Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008596

Physical Location & Seq

Genomic Coordinates Reverse (-)

18366327 .. 18367651

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGTTCGAAAGAGAAGTACAGAATCCAGCTTCGAACTGCGATTCGACAGCTGAGCGATCGATCCTGCCTCTACGCCGCTTCCAAATGGGCGGCAGAGCAGCTCGTCGGCATCATCGAGCAAGACCCGGTTAAGTTCACGCGTGCGAACACGAGATTCCAGCGCGGGAGCTCCAGCATCCGGCGCAGATTCCGCACCAACGACATCACCCCGACGTCGGCTGCCGGCGTGTCGTATGTGTCCACTCCGGTGATGGAGGAAGATGACATTGTGGACGGCATTTTGACTGCAGGGAGTACAGAAGAGCTGCTCATGTGCTTCGTGATCAGAACGGAAAGAAGTCGTGCTCTTTATCTGGCTGGAGAAAAGCGGAAAGAGGAAGAAATGATGGAACTTGAGGGGCCCCTAGGAAAGAGCGATGTTGTGAATGGTGAACTGGTTTCTCTCGAGAGGGAGTTATCAACCCTTCGCAAGAATCCCATATTGATCCTTCGATGTAACAAAGCTATGGACTCTACTTGTATGGCCTTGTGCTCAAAGACAAAGGCAGCAAGAGTCTTGCTCTTACAGTTCTTGTGGAGTCTGTTAATAGCTACCCTTGGCACTGGAGTGGCTGGTCGGAGCTGCAGTCGTTGTGCACTACAGTTGATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0031347 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC8 TPR_1 TPR_11 TPR_7 TPR_8

Protein Analysis

219

Amino Acids

24.31

Weight (kDa)

