Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013829

Physical Location & Seq

Genomic Coordinates Reverse (-)

3048357 .. 3049847

Gene Structure 1491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1043300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGCCTCCAATCTTGCCGGACTTCTCCAACTCCGTCAAGCTCAAGTATGTCAAGCTCGGCTACCAGTACCTCGTCAACCACATTCTCACCCTCACTCTCATCCCCATCATGGCCGGTATCCTCCTGGAGGTCCTCCGCCTCAGCCCCGACGAGCTTCTCAAGCTCTGGGACTCCCTCCACTTCGACCTCGTCCAAATCCTATGCTCCTCCTTCCTCATCATCTTCATCGCCACCGTCTACTTCATGTCCAAACCCCGCCCCATCTACCTTGTCGACTACGCCTGCTTCAAACCTCCGGTCATGTGCCGCGTTCCGTTCTCCACCTTCATGGAGCATTCCCGCCTCATTCTCAGCAACAACCCTAAGAGCGTCGAGTTCCAGATGAGGATCCTCGAGCGCTCGGGCCTCGGCGAGGAGACTTGCCTCCCTCAGGCAATCCACTACATTCCGCCCAACCCCACCATGGAGGCCGCGAGGGGCGAGGCGGAGCTCGTCATCTTCTCCGCTATGGACTCTCTGTTCGAGAAAACGGGGCTCAAGCCCAAAGACATCGATATTCTTATCGTCAACTGCAGCCTCTTCTCGCCGACGCCGTCTCTCTCGGCGATGGTGATCAACAAATACAAGCTGAGGAGCAACATCAAGAGCTTCAATCTCTCCGGCATGGGCTGCAGCGCCGGCCTCATCTCAATCGATTTGGCGCGCGACCTCCTCCAGGTGCATCCCAACTCCAACGCGGTTGTCGTCAGCACCGAGATCATCACCCCGAACTATTACCAAGGCAATGAGAGGGCGATGCTCCTCCCCAACTGCCTCTTCCGGATGGGAGGCGCCGCCTTGCTTTTATCGAACAGGAGGTCCGAGCACCGCCGCGCCAAGTACCGATTGGTCCACGTAGTCCGGACCCACAAGGGAGCCGACGACAAGGCGTATAAGTGCGTGTTCGAAGAAGAGGACAAGGAGGGCAAAGTTGGAATTTCGCTCTCTAAAGATCTGATGGCAATTGCGGGGGAAGCGCTGAAATCGAACATCACGACGATCGGGCCGCTGGTGCTGCCAGCGTCGGAGCAGTTGCTGTTTCTCATCACGCTCATCGGGCGGAAAATCTTGAACCCGAAATGGAAGCCCTACATTCCAGATTTCCGACAGGCGTTCGAGCACTTCTGCATCCACGCGGGCGGGAGAGCAGTGATCGACGAGCTGCAGAAGAATTTACAGCTGTCGGCGGAGCACTGCGAGGCGTCGAGGATGACGCTGCATAGGTTCGGCAATACGTCGTCGTCATCGCTGTGGTACGAGTTGGGGTACATCGAGGCGAAGGGTAGGATGAGAAAAGGTGATAGGGTTTGGCAGATTGCGTTCGGGAGCGGGTTTAAGTGCAACAGCGCTGTTTGGAAGTGCAATCGAGCCATCAAAACGGCGTCAGATGGACCCTGGGCTGATTGCATCGATAGGTACCCGGTTCATATTCCTGAAGTGGTGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009653 GO:0009826 GO:0009856 GO:0009922 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016746 GO:0016747 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051704 GO:0060560 GO:0071704 GO:0071840 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

497

Amino Acids

55.84

Weight (kDa)

