Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013829

Physical Location & Seq

Genomic Coordinates Reverse (-)

2933003 .. 2934493

Gene Structure 1491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1042400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGCCTCCAATCATGCAGGACTTCTCCAACTCCGTCAAGCTCAAGTATGTCAAGCTCGGCTACCAGTACCTCGTCAACCACATTCTTACCCTCACTCTCATCCTCATCATGGCCGGAATCCTACTGGAGGTCATCCGCCTCGGCCCCGACGAGCTTCTCAAGCTCTGGGACTCACTTCACTTCGATCTCGTCCAAATCCTCTGCTCCTCATTCCTCATCATCTTCATCGCCACCGTCTACTTTATGTCCAAACCCCGCTCCATCTACCTCGTCGACTACGCCTGTTTCAAGCCTCCAGTCACCTGCCGCGTCCCCTTCTCCACCTTCATGGAGCACTCCCGCCTCAACCTCAGCAACAACCCCAAGAGCGTCGAGTTCCAGATGAGGATCCTCGAGCGCTCGGGCCTCGGGGAGGAGACCTGCCTCCCTCCGGCGATTCACTATATTCCGCCCAACCCCACCATGGAGGCCGCTAGGGGCGAGGCGGAGCTCGTCATCTTCTCCGCCATGGACTCTCTGTTCGAGAAGACTGGGCTCAAGCCCAAAGACATCGATATTCTCATTGTTAACTGTAGCCTCTTCTCGCCGACGCCGTCGCTCTCGGCGATGGTGATCAACAAGTACAAGCTCCGAAGCAACATCAAGAGCTTCAACCTCTCCGGCATGGGCTGCAGCGCCGGCCTCATTTCAATCGATTTGGCGCGCGACCTCCTCCAGGTGCATCCCAATTCCAACGCGGTGGTCGTCAGCACCGAGATCATCACCCCGAACTATTACCAAGGCAACGAGAGGGCGATGCTCCTCCCTAACTGCCTCTTCCGGATGGGCGGCGCCGCCTTGCTTTTATCAAACAGGAGGTCCGAGCACCGCCGCGCAAAATACCGATTGGTCCACGTAGTAAGGACACACAAGGGAGCAGATGACAAGGCGTATAGGTGCGTGTTCGAGGAAGAAGACAAGGAAGGCAACGTTGGAATTTCACTCTCTAAAGATCTGATGGCGATTGCGGGGGAAGCGCTGAAATCGAACATCACGACGATCGGCCCGCTAGTGCTGCCGGCGTCGGAGCAGTTGCTGTTTCTCTTCACGCTCATCGGCCGGAAAATCTTGAACCCGAAATGGAAGCCCTACATTCCTGATTTCCGAGAGGCGTTCGAGCACTTCTGCATCCACGCGGGCGGAAGGGCGGTGATCGACGAGCTGCAGAAGAATTTACAGCTGTCGGCGGAGCACTGCGAGGCGTCGAGGATGACACTGCACAGGTTCGGCAATACGTCGTCGTCGTCACTGTGGTACGAGTTGGGGTACATCGAGGCGAAGGGTAGGATGAAAAAAGGTGATAGGGTTTGGCAGATTGCATTCGGGAGCGGGTTTAAGTGCAACAGCGCGGTCTGGAAGTGCAATCGGACCATCACAACAACGTCAGATGGGCCCTGGGCTGATTGCATCGATAATTACCCGGTTCATATCCCTGAGGTGGTCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009922 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016746 GO:0016747 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

497

Amino Acids

55.82

Weight (kDa)

8.66

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	80 - 368	3.3e-139	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	386 - 466	3.1e-12	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	388 - 459	6.3e-09	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25450 AT1G68530
fragaria_vesca	FvH4_4g27420
malus_domestica	MD13G1042400.v1.1 MD16G1043300.v1.1
prunus_persica	Prupe.1G310500_v2.0.a1
pyrus_communis	pycom13g03670 pycom13g03690 pycom16g03740
rosa_chinensis	RchiOBHm_Chr4g0435241
rosa_laevigata	RLG00000006606
rosa_multiflora	Rmu_ssc0000339.1_g000014
