MD13G1029000.v1.1

Anaphase-promoting complex subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
2065654 .. 2067141
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1029000.v1.1.491

Sequence Viewer

Length: 1488 bp
ATGGAGGAAGATGACATTGTGGACGGCGATTTCTACCTCCTTGCTAAGTCGTATTTTGACTGCAGGGAGTACAGAAGAGCTGCTCATGTGCTTCGTGATCAGAACGGAAAGAAGTCGGTCTTCTTACGCTCCTATGCTCTTTATCTGGCTGGAGAAAAACGGAAAGAGGAAGAAATGATAGAACTTGAGGGGCCCCTAGGAAAGAGCGATATTGTGAATGGTGAACTGGTTTCTCTCGAGAGGGAGTTATCAACCCTTCGCAAGAATGGGACTATTGATCCTTTTGGACTCTACTTGTATGGCCTTGTGCTCAAAGACAAAGGCAGCAAGAGTCTTGCTCTTACAGTTCTTGTGGAGTCTGTTAATAGCTACCCTTGGAACTGGAGTGCCTGGTCGGAGCTGCAGTCGTTGTGCACTACAGTTGATGTCTTGAACAGCCTTAAGCTCAATAACCATTGGATGAAGGACTTCTTTCTCGCCAGTGCTTATCAAGAACTGAGGAAGCACAGTGAATCCTTAAAACAATATGAATATCTTAAGGGCACTTTTGTTTTCAGTAATTACATTCAGGCTCAAATTGCAAAGGCACAATACAATCTCAGGGAATTTGAACAAGTTGAAGCAATTTTTGAAGAACTTCTCAGGAATGACCCTTATCGAGTGGAAGACATGGACATGTATTCCAATGTGCTATATGCAAAGGAGTGCTACTCTGCACTAAGTTATCTTGCCCATAGAGTATTTATCACTGATAAATACAGGCCTGAATCTTGTTGTATTATCGGAAATTACTACAGCTTAAAAGGGCAGCATGAGAAGGCGGTTGTGTACTTTAGGAGGGCACTCAAATTGAACAGAAACTATTTATCTGCTTGGACCCTTATGGGTCATGAATATGTTGAGATGAAAAACACCCCAGCTGCTATTGAGGCATATCGACATGCTGTAGATATAAATCCATGTGATTATCGAGCTTGGTATGGATTAGGACAAGCTTATGAGATGATGAGTATGCCCTTGTATGCTCTTTATTACTTCAAGAAATCAGTATTCTTGCAGCCAAATGATTCTCGGTTGTGGATTGCTATGGCCAAATGTTATGAAACTGAACAGCTGCACATGACTGAGGAAGCGATGAAGTGTTACAAAAGGGCAGTTAATTGTAATGACAGGGAAGCAATTGCCCTGCACCAACTAGCAAAGCTAAATTCTGAACTTGGACGTTCTGAAGAGGCAGCTTATTACTACAAGAAGGATTTGGAGAGGATGGAAGCCGAAGACAGGGAAGGACCAAATATGGTAGAAACCCTGTTATATCTTGCTCAATACTATAGGCAGCAGAAAAGATTTGAAGAATCAGAGATCTACTGTACCCGTCTTCTAGATTATACTGGCCCAGAAAAGGAAACAGCAAAGAGCTTACTTCGAGGAATGAGAATAGAACAAGCTGGTGGTCCTTCAATGGATGTTGAGCACTTTCCTCCCTAA

Protein Analysis

496

Amino Acids

58.04

Weight (kDa)

