pycom12g10910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0017163
Physical Location & Seq
Reverse (-)
13032780 .. 13035144
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g10910.4

Sequence Viewer

Length: 366 bp
ATGGTTCTTAAGTATATTCTCAAAGTTCCATATACTTTGTGTAAACAACCACCAAACCGGAAGAAGAAGAACTCCATCTCATCTTCTCATCAATCCAAATCGCGTTCGAAGATGGTTTGCGTGGCGTGTCTCTTACCGCTTTTCCTCGTCCCAATCGTCAATCTTCTGCCCCTCCTCTTCGATTTGATCATGGGAAAAATTTACCAGCTTTTCGGATGGGAGTATAGGAAGCCAGAAAGGGCTCCTCCGGCGTGCCCTATTAAGCCTGTAGCTAAAAAGGACACCAAAGTGAGTGAAAAAGCTGAACCTGGGCAACCAGACTCTGCTCCAGAAACGGTGGGAGCGGAAGGCTTGAAGAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.52

Weight (kDa)

9.67

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03460
fragaria_vesca FvH4_6g16590 FvH4_6g16590 FvH4_6g16590
malus_domestica MD12G1108800.v1.1
prunus_persica Prupe.7G127400_v2.0.a1
pyrus_communis pycom12g10910
rosa_chinensis RchiOBHm_Chr3g0470531
rosa_multiflora Rmu_sc0002115.1_g000009
rosa_rugosa Rorug03G0109800
rosa_samantha Rh3BG184500 Rh3CG175000 Rh3DG190200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 344
AccII CGCG 1 cut(s) 103
AciI CCGC 2 cut(s) 137, 344
AcsI RAATTY 1 cut(s) 198
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 1 cut(s) 307
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 3 cut(s) 208, 272, 302
AluI AGCT 3 cut(s) 208, 272, 302
Alw26I GTCTC 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 323
ApoI RAATTY 1 cut(s) 198
AsuII TTCGAA 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 244
BccI CCATC 3 cut(s) 83, 106, 210
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 57
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 164, 234
BseSI GKGCMC 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 103
BsiSI CCGG 2 cut(s) 58, 248
BslFI GGGAC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 244, 257
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 2 cut(s) 137, 344
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 253
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 323
CviAII CATG 1 cut(s) 190
CviJI RGCY 7 cut(s) 208, 232, 242, 265, 272, 302, 351
CviKI_1 RGCY 7 cut(s) 208, 232, 242, 265, 272, 302, 351
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 244
FaeI CATG 1 cut(s) 193
FaiI YATR 5 cut(s) 15, 31, 33, 191, 225
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 189
FbaI TGATCA 1 cut(s) 186
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 312
HapII CCGG 2 cut(s) 58, 248
Hin1II CATG 1 cut(s) 193
HinfI GANTC 1 cut(s) 320
HpaII CCGG 2 cut(s) 58, 248
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92II CATG 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 3 cut(s) 247, 331, 341
LpnPI CCDG 9 cut(s) 71, 218, 246, 261, 279, 294, 321, 330, 342
MalI GATC 1 cut(s) 188
MbiI CCGCTC 1 cut(s) 344
MboI GATC 1 cut(s) 186
MboII GAAGA 7 cut(s) 73, 75, 76, 79, 121, 155, 169
MhlI GDGCHC 2 cut(s) 244, 257
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 4 cut(s) 155, 182, 185, 255
MseI TTAA 2 cut(s) 9, 261
MslI CAYNNNNRTG 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 58, 248
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 1 cut(s) 186
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 9, 261
Sau3AI GATC 1 cut(s) 186
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 2 cut(s) 244, 257
SetI ASST 4 cut(s) 210, 274, 304, 310
SfcI CTRYAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 198
SsiI CCGC 2 cut(s) 137, 344
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 107, 180
TasI AATT 1 cut(s) 198
Tru1I TTAA 2 cut(s) 9, 261
Tru9I TTAA 2 cut(s) 9, 261
Vha464I CTTAAG 1 cut(s) 8
XapI RAATTY 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.