8.95

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	80 - 368	2.3e-139	FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C	PF08541	386 - 466	7.7e-12	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C	PF02797	388 - 459	1.1e-08	Chalcone and stilbene synthases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25450 AT1G68530
fragaria_vesca	FvH4_4g27420
malus_domestica	MD13G1042400.v1.1 MD16G1043300.v1.1
prunus_persica	Prupe.1G310500_v2.0.a1
pyrus_communis	pycom13g03670 pycom13g03690 pycom16g03740
rosa_chinensis	RchiOBHm_Chr4g0435241
rosa_laevigata	RLG00000006606
rosa_multiflora	Rmu_ssc0000339.1_g000014
rosa_roxburghii	Rroxscaffold_5G00376470
rosa_rugosa	Rorug04G0283600
rosa_samantha	Rh4AG339100 Rh4DG341700
rosa_wichuraiana	Rw4G029580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1455
AccB1I	GGYRCC	2 cut(s)	830, 1455
AccBSI	CCGCTC	1 cut(s)	1368
AccI	GTMKAC	2 cut(s)	237, 273
AccII	CGCG	7 cut(s)	309, 473, 703, 705, 737, 873, 1175
AccIII	TCCGGA	2 cut(s)	819, 900
AclWI	GGATC	2 cut(s)	382, 395
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	975, 1210
AcyI	GRCGYC	4 cut(s)	590, 831, 1241, 1421
AfaI	GTAC	5 cut(s)	68, 881, 1295, 1307, 1457
AfeI	AGCGCT	3 cut(s)	398, 1017, 1387
AfiI	CCNNNNNNNGG	6 cut(s)	109, 127, 412, 430, 463, 715
AgsI	TTSAA	3 cut(s)	289, 652, 1111
AjnI	CCWGG	3 cut(s)	123, 714, 1433
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AloI	GAACNNNNNNTCC	4 cut(s)	503, 535, 842, 874
Alw21I	GWGCWC	4 cut(s)	492, 867, 1161, 1233
Alw26I	GTCTC	2 cut(s)	410, 600
AlwI	GGATC	2 cut(s)	382, 395
AlwNI	CAGNNNCTG	1 cut(s)	1075
Ama87I	CYCGRG	2 cut(s)	392, 400
Aor13HI	TCCGGA	2 cut(s)	819, 900
Aor51HI	AGCGCT	3 cut(s)	398, 1017, 1387
AoxI	GGCC	5 cut(s)	111, 403, 468, 679, 1043
ApeKI	GCWGC	6 cut(s)	573, 669, 672, 1054, 1201, 1255
ApoI	RAATTY	2 cut(s)	975, 1210
ArsI	GACNNNNNNTTYG	6 cut(s)	282, 314, 503, 535, 842, 874
Asp718I	GGTACC	1 cut(s)	1455
AspLEI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
AspS9I	GGNCC	7 cut(s)	130, 403, 858, 889, 903, 1043, 1430
AsuC2I	CCSGG	1 cut(s)	1460
AsuHPI	GGTGA	4 cut(s)	79, 622, 754, 1349
AsuII	TTCGAA	1 cut(s)	945
AvaI	CYCGRG	2 cut(s)	392, 400
AvaII	GGWCC	5 cut(s)	130, 858, 889, 903, 1430
AxyI	CCTNAGG	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	387
BanI	GGYRCC	2 cut(s)	830, 1455
BanII	GRGCYC	2 cut(s)	492, 537
Bbv12I	GWGCWC	4 cut(s)	492, 867, 1161, 1233
BbvCI	CCTCAGC	2 cut(s)	140, 629
BbvI	GCAGC	6 cut(s)	585, 656, 684, 1041, 1188, 1242
BccI	CCATC	7 cut(s)	113, 269, 601, 817, 991, 1418, 1421
BceAI	ACGGC	2 cut(s)	577, 1434
BciT130I	CCWGG	3 cut(s)	125, 716, 1435
BciVI	GTATCC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	1460
BcoDI	GTCTC	2 cut(s)	410, 600
BfmI	CTRYAG	3 cut(s)	571, 670, 1202
BfoI	RGCGCY	5 cut(s)	400, 678, 834, 1019, 1389
BfuI	GTATCC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	991
Bme1390I	CCNGG	4 cut(s)	125, 716, 1435, 1460
Bme18I	GGWCC	5 cut(s)	130, 858, 889, 903, 1430
BmeT110I	CYCGRG	2 cut(s)	392, 400
BmgT120I	GGNCC	7 cut(s)	130, 403, 858, 889, 903, 1043, 1430
BmiI	GGNNCC	6 cut(s)	389, 832, 905, 916, 1432, 1457
BmrFI	CCNGG	4 cut(s)	125, 716, 1435, 1460
BmsI	GCATC	4 cut(s)	730, 786, 1176, 1455
BpmI	CTGGAG	2 cut(s)	146, 698
Bpu10I	CCTNAGC	2 cut(s)	140, 629
Bpu14I	TTCGAA	1 cut(s)	945
BpuEI	CTTGAG	3 cut(s)	26, 143, 521
BpuMI	CCSGG	1 cut(s)	1460
Bsa29I	ATCGAT	3 cut(s)	552, 693, 1449
BsaAI	YACGTR	1 cut(s)	895
BsaBI	GATNNNNATC	2 cut(s)	386, 611
BsaHI	GRCGYC	4 cut(s)	590, 831, 1241, 1421