5.67

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC8 PF04049 9 - 194 2e-61 Anaphase promoting complex subunit 8 / Cdc23
TPR_1 PF00515 256 - 288 4.9e-07 Tetratricopeptide repeat
TPR_8 PF13181 256 - 287 5.7e-06 Tetratricopeptide repeat
TPR_11 PF13414 296 - 336 6.9e-08 TPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 821
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 1089
AcsI RAATTY 2 cut(s) 605, 1207
AcuI CTGAAG 1 cut(s) 1248
AfaI GTAC 3 cut(s) 71, 830, 1372
AfiI CCNNNNNNNGG 2 cut(s) 1281, 1402
AflII CTTAAG 2 cut(s) 440, 536
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 8 cut(s) 433, 611, 620, 632, 853, 1039, 1352, 1461
AjnI CCWGG 1 cut(s) 389
Alw21I GWGCWC 3 cut(s) 312, 416, 1476
Alw44I GTGCAC 1 cut(s) 412
AlwI GGATC 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 5 cut(s) 191, 301, 761, 1089, 1393
ApaI GGGCCC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 412
ApeKI GCWGC 9 cut(s) 80, 324, 400, 808, 920, 1057, 1114, 1235, 1336
ApoI RAATTY 2 cut(s) 605, 1207
Asp700I GAANNNNTTC 2 cut(s) 467, 636
AspA2I CCTAGG 1 cut(s) 196
AspS9I GGNCC 6 cut(s) 191, 192, 876, 1289, 1394, 1454
AsuHPI GGTGA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 876, 1289, 1454
AvrII CCTAGG 1 cut(s) 196
BaeGI GKGCMC 4 cut(s) 195, 416, 545, 844
BalI TGGCCA 1 cut(s) 1091
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 4 cut(s) 112, 672, 1284, 1370
Bbv12I GWGCWC 3 cut(s) 312, 416, 1476
BbvI GCAGC 9 cut(s) 67, 336, 387, 820, 907, 1069, 1101, 1247, 1348
BccI CCATC 1 cut(s) 1261
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 391
BclI TGATCA 1 cut(s) 97
BfaI CTAG 3 cut(s) 197, 1196, 1382
BfmI CTRYAG 6 cut(s) 61, 401, 417, 793, 945, 1330
BfrI CTTAAG 2 cut(s) 440, 536
BglII AGATCT 1 cut(s) 1362
BisI GCNGC 9 cut(s) 81, 325, 401, 809, 921, 1058, 1115, 1236, 1337
BlnI CCTAGG 1 cut(s) 196
BlsI GCNGC 9 cut(s) 82, 326, 402, 810, 922, 1059, 1116, 1237, 1338
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 3 cut(s) 876, 1289, 1454
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 6 cut(s) 191, 192, 876, 1289, 1394, 1454
BmiI GGNNCC 4 cut(s) 192, 193, 194, 878
BmrFI CCNGG 1 cut(s) 391
BpiI GAAGAC 4 cut(s) 112, 672, 1284, 1370
BplI GAGNNNNNCTC 4 cut(s) 322, 354, 695, 727
BpmI CTGGAG 2 cut(s) 171, 403
BpuEI CTTGAG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 954
BsaJI CCNNGG 2 cut(s) 196, 374
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 1281, 1402
Bse1I ACTGG 4 cut(s) 231, 386, 480, 1396
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 196, 374
BseGI GGATG 3 cut(s) 465, 1272, 1471
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 2 cut(s) 1281, 1402
BseMII CTCAG 4 cut(s) 488, 613, 655, 1116
BseNI ACTGG 4 cut(s) 231, 386, 480, 1396
BseSI GKGCMC 4 cut(s) 195, 416, 545, 844
BseXI GCAGC 9 cut(s) 67, 336, 387, 820, 907, 1069, 1101, 1247, 1348
BseYI CCCAGC 1 cut(s) 916
BsgI GTGCAG 3 cut(s) 699, 1100, 1172
BshFI GGCC 5 cut(s) 193, 303, 763, 1091, 1395
BsiHKAI GWGCWC 3 cut(s) 312, 416, 1476
BsiHKCI CYCGRG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 2 cut(s) 1281, 1402
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 5 cut(s) 193, 303, 763, 1091, 1395
BsoBI CYCGRG 1 cut(s) 236
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 6 cut(s) 195, 312, 416, 545, 844, 1476
Bsp143I GATC 3 cut(s) 97, 277, 1362
BspACI CCGC 1 cut(s) 821
BspANI GGCC 5 cut(s) 193, 303, 763, 1091, 1395
BspCNI CTCAG 4 cut(s) 489, 612, 654, 1117
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 4 cut(s) 192, 193, 194, 878
BspMAI CTGCAG 2 cut(s) 65, 405