9.15

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48150 AT3G48150
fragaria_vesca	FvH4_5g16310 FvH4_5g16310
malus_domestica	MD06G1182000.v1.1 MD13G1029000.v1.1 MD14G1188000.v1.1 MD17G1271900.v1.1 MD17G1272000.v1.1
prunus_persica	Prupe.5G180200_v2.0.a1
pyrus_communis	pycom06g16100 pycom14g15910
rosa_chinensis	RchiOBHm_Chr7g0179821
rosa_laevigata	RLG00000005321
rosa_multiflora	Rmu_sc0001754.1_g000005 Rmu_sc0004156.1_g000010
rosa_roxburghii	Rroxscaffold_3G00273440
rosa_rugosa	Rorug06G0428500
rosa_samantha	Rh7AG028300 Rh7BG027200 Rh7CG029200 Rh7DG028700
rosa_wichuraiana	Rw7G002260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccII	CGCG	2 cut(s)	142, 165
AciI	CCGC	5 cut(s)	78, 92, 165, 193, 370
AclWI	GGATC	2 cut(s)	57, 481
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	20, 298
AfiI	CCNNNNNNNGG	2 cut(s)	180, 217
AflIII	ACRYGT	1 cut(s)	140
AleI	CACNNNNGTG	2 cut(s)	248, 608
AluBI	AGCT	8 cut(s)	31, 52, 103, 171, 307, 506, 593, 624
AluI	AGCT	8 cut(s)	31, 52, 103, 171, 307, 506, 593, 624
Alw21I	GWGCWC	4 cut(s)	173, 349, 536, 640
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	57, 481
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	401, 525
ApaI	GGGCCC	1 cut(s)	405
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	5 cut(s)	100, 221, 307, 548, 624
AspA2I	CCTAGG	1 cut(s)	406
AspLEI	GCGC	2 cut(s)	165, 186
AspS9I	GGNCC	2 cut(s)	401, 402
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	199, 262, 443
AsuII	TTCGAA	2 cut(s)	8, 34
AvaI	CYCGRG	1 cut(s)	446
AvrII	CCTAGG	1 cut(s)	406
BaeGI	GKGCMC	2 cut(s)	405, 640
BanII	GRGCYC	2 cut(s)	173, 405
BauI	CACGAG	1 cut(s)	151
Bbv12I	GWGCWC	4 cut(s)	173, 349, 536, 640
BbvI	GCAGC	5 cut(s)	112, 208, 294, 560, 611
BccI	CCATC	2 cut(s)	247, 382
BceAI	ACGGC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	128
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	3 cut(s)	288, 625, 641
BisI	GCNGC	7 cut(s)	78, 93, 101, 222, 308, 549, 625
BlnI	CCTAGG	1 cut(s)	406
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	7 cut(s)	79, 94, 102, 223, 309, 550, 626
Bme1390I	CCNGG	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	401, 402
BmiI	GGNNCC	3 cut(s)	402, 403, 404
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	120, 186
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	3 cut(s)	157, 381, 627
Bpu1102I	GCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	2 cut(s)	8, 34
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	406, 598
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 217
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	441, 610
BseCI	ATCGAT	1 cut(s)	61
BseDI	CCNNGG	2 cut(s)	406, 598
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	180, 217
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	441, 610
BseSI	GKGCMC	2 cut(s)	405, 640
BseXI	GCAGC	5 cut(s)	112, 208, 294, 560, 611
Bsh1236I	CGCG	2 cut(s)	142, 165
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	403, 527
BshVI	ATCGAT	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	4 cut(s)	173, 349, 536, 640
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	128, 181, 225, 248
BslI	CCNNNNNNNGG	2 cut(s)	180, 217
BsnI	GGCC	2 cut(s)	403, 527
BsoBI	CYCGRG	1 cut(s)	446
Bsp119I	TTCGAA	2 cut(s)	8, 34
Bsp120I	GGGCCC	1 cut(s)	401
Bsp1286I	GDGCHC	5 cut(s)	173, 349, 405, 536, 640
Bsp143I	GATC	4 cut(s)	58, 62, 324, 486
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	5 cut(s)	78, 92, 165, 193, 370
BspANI	GGCC	2 cut(s)	403, 527
BspCNI	CTCAG	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	142, 165
BspLI	GGNNCC	3 cut(s)	402, 403, 404
BspMAI	CTGCAG	2 cut(s)	292, 629
BspPI	GGATC	2 cut(s)	57, 481
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	2 cut(s)	8, 34
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	441, 610
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	406, 598
BssMI	GATC	4 cut(s)	58, 62, 324, 486
BssNI	GRCGYC	1 cut(s)	215
BssSI	CACGAG	1 cut(s)	151
BssT1I	CCWWGG	2 cut(s)	406, 598
Bst2BI	CACGAG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	570, 645
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	215
BstBI	TTCGAA	2 cut(s)	8, 34
BstC8I	GCNNGC	2 cut(s)	144, 226
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	142, 165
BstHHI	GCGC	2 cut(s)	165, 186
BstKTI	GATC	4 cut(s)	61, 65, 327, 489
BstMBI	GATC	4 cut(s)	58, 62, 324, 486
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 192
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	3 cut(s)	288, 625, 641
BstSLI	GKGCMC	2 cut(s)	405, 640
BstUI	CGCG	2 cut(s)	142, 165
BstV1I	GCAGC	5 cut(s)	112, 208, 294, 560, 611
Bsu15I	ATCGAT	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	403, 527
BsuTUI	ATCGAT	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	144, 226
CfoI	GCGC	2 cut(s)	165, 186
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	401, 402
