399
PfeI GAWTC 4 cut(s) 193, 365, 417, 493
PkrI GCNGC 3 cut(s) 253, 256, 325
PleI GAGTC 2 cut(s) 110, 127
PpsI GAGTC 2 cut(s) 110, 127
PpuMI RGGWCCY 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 176
PspPPI RGGWCCY 1 cut(s) 176
PteI GCGCGC 2 cut(s) 29, 60
RseI CAYNNNNRTG 2 cut(s) 201, 404
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 4 cut(s) 56, 117, 188, 222
SatI GCNGC 3 cut(s) 252, 255, 324
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 111, 127
ScrFI CCNGG 1 cut(s) 412
SetI ASST 5 cut(s) 238, 267, 317, 375, 450
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 201, 404
SmlI CTYRAG 2 cut(s) 55, 443
SmoI CTYRAG 2 cut(s) 55, 443
SphI GCATGC 1 cut(s) 323
Sse9I AATT 2 cut(s) 123, 498
SsiI CCGC 2 cut(s) 251, 254
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 4 cut(s) 115, 200, 362, 386
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 123, 498
TauI GCSGC 2 cut(s) 254, 257
TfiI GAWTC 4 cut(s) 193, 365, 417, 493
Tru1I TTAA 4 cut(s) 56, 117, 188, 222
Tru9I TTAA 4 cut(s) 56, 117, 188, 222
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 177, 333
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 118
Vha464I CTTAAG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 498
XceI RCATGY 2 cut(s) 323, 485
XmiI GTMKAC 1 cut(s) 131
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.