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 70
BspTI CTTAAG 2 cut(s) 440, 536
BsrI ACTGG 4 cut(s) 231, 386, 480, 1396
BssECI CCNNGG 2 cut(s) 196, 374
BssMI GATC 3 cut(s) 97, 277, 1362
BssT1I CCWWGG 2 cut(s) 196, 374
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 4 cut(s) 346, 421, 509, 1370
Bst6I CTCTTC 2 cut(s) 70, 1224
BstAFI CTTAAG 2 cut(s) 440, 536
BstDEI CTNAG 6 cut(s) 45, 497, 599, 641, 719, 1125
BstF5I GGATG 3 cut(s) 465, 1272, 1471
BstKTI GATC 3 cut(s) 100, 280, 1365
BstMBI GATC 3 cut(s) 97, 277, 1362
BstMWI GCNNNNNNNGC 2 cut(s) 578, 929
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 2 cut(s) 679, 944
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 6 cut(s) 61, 401, 417, 793, 945, 1330
BstSLI GKGCMC 4 cut(s) 195, 416, 545, 844
BstV1I GCAGC 9 cut(s) 67, 336, 387, 820, 907, 1069, 1101, 1247, 1348
BstV2I GAAGAC 4 cut(s) 112, 672, 1284, 1370
BstX2I RGATCY 1 cut(s) 1362
BstYI RGATCY 1 cut(s) 1362
BsuRI GGCC 5 cut(s) 193, 303, 763, 1091, 1395
BtgZI GCGATG 1 cut(s) 1148
BtsCI GGATG 3 cut(s) 465, 1272, 1471
BtsIMutI CAGTG 3 cut(s) 487, 514, 747
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 6 cut(s) 191, 192, 876, 1289, 1394, 1454
Csp6I GTAC 3 cut(s) 70, 829, 1371
CviAII CATG 8 cut(s) 86, 670, 676, 812, 890, 941, 960, 1120
CviQI GTAC 3 cut(s) 70, 829, 1371
DdeI CTNAG 6 cut(s) 45, 497, 599, 641, 719, 1125
DpnI GATC 3 cut(s) 99, 279, 1364
DpnII GATC 3 cut(s) 97, 277, 1362
EaeI YGGCCR 1 cut(s) 1089
Eam1104I CTCTTC 2 cut(s) 70, 1224
EarI CTCTTC 2 cut(s) 70, 1224
Eco130I CCWWGG 2 cut(s) 196, 374
Eco147I AGGCCT 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 3 cut(s) 876, 1289, 1454
Eco57I CTGAAG 1 cut(s) 1248
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 191, 192
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 2 cut(s) 196, 374
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 2 cut(s) 196, 374
FaeI CATG 8 cut(s) 89, 673, 679, 815, 893, 944, 963, 1123
FalI AAGNNNNNCTT 4 cut(s) 104, 136, 455, 487
FaqI GGGAC 1 cut(s) 283
FatI CATG 8 cut(s) 85, 669, 675, 811, 889, 940, 959, 1119
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 9 cut(s) 81, 325, 401, 809, 921, 1058, 1115, 1236, 1337
FokI GGATG 3 cut(s) 472, 1279, 1478
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 9 cut(s) 81, 325, 401, 809, 921, 1058, 1115, 1236, 1337
FspBI CTAG 3 cut(s) 197, 1196, 1382
GluI GCNGC 9 cut(s) 81, 325, 401, 809, 921, 1058, 1115, 1236, 1337
GsaI CCCAGC 1 cut(s) 920
GsuI CTGGAG 2 cut(s) 171, 403
HaeIII GGCC 5 cut(s) 193, 303, 763, 1091, 1395
Hin1II CATG 8 cut(s) 89, 673, 679, 815, 893, 944, 963, 1123
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 7 cut(s) 288, 331, 356, 512, 767, 1067, 1355
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 4 cut(s) 22, 224, 414, 829
Hpy188I TCNGA 6 cut(s) 102, 397, 785, 1213, 1228, 1360
Hpy188III TCNNGA 9 cut(s) 95, 236, 238, 430, 491, 643, 890, 1039, 1382
Hpy8I GTNNAC 4 cut(s) 22, 224, 414, 829
HpyAV CCTTC 6 cut(s) 266, 457, 811, 1246, 1280, 1467
HpyCH4III ACNGT 4 cut(s) 346, 421, 509, 1370
HpyCH4IV ACGT 1 cut(s) 1222
HpyCH4V TGCA 9 cut(s) 63, 403, 414, 581, 698, 716, 1057, 1117, 1189
HpyF10VI GCNNNNNNNGC 2 cut(s) 578, 929
HpyF3I CTNAG 6 cut(s) 45, 497, 599, 641, 719, 1125
HpySE526I ACGT 1 cut(s) 1222
Hsp92II CATG 8 cut(s) 89, 673, 679, 815, 893, 944, 963, 1123
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 277, 1362
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 134, 397
Lsp1109I GCAGC 9 cut(s) 67, 336, 387, 820, 907, 1069, 1101, 1247, 1348
MaeI CTAG 3 cut(s) 197, 1196, 1382