rosa_roxburghii	Rroxscaffold_5G00376470
rosa_rugosa	Rorug04G0283600
rosa_samantha	Rh4AG339100 Rh4DG341700
rosa_wichuraiana	Rw4G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	2 cut(s)	311, 428
AccB1I	GGYRCC	1 cut(s)	830
AccBSI	CCGCTC	2 cut(s)	258, 1368
AccI	GTMKAC	2 cut(s)	237, 273
AccII	CGCG	7 cut(s)	309, 703, 705, 737, 873, 1175, 1388
AccIII	TCCGGA	1 cut(s)	819
AclI	AACGTT	1 cut(s)	969
AclWI	GGATC	2 cut(s)	382, 395
AcoI	YGGCCR	2 cut(s)	111, 1096
AcsI	RAATTY	2 cut(s)	975, 1210
AcyI	GRCGYC	4 cut(s)	590, 831, 1061, 1241
AfaI	GTAC	4 cut(s)	68, 623, 1295, 1307
AfeI	AGCGCT	2 cut(s)	398, 1017
AfiI	CCNNNNNNNGG	7 cut(s)	109, 127, 412, 430, 463, 715, 1477
AgsI	TTSAA	4 cut(s)	289, 652, 690, 1111
AjnI	CCWGG	2 cut(s)	714, 1433
AjuI	GAANNNNNNNTTGG	2 cut(s)	954, 986
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
Alw21I	GWGCWC	5 cut(s)	336, 492, 867, 1161, 1233
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	382, 395
AlwNI	CAGNNNCTG	1 cut(s)	1075
Ama87I	CYCGRG	3 cut(s)	392, 400, 407
Aor13HI	TCCGGA	1 cut(s)	819
Aor51HI	AGCGCT	2 cut(s)	398, 1017
AoxI	GGCC	8 cut(s)	111, 142, 403, 468, 679, 1042, 1096, 1430
ApaI	GGGCCC	1 cut(s)	1434
ApeKI	GCWGC	4 cut(s)	669, 672, 1054, 1201
ApoI	RAATTY	2 cut(s)	975, 1210
ArsI	GACNNNNNNTTYG	4 cut(s)	503, 535, 842, 874
AspLEI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
AspS9I	GGNCC	8 cut(s)	143, 403, 858, 889, 1043, 1407, 1430, 1431
AsuC2I	CCSGG	1 cut(s)	1460
AsuHPI	GGTGA	5 cut(s)	292, 622, 754, 1201, 1349
AvaI	CYCGRG	3 cut(s)	392, 400, 407
AvaII	GGWCC	3 cut(s)	858, 889, 1407
AxyI	CCTNAGG	1 cut(s)	1473
BaeGI	GKGCMC	1 cut(s)	1434
BamHI	GGATCC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	830
BanII	GRGCYC	3 cut(s)	492, 537, 1434
BbsI	GAAGAC	2 cut(s)	533, 960
Bbv12I	GWGCWC	5 cut(s)	336, 492, 867, 1161, 1233
BbvCI	CCTCAGC	1 cut(s)	350
BbvI	GCAGC	4 cut(s)	656, 684, 1041, 1188
BccI	CCATC	6 cut(s)	269, 601, 817, 991, 1418, 1421
BceAI	ACGGC	1 cut(s)	577
BciT130I	CCWGG	2 cut(s)	716, 1435
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	1460
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	2 cut(s)	474, 1049
BfmI	CTRYAG	3 cut(s)	571, 670, 1202
BfoI	RGCGCY	4 cut(s)	400, 678, 834, 1019
BfuAI	ACCTGC	2 cut(s)	311, 428
BglII	AGATCT	1 cut(s)	991
BisI	GCNGC	9 cut(s)	307, 471, 670, 673, 829, 834, 871, 1055, 1202
BlsI	GCNGC	9 cut(s)	308, 472, 671, 674, 830, 835, 872, 1056, 1203
Bme1390I	CCNGG	3 cut(s)	716, 1435, 1460
Bme18I	GGWCC	3 cut(s)	858, 889, 1407
BmeT110I	CYCGRG	3 cut(s)	392, 400, 407
BmgT120I	GGNCC	8 cut(s)	143, 403, 858, 889, 1043, 1407, 1430, 1431