ClaI	ATCGAT	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	19, 297
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	2 cut(s)	19, 297
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	4 cut(s)	60, 64, 326, 488
DpnII	GATC	4 cut(s)	58, 62, 324, 486
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	2 cut(s)	406, 598
Eco24I	GRGCYC	2 cut(s)	173, 405
Eco53kI	GAGCTC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	171
EcoO109I	RGGNCCY	2 cut(s)	401, 402
EcoT14I	CCWWGG	2 cut(s)	406, 598
EcoT38I	GRGCYC	2 cut(s)	173, 405
ErhI	CCWWGG	2 cut(s)	406, 598
FaeI	CATG	1 cut(s)	316
FaiI	YATR	5 cut(s)	237, 314, 482, 509, 524
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	7 cut(s)	78, 93, 101, 222, 308, 549, 625
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	173, 405
Fsp4HI	GCNGC	7 cut(s)	78, 93, 101, 222, 308, 549, 625
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	2 cut(s)	164, 185
GluI	GCNGC	7 cut(s)	78, 93, 101, 222, 308, 549, 625
GsuI	CTGGAG	3 cut(s)	157, 381, 627
HaeIII	GGCC	2 cut(s)	403, 527
HapII	CCGG	4 cut(s)	128, 181, 225, 248
HhaI	GCGC	2 cut(s)	165, 186
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	2 cut(s)	163, 184
HinP1I	GCGC	2 cut(s)	163, 184
HinfI	GANTC	8 cut(s)	24, 43, 156, 189, 475, 512, 555, 580
HpaII	CCGG	4 cut(s)	128, 181, 225, 248
HphI	GGTGA	3 cut(s)	199, 262, 443
Hpy166II	GTNNAC	5 cut(s)	138, 243, 274, 434, 638
Hpy188I	TCNGA	2 cut(s)	329, 621
Hpy188III	TCNNGA	4 cut(s)	322, 446, 448, 654
Hpy8I	GTNNAC	5 cut(s)	138, 243, 274, 434, 638
Hpy99I	CGWCG	3 cut(s)	110, 217, 220
HpyAV	CCTTC	2 cut(s)	476, 500
HpyCH4III	ACNGT	2 cut(s)	570, 645
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	290, 627, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 192
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	2 cut(s)	163, 184
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	58, 62, 324, 486
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	168, 176, 621
Lsp1109I	GCAGC	5 cut(s)	112, 208, 294, 560, 611
LweI	GCATC	2 cut(s)	120, 186
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	4 cut(s)	60, 64, 326, 488
MboI	GATC	4 cut(s)	58, 62, 324, 486
MboII	GAAGA	3 cut(s)	272, 314, 392
MhlI	GDGCHC	5 cut(s)	173, 349, 405, 536, 640
MluI	ACGCGT	1 cut(s)	140
MlyI	GAGTC	3 cut(s)	506, 564, 589
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	5 cut(s)	80, 250, 370, 391, 444
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	2 cut(s)	132, 587
MslI	CAYNNNNRTG	2 cut(s)	248, 608
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	4 cut(s)	128, 181, 225, 248
MspR9I	CCNGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	142, 165
MwoI	GCNNNNNNNGC	2 cut(s)	183, 192
NaeI	GCCGGC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	4 cut(s)	58, 62, 324, 486
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	402, 403, 404
NspV	TTCGAA	2 cut(s)	8, 34
OliI	CACNNNNGTG	2 cut(s)	248, 608
PaeR7I	CTCGAG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	5 cut(s)	24, 43, 156, 189, 475
PkrI	GCNGC	7 cut(s)	79, 94, 102, 223, 309, 550, 626
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	3 cut(s)	506, 563, 588
PpsI	GAGTC	3 cut(s)	506, 563, 588
Psp124BI	GAGCTC	1 cut(s)	173
PspN4I	GGNNCC	3 cut(s)	402, 403, 404
PspOMI	GGGCCC	1 cut(s)	401
PspPI	GGNCC	2 cut(s)	401, 402
PstI	CTGCAG	2 cut(s)	292, 629
PvuI	CGATCG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	20, 298
RsaNI	GTAC	2 cut(s)	19, 297
RseI	CAYNNNNRTG	2 cut(s)	248, 608
SacI	GAGCTC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	132, 587
SatI	GCNGC	7 cut(s)	78, 93, 101, 222, 308, 549, 625
Sau3AI	GATC	4 cut(s)	58, 62, 324, 486
Sau96I	GGNCC	2 cut(s)	401, 402
SchI	GAGTC	3 cut(s)	506, 564, 589
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	5 cut(s)	173, 349, 405, 536, 640
SetI	ASST	9 cut(s)	33, 54, 105, 173, 218, 309, 508, 595, 626
SfaNI	GCATC	2 cut(s)	120, 186
SfcI	CTRYAG	3 cut(s)	288, 625, 641
Sfr274I	CTCGAG	1 cut(s)	446
SfuI	TTCGAA	2 cut(s)	8, 34
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	248, 608
SmlI	CTYRAG	2 cut(s)	395, 446
SmoI	CTYRAG	2 cut(s)	395, 446
SsiI	CCGC	5 cut(s)	78, 92, 165, 193, 370
SspMI	CTAG	1 cut(s)	407
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	2 cut(s)	406, 598
TaaI	ACNGT	2 cut(s)	570, 645
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	7 cut(s)	8, 34, 46, 61, 117, 447, 493
TatI	WGTACW	2 cut(s)	18, 296
TauI	GCSGC	2 cut(s)	80, 95
TfiI	GAWTC	5 cut(s)	24, 43, 156, 189, 475
Tru1I	TTAA	2 cut(s)	132, 587
Tru9I	TTAA	2 cut(s)	132, 587
TscAI	CASTG	1 cut(s)	610
TseI	GCWGC	5 cut(s)	100, 221, 307, 548, 624
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	610
VneI	GTGCAC	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	446
XmaJI	CCTAGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	407
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.