MaeII ACGT 1 cut(s) 1222
MaeIII GTNAC 1 cut(s) 1142
MalI GATC 3 cut(s) 99, 279, 1364
MboI GATC 3 cut(s) 97, 277, 1362
MfeI CAATTG 1 cut(s) 1179
MflI RGATCY 1 cut(s) 1362
MhlI GDGCHC 6 cut(s) 195, 312, 416, 545, 844, 1476
MlsI TGGCCA 1 cut(s) 1091
MluCI AATT 9 cut(s) 559, 576, 605, 624, 787, 848, 1159, 1179, 1207
MluNI TGGCCA 1 cut(s) 1091
MlyI GAGTC 3 cut(s) 282, 340, 365
MmeI TCCRAC 1 cut(s) 375
Mox20I TGGCCA 1 cut(s) 1091
MroXI GAANNNNTTC 2 cut(s) 467, 636
MscI TGGCCA 1 cut(s) 1091
MseI TTAA 6 cut(s) 363, 441, 518, 537, 800, 1158
MslI CAYNNNNRTG 2 cut(s) 674, 894
Msp20I TGGCCA 1 cut(s) 1091
MspA1I CMGCKG 2 cut(s) 920, 1114
MspCI CTTAAG 2 cut(s) 440, 536
MspR9I CCNGG 1 cut(s) 391
MunI CAATTG 1 cut(s) 1179
MvaI CCWGG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 578, 929
NdeII GATC 3 cut(s) 97, 277, 1362
NlaIII CATG 8 cut(s) 89, 673, 679, 815, 893, 944, 963, 1123
NlaIV GGNNCC 4 cut(s) 192, 193, 194, 878
NspI RCATGY 2 cut(s) 679, 944
PaeR7I CTCGAG 1 cut(s) 236
PagI TCATGA 1 cut(s) 889
PceI AGGCCT 1 cut(s) 763
PciI ACATGT 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 467, 636
PfeI GAWTC 4 cut(s) 512, 767, 1067, 1355
PkrI GCNGC 9 cut(s) 82, 326, 402, 810, 922, 1059, 1116, 1237, 1338
PleI GAGTC 3 cut(s) 282, 339, 364
PpsI GAGTC 3 cut(s) 282, 339, 364
PscI ACATGT 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 916
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 4 cut(s) 192, 193, 194, 878
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 6 cut(s) 191, 192, 876, 1289, 1394, 1454
PstI CTGCAG 2 cut(s) 65, 405
PsuI RGATCY 1 cut(s) 1362
PvuII CAGCTG 2 cut(s) 920, 1114
RsaI GTAC 3 cut(s) 71, 830, 1372
RsaNI GTAC 3 cut(s) 70, 829, 1371
RseI CAYNNNNRTG 2 cut(s) 674, 894
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 6 cut(s) 363, 441, 518, 537, 800, 1158
SatI GCNGC 9 cut(s) 81, 325, 401, 809, 921, 1058, 1115, 1236, 1337
Sau3AI GATC 3 cut(s) 97, 277, 1362
Sau96I GGNCC 6 cut(s) 191, 192, 876, 1289, 1394, 1454
SchI GAGTC 3 cut(s) 282, 340, 365
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 6 cut(s) 195, 312, 416, 545, 844, 1476
SfcI CTRYAG 6 cut(s) 61, 401, 417, 793, 945, 1330
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 3 cut(s) 876, 1289, 1454
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 674, 894
SmlI CTYRAG 4 cut(s) 185, 236, 440, 536
SmoI CTYRAG 4 cut(s) 185, 236, 440, 536
Sse9I AATT 9 cut(s) 559, 576, 605, 624, 787, 848, 1159, 1179, 1207
SseBI AGGCCT 1 cut(s) 763
SsiI CCGC 1 cut(s) 821
SspMI CTAG 3 cut(s) 197, 1196, 1382
StuI AGGCCT 1 cut(s) 763
StyD4I CCNGG 1 cut(s) 389
StyI CCWWGG 2 cut(s) 196, 374
TaaI ACNGT 4 cut(s) 346, 421, 509, 1370
TaiI ACGT 1 cut(s) 1225
TaqI TCGA 5 cut(s) 237, 658, 937, 970, 1426
TaqII GACCGA 1 cut(s) 106
TasI AATT 9 cut(s) 559, 576, 605, 624, 787, 848, 1159, 1179, 1207
TatI WGTACW 2 cut(s) 69, 828
TfiI GAWTC 4 cut(s) 512, 767, 1067, 1355
Tru1I TTAA 6 cut(s) 363, 441, 518, 537, 800, 1158
Tru9I TTAA 6 cut(s) 363, 441, 518, 537, 800, 1158
TscAI CASTG 3 cut(s) 487, 514, 754
TseI GCWGC 9 cut(s) 80, 324, 400, 808, 920, 1057, 1114, 1235, 1336
TspDTI ATGAA 6 cut(s) 476, 543, 906, 920, 1116, 1151
TspGWI ACGGA 2 cut(s) 120, 175
TspRI CASTG 3 cut(s) 487, 514, 754
Vha464I CTTAAG 2 cut(s) 440, 536
VneI GTGCAC 1 cut(s) 412
VpaK11BI GGWCC 3 cut(s) 876, 1289, 1454
XapI RAATTY 2 cut(s) 605, 1207
XbaI TCTAGA 1 cut(s) 1381
XceI RCATGY 2 cut(s) 679, 944
XhoI CTCGAG 1 cut(s) 236
XmaJI CCTAGG 1 cut(s) 196
XmnI GAANNNNTTC 2 cut(s) 467, 636
XspI CTAG 3 cut(s) 197, 1196, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.