BmiI	GGNNCC	4 cut(s)	145, 389, 832, 1432
BmrFI	CCNGG	3 cut(s)	716, 1435, 1460
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	4 cut(s)	730, 786, 1176, 1455
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	533, 960
BpmI	CTGGAG	3 cut(s)	146, 279, 698
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	3 cut(s)	26, 143, 521
BpuMI	CCSGG	1 cut(s)	1460
Bsa29I	ATCGAT	3 cut(s)	552, 693, 1449
BsaAI	YACGTR	1 cut(s)	895
BsaBI	GATNNNNATC	2 cut(s)	386, 611
BsaHI	GRCGYC	4 cut(s)	590, 831, 1061, 1241
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	7 cut(s)	139, 406, 462, 507, 778, 1433, 1434
BsaWI	WCCGGW	1 cut(s)	819
Bsc4I	CCNNNNNNNGG	7 cut(s)	109, 127, 412, 430, 463, 715, 1477
Bse118I	RCCGGY	2 cut(s)	677, 1057
Bse1I	ACTGG	4 cut(s)	64, 129, 296, 535
Bse21I	CCTNAGG	1 cut(s)	1473
Bse8I	GATNNNNATC	2 cut(s)	386, 611
BseAI	TCCGGA	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	716, 1435
BseCI	ATCGAT	3 cut(s)	552, 693, 1449
BseDI	CCNNGG	7 cut(s)	139, 406, 462, 507, 778, 1433, 1434
BseGI	GGATG	7 cut(s)	99, 132, 721, 828, 1167, 1254, 1332
BseJI	GATNNNNATC	2 cut(s)	386, 611
BseLI	CCNNNNNNNGG	7 cut(s)	109, 127, 412, 430, 463, 715, 1477
BseMII	CTCAG	2 cut(s)	364, 1464
BseNI	ACTGG	4 cut(s)	64, 129, 296, 535
BsePI	GCGCGC	1 cut(s)	701
BseRI	GAGGAG	4 cut(s)	196, 428, 701, 791
BseSI	GKGCMC	1 cut(s)	1434
BseX3I	CGGCCG	1 cut(s)	1096
BseXI	GCAGC	4 cut(s)	656, 684, 1041, 1188
BsgI	GTGCAG	1 cut(s)	1241
Bsh1236I	CGCG	7 cut(s)	309, 703, 705, 737, 873, 1175, 1388
Bsh1285I	CGRYCG	2 cut(s)	1041, 1099
BshFI	GGCC	8 cut(s)	113, 144, 405, 470, 681, 1044, 1098, 1432
BshNI	GGYRCC	1 cut(s)	830
BshVI	ATCGAT	3 cut(s)	552, 693, 1449
BsiEI	CGRYCG	2 cut(s)	1041, 1099
BsiHKAI	GWGCWC	5 cut(s)	336, 492, 867, 1161, 1233
BsiHKCI	CYCGRG	3 cut(s)	392, 400, 407
BsiSI	CCGG	8 cut(s)	114, 431, 660, 678, 820, 1058, 1099, 1460
BslFI	GGGAC	2 cut(s)	182, 296
BslI	CCNNNNNNNGG	7 cut(s)	109, 127, 412, 430, 463, 715, 1477
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	182, 296
BsmI	GAATGC	1 cut(s)	1358
BsnI	GGCC	8 cut(s)	113, 144, 405, 470, 681, 1044, 1098, 1432
Bso31I	GGTCTC	1 cut(s)	410
BsoBI	CYCGRG	3 cut(s)	392, 400, 407
Bsp120I	GGGCCC	1 cut(s)	1430
Bsp1286I	GDGCHC	7 cut(s)	336, 492, 537, 867, 1161, 1233, 1434
Bsp13I	TCCGGA	1 cut(s)	819
Bsp143I	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
Bsp19I	CCATGG	2 cut(s)	462, 507
BspANI	GGCC	8 cut(s)	113, 144, 405, 470, 681, 1044, 1098, 1432
BspCNI	CTCAG	2 cut(s)	363, 1465
BspDI	ATCGAT	3 cut(s)	552, 693, 1449
BspEI	TCCGGA	1 cut(s)	819
BspFNI	CGCG	7 cut(s)	309, 703, 705, 737, 873, 1175, 1388
BspLI	GGNNCC	4 cut(s)	145, 389, 832, 1432
BspMAI	CTGCAG	2 cut(s)	674, 1206
BspMI	ACCTGC	2 cut(s)	311, 428
BspPI	GGATC	2 cut(s)	382, 395
BspT107I	GGYRCC	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	410
BsrBI	CCGCTC	2 cut(s)	258, 1368
BsrFI	RCCGGY	2 cut(s)	677, 1057
BsrI	ACTGG	4 cut(s)	64, 129, 296, 535
BssAI	RCCGGY	2 cut(s)	677, 1057
BssECI	CCNNGG	7 cut(s)	139, 406, 462, 507, 778, 1433, 1434
BssHII	GCGCGC	1 cut(s)	701
BssMI	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
BssNI	GRCGYC	4 cut(s)	590, 831, 1061, 1241
BssT1I	CCWWGG	3 cut(s)	462, 507, 778
Bst2UI	CCWGG	2 cut(s)	716, 1435
Bst4CI	ACNGT	3 cut(s)	235, 572, 1290
Bst6I	CTCTTC	3 cut(s)	584, 821, 1088
BstACI	GRCGYC	4 cut(s)	590, 831, 1061, 1241
BstAPI	GCANNNNNTGC	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	895
BstC8I	GCNNGC	5 cut(s)	679, 703, 1046, 1059, 1177
BstDEI	CTNAG	2 cut(s)	350, 1473
BstDSI	CCRYGG	2 cut(s)	462, 507
BstENI	CCTNNNNNAGG	3 cut(s)	125, 410, 713
BstF5I	GGATG	7 cut(s)	99, 132, 721, 828, 1167, 1254, 1332
BstFNI	CGCG	7 cut(s)	309, 703, 705, 737, 873, 1175, 1388
BstH2I	RGCGCY	4 cut(s)	400, 678, 834, 1019
BstHHI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
BstKTI	GATC	7 cut(s)	187, 390, 615, 759, 994, 1041, 1194
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
BstMCI	CGRYCG	2 cut(s)	1041, 1099
BstMWI	GCNNNNNNNGC	5 cut(s)	160, 669, 678, 1013, 1054
BstNI	CCWGG	2 cut(s)	716, 1435
BstSCI	CCNGG	3 cut(s)	714, 1433, 1458
BstSFI	CTRYAG	3 cut(s)	571, 670, 1202
BstSLI	GKGCMC	1 cut(s)	1434
BstUI	CGCG	7 cut(s)	309, 703, 705, 737, 873, 1175, 1388
BstV1I	GCAGC	4 cut(s)	656, 684, 1041, 1188
BstV2I	GAAGAC	2 cut(s)	533, 960
BstX2I	RGATCY	2 cut(s)	387, 991
BstXI	CCANNNNNNTGG	2 cut(s)	328, 739
BstYI	RGATCY	2 cut(s)	387, 991
BstZI	CGGCCG	1 cut(s)	1096
Bsu15I	ATCGAT	3 cut(s)	552, 693, 1449
Bsu36I	CCTNAGG	1 cut(s)	1473
BsuRI	GGCC	8 cut(s)	113, 144, 405, 470, 681, 1044, 1098, 1432
BsuTUI	ATCGAT	3 cut(s)	552, 693, 1449
BtgI	CCRYGG	2 cut(s)	462, 507
BtgZI	GCGATG	3 cut(s)	211, 620, 809
BtsCI	GGATG	7 cut(s)	99, 132, 721, 828, 1167, 1254, 1332
BtsI	GCAGTG	2 cut(s)	1231, 1253
BtsIMutI	CAGTG	3 cut(s)	1231, 1253, 1286
BveI	ACCTGC	2 cut(s)	311, 428
Cac8I	GCNNGC	5 cut(s)	679, 703, 1046, 1059, 1177
CaiI	CAGNNNCTG	1 cut(s)	1075
CfoI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
Cfr10I	RCCGGY	2 cut(s)	677, 1057
Cfr13I	GGNCC	8 cut(s)	143, 403, 858, 889, 1043, 1407, 1430, 1431
ClaI	ATCGAT	3 cut(s)	552, 693, 1449
CseI	GACGC	5 cut(s)	298, 358, 598, 1050, 1230
Csp6I	GTAC	4 cut(s)	67, 622, 1294, 1306
CviAII	CATG	6 cut(s)	13, 109, 328, 463, 508, 664
CviQI	GTAC	4 cut(s)	67, 622, 1294, 1306
DdeI	CTNAG	2 cut(s)	350, 1473
DinI	GGCGCC	1 cut(s)	832
DpnI	GATC	7 cut(s)	186, 389, 614, 758, 993, 1040, 1193
DpnII	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
EaeI	YGGCCR	2 cut(s)	111, 1096
EagI	CGGCCG	1 cut(s)	1096
Eam1104I	CTCTTC	3 cut(s)	584, 821, 1088
EarI	CTCTTC	3 cut(s)	584, 821, 1088
EciI	GGCGGA	6 cut(s)	125, 438, 493, 500, 1194, 1241
Ecl136II	GAGCTC	1 cut(s)	490
EclXI	CGGCCG	1 cut(s)	1096
Eco130I	CCWWGG	3 cut(s)	462, 507, 778
Eco24I	GRGCYC	3 cut(s)	492, 537, 1434
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	3 cut(s)	858, 889, 1407
Eco47III	AGCGCT	2 cut(s)	398, 1017
Eco52I	CGGCCG	1 cut(s)	1096
Eco53kI	GAGCTC	1 cut(s)	490
Eco81I	CCTNAGG	1 cut(s)	1473
Eco88I	CYCGRG	3 cut(s)	392, 400, 407
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	3 cut(s)	125, 410, 713
EcoO109I	RGGNCCY	1 cut(s)	1431
EcoRII	CCWGG	2 cut(s)	714, 1433
EcoT14I	CCWWGG	3 cut(s)	462, 507, 778
EcoT38I	GRGCYC	3 cut(s)	492, 537, 1434
EgeI	GGCGCC	1 cut(s)	832
EheI	GGCGCC	1 cut(s)	832
ErhI	CCWWGG	3 cut(s)	462, 507, 778
FaeI	CATG	6 cut(s)	16, 112, 331, 466, 511, 667
FaqI	GGGAC	2 cut(s)	182, 296
FatI	CATG	6 cut(s)	12, 108, 327, 462, 507, 663
FauI	CCCGC	6 cut(s)	263, 347, 1000, 1053, 1168, 1361
FbaI	TGATCA	1 cut(s)	612
FblI	GTMKAC	2 cut(s)	237, 273
Fnu4HI	GCNGC	9 cut(s)	307, 471, 670, 673, 829, 834, 871, 1055, 1202
FokI	GGATG	7 cut(s)	86, 119, 708, 835, 1154, 1261, 1339
FriOI	GRGCYC	3 cut(s)	492, 537, 1434
Fsp4HI	GCNGC	9 cut(s)	307, 471, 670, 673, 829, 834, 871, 1055, 1202
FspBI	CTAG	2 cut(s)	474, 1049
GlaI	GCGC	8 cut(s)	398, 676, 702, 704, 832, 874, 1017, 1387
GluI	GCNGC	9 cut(s)	307, 471, 670, 673, 829, 834, 871, 1055, 1202
GsuI	CTGGAG	3 cut(s)	146, 279, 698
HaeII	RGCGCY	4 cut(s)	400, 678, 834, 1019
HaeIII	GGCC	8 cut(s)	113, 144, 405, 470, 681, 1044, 1098, 1432
HapII	CCGG	8 cut(s)	114, 431, 660, 678, 820, 1058, 1099, 1460
HgaI	GACGC	5 cut(s)	298, 358, 598, 1050, 1230
HhaI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
Hin1I	GRCGYC	4 cut(s)	590, 831, 1061, 1241
Hin1II	CATG	6 cut(s)	16, 112, 331, 466, 511, 667
Hin6I	GCGC	8 cut(s)	397, 675, 701, 703, 831, 873, 1016, 1386
HinP1I	GCGC	8 cut(s)	397, 675, 701, 703, 831, 873, 1016, 1386
HincII	GTYRAC	3 cut(s)	76, 274, 568
HindII	GTYRAC	3 cut(s)	76, 274, 568
HinfI	GANTC	4 cut(s)	117, 170, 436, 512
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	8 cut(s)	114, 431, 660, 678, 820, 1058, 1099, 1460
HphI	GGTGA	5 cut(s)	292, 622, 754, 1201, 1349
Hpy166II	GTNNAC	5 cut(s)	76, 238, 274, 568, 892
Hpy188I	TCNGA	7 cut(s)	632, 862, 996, 1066, 1145, 1407, 1426
Hpy188III	TCNNGA	9 cut(s)	379, 523, 643, 820, 1033, 1108, 1136, 1363, 1393
Hpy8I	GTNNAC	5 cut(s)	76, 238, 274, 568, 892
HpyAV	CCTTC	5 cut(s)	325, 334, 956, 1176, 1312
HpyCH4III	ACNGT	3 cut(s)	235, 572, 1290
HpyCH4IV	ACGT	4 cut(s)	894, 969, 1274, 1421
HpyF10VI	GCNNNNNNNGC	5 cut(s)	160, 669, 678, 1013, 1054
HpyF3I	CTNAG	2 cut(s)	350, 1473
HpySE526I	ACGT	4 cut(s)	894, 969, 1274, 1421
Hsp92I	GRCGYC	4 cut(s)	590, 831, 1061, 1241
Hsp92II	CATG	6 cut(s)	16, 112, 331, 466, 511, 667
HspAI	GCGC	8 cut(s)	397, 675, 701, 703, 831, 873, 1016, 1386
KasI	GGCGCC	1 cut(s)	830
Kpn2I	TCCGGA	1 cut(s)	819
KroI	GCCGGC	2 cut(s)	677, 1057
KroNI	GCCGGC	2 cut(s)	679, 1059
Ksp22I	TGATCA	1 cut(s)	612
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
Lsp1109I	GCAGC	4 cut(s)	656, 684, 1041, 1188
LweI	GCATC	4 cut(s)	730, 786, 1176, 1455
MaeI	CTAG	2 cut(s)	474, 1049
MaeII	ACGT	4 cut(s)	894, 969, 1274, 1421
MaeIII	GTNAC	2 cut(s)	298, 1284
MalI	GATC	7 cut(s)	186, 389, 614, 758, 993, 1040, 1193
MbiI	CCGCTC	2 cut(s)	258, 1368
MboI	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
MboII	GAAGA	9 cut(s)	214, 490, 538, 571, 808, 962, 965, 1075, 1219
MflI	RGATCY	2 cut(s)	387, 991
MhlI	GDGCHC	7 cut(s)	336, 492, 537, 867, 1161, 1233, 1434
MluCI	AATT	4 cut(s)	727, 975, 1210, 1453
Mly113I	GGCGCC	1 cut(s)	831
MlyI	GAGTC	2 cut(s)	164, 506
MmeI	TCCRAC	4 cut(s)	51, 756, 952, 1044
MroI	TCCGGA	1 cut(s)	819
MroNI	GCCGGC	2 cut(s)	677, 1057
MseI	TTAA	2 cut(s)	567, 1374
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	1219
MspI	CCGG	8 cut(s)	114, 431, 660, 678, 820, 1058, 1099, 1460
MspR9I	CCNGG	3 cut(s)	716, 1435, 1460
Mva1269I	GAATGC	1 cut(s)	1358
MvaI	CCWGG	2 cut(s)	716, 1435
MvnI	CGCG	7 cut(s)	309, 703, 705, 737, 873, 1175, 1388
MwoI	GCNNNNNNNGC	5 cut(s)	160, 669, 678, 1013, 1054
NaeI	GCCGGC	2 cut(s)	679, 1059
NarI	GGCGCC	1 cut(s)	831
NciI	CCSGG	1 cut(s)	1460
NcoI	CCATGG	2 cut(s)	462, 507
NdeII	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
NgoMIV	GCCGGC	2 cut(s)	677, 1057
NlaIII	CATG	6 cut(s)	16, 112, 331, 466, 511, 667
NlaIV	GGNNCC	4 cut(s)	145, 389, 832, 1432
NmeAIII	GCCGAG	3 cut(s)	36, 120, 581
NmuCI	GTSAC	2 cut(s)	298, 1284
PaeR7I	CTCGAG	1 cut(s)	392
PaqCI	CACCTGC	1 cut(s)	311
PasI	CCCWGGG	1 cut(s)	1434
PauI	GCGCGC	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	7 cut(s)	147, 590, 602, 741, 750, 1031, 1280
PctI	GAATGC	1 cut(s)	1358
PdiI	GCCGGC	2 cut(s)	679, 1059
PfeI	GAWTC	2 cut(s)	117, 436
PflFI	GACNNNGTC	1 cut(s)	592
PkrI	GCNGC	9 cut(s)	308, 472, 671, 674, 830, 835, 872, 1056, 1203
Ple19I	CGATCG	1 cut(s)	1041
PleI	GAGTC	2 cut(s)	164, 506
PluTI	GGCGCC	1 cut(s)	834
PpsI	GAGTC	2 cut(s)	164, 506
Ppu21I	YACGTR	1 cut(s)	895
Psp124BI	GAGCTC	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	969
Psp6I	CCWGG	2 cut(s)	714, 1433
PspGI	CCWGG	2 cut(s)	714, 1433
PspN4I	GGNNCC	4 cut(s)	145, 389, 832, 1432
PspOMI	GGGCCC	1 cut(s)	1430
PspPI	GGNCC	8 cut(s)	143, 403, 858, 889, 1043, 1407, 1430, 1431
PspXI	VCTCGAGB	1 cut(s)	392
PstI	CTGCAG	2 cut(s)	674, 1206
PstNI	CAGNNNCTG	1 cut(s)	1075
PsuI	RGATCY	2 cut(s)	387, 991
PsyI	GACNNNGTC	1 cut(s)	592
PteI	GCGCGC	1 cut(s)	701
PvuI	CGATCG	1 cut(s)	1041
PvuII	CAGCTG	1 cut(s)	1219
RsaI	GTAC	4 cut(s)	68, 623, 1295, 1307
RsaNI	GTAC	4 cut(s)	67, 622, 1294, 1306
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	567, 1374
SatI	GCNGC	9 cut(s)	307, 471, 670, 673, 829, 834, 871, 1055, 1202
Sau3AI	GATC	7 cut(s)	184, 387, 612, 756, 991, 1038, 1191
Sau96I	GGNCC	8 cut(s)	143, 403, 858, 889, 1043, 1407, 1430, 1431
SchI	GAGTC	2 cut(s)	164, 506
ScrFI	CCNGG	3 cut(s)	716, 1435, 1460
SduI	GDGCHC	7 cut(s)	336, 492, 537, 867, 1161, 1233, 1434
SfaNI	GCATC	4 cut(s)	730, 786, 1176, 1455
SfcI	CTRYAG	3 cut(s)	571, 670, 1202
SfoI	GGCGCC	1 cut(s)	832
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	3 cut(s)	858, 889, 1407
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	4 cut(s)	41, 158, 392, 536
SmoI	CTYRAG	4 cut(s)	41, 158, 392, 536
Sse9I	AATT	4 cut(s)	727, 975, 1210, 1453
SspDI	GGCGCC	1 cut(s)	830
SspMI	CTAG	2 cut(s)	474, 1049
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	714, 1433, 1458
StyI	CCWWGG	3 cut(s)	462, 507, 778
TaaI	ACNGT	3 cut(s)	235, 572, 1290
TaiI	ACGT	4 cut(s)	897, 972, 1277, 1424
TasI	AATT	4 cut(s)	727, 975, 1210, 1453
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	5 cut(s)	309, 473, 831, 836, 873
TfiI	GAWTC	2 cut(s)	117, 436
Tru1I	TTAA	2 cut(s)	567, 1374
Tru9I	TTAA	2 cut(s)	567, 1374
TscAI	CASTG	3 cut(s)	1238, 1260, 1293
TseFI	GTSAC	2 cut(s)	298, 1284
TseI	GCWGC	4 cut(s)	669, 672, 1054, 1201
Tsp45I	GTSAC	2 cut(s)	298, 1284
TspDTI	ATGAA	4 cut(s)	214, 316, 1343, 1454
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	3 cut(s)	1238, 1260, 1293
Tth111I	GACNNNGTC	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	858, 889, 1407
XagI	CCTNNNNNAGG	3 cut(s)	125, 410, 713
XapI	RAATTY	2 cut(s)	975, 1210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	392
XmiI	GTMKAC	2 cut(s)	237, 273
XspI	CTAG	2 cut(s)	474, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.