BsaJI	CCNNGG	5 cut(s)	406, 462, 778, 1433, 1434
BsaWI	WCCGGW	3 cut(s)	295, 819, 900
Bsc4I	CCNNNNNNNGG	6 cut(s)	109, 127, 412, 430, 463, 715
Bse118I	RCCGGY	2 cut(s)	113, 677
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	790
Bse8I	GATNNNNATC	2 cut(s)	386, 611
BseAI	TCCGGA	2 cut(s)	819, 900
BseBI	CCWGG	3 cut(s)	125, 716, 1435
BseCI	ATCGAT	3 cut(s)	552, 693, 1449
BseDI	CCNNGG	5 cut(s)	406, 462, 778, 1433, 1434
BseGI	GGATG	6 cut(s)	99, 721, 828, 1167, 1254, 1332
BseJI	GATNNNNATC	2 cut(s)	386, 611
BseLI	CCNNNNNNNGG	6 cut(s)	109, 127, 412, 430, 463, 715
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	4 cut(s)	154, 364, 443, 620
BseNI	ACTGG	1 cut(s)	64
BsePI	GCGCGC	1 cut(s)	701
BseRI	GAGGAG	5 cut(s)	196, 428, 646, 701, 791
BseXI	GCAGC	6 cut(s)	585, 656, 684, 1041, 1188, 1242
Bsh1236I	CGCG	7 cut(s)	309, 473, 703, 705, 737, 873, 1175
Bsh1285I	CGRYCG	1 cut(s)	1041
BshFI	GGCC	5 cut(s)	113, 405, 470, 681, 1045
BshNI	GGYRCC	2 cut(s)	830, 1455
BshVI	ATCGAT	3 cut(s)	552, 693, 1449
BsiEI	CGRYCG	1 cut(s)	1041
BsiHKAI	GWGCWC	4 cut(s)	492, 867, 1161, 1233
BsiHKCI	CYCGRG	2 cut(s)	392, 400
BsiSI	CCGG	8 cut(s)	17, 114, 296, 660, 678, 820, 901, 1460
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	6 cut(s)	109, 127, 412, 430, 463, 715
BsmAI	GTCTC	2 cut(s)	410, 600
BsmBI	CGTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	5 cut(s)	113, 405, 470, 681, 1045
BsoBI	CYCGRG	2 cut(s)	392, 400
Bsp119I	TTCGAA	1 cut(s)	945
Bsp1286I	GDGCHC	5 cut(s)	492, 537, 867, 1161, 1233
Bsp13I	TCCGGA	2 cut(s)	819, 900
Bsp143I	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
Bsp19I	CCATGG	1 cut(s)	462
BspANI	GGCC	5 cut(s)	113, 405, 470, 681, 1045
BspCNI	CTCAG	4 cut(s)	153, 363, 442, 621
BspDI	ATCGAT	3 cut(s)	552, 693, 1449
BspEI	TCCGGA	2 cut(s)	819, 900
BspFNI	CGCG	7 cut(s)	309, 473, 703, 705, 737, 873, 1175
BspLI	GGNNCC	6 cut(s)	389, 832, 905, 916, 1432, 1457
BspMAI	CTGCAG	3 cut(s)	575, 674, 1206
BspPI	GGATC	2 cut(s)	382, 395
BspT104I	TTCGAA	1 cut(s)	945
BspT107I	GGYRCC	2 cut(s)	830, 1455
BsrBI	CCGCTC	1 cut(s)	1368
BsrDI	GCAATG	1 cut(s)	790
BsrFI	RCCGGY	2 cut(s)	113, 677
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	2 cut(s)	113, 677
BssECI	CCNNGG	5 cut(s)	406, 462, 778, 1433, 1434
BssHII	GCGCGC	1 cut(s)	701
BssMI	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
BssNI	GRCGYC	4 cut(s)	590, 831, 1241, 1421
BssT1I	CCWWGG	2 cut(s)	462, 778
Bst2UI	CCWGG	3 cut(s)	125, 716, 1435
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	3 cut(s)	584, 821, 945
BstACI	GRCGYC	4 cut(s)	590, 831, 1241, 1421
BstAPI	GCANNNNNTGC	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	895
BstBI	TTCGAA	1 cut(s)	945
BstC8I	GCNNGC	5 cut(s)	283, 679, 703, 1059, 1177
BstDEI	CTNAG	5 cut(s)	140, 350, 363, 429, 629
BstDSI	CCRYGG	1 cut(s)	462
BstENI	CCTNNNNNAGG	4 cut(s)	125, 410, 428, 713
BstF5I	GGATG	6 cut(s)	99, 721, 828, 1167, 1254, 1332
BstFNI	CGCG	7 cut(s)	309, 473, 703, 705, 737, 873, 1175
BstH2I	RGCGCY	5 cut(s)	400, 678, 834, 1019, 1389
BstHHI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
BstKTI	GATC	6 cut(s)	390, 615, 759, 994, 1041, 1194
BstMAI	GTCTC	2 cut(s)	410, 600
BstMBI	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
BstMCI	CGRYCG	1 cut(s)	1041
BstMWI	GCNNNNNNNGC	7 cut(s)	160, 669, 678, 1013, 1051, 1054, 1096
BstNI	CCWGG	3 cut(s)	125, 716, 1435
BstSCI	CCNGG	4 cut(s)	123, 714, 1433, 1458
BstSFI	CTRYAG	3 cut(s)	571, 670, 1202
BstUI	CGCG	7 cut(s)	309, 473, 703, 705, 737, 873, 1175
BstV1I	GCAGC	6 cut(s)	585, 656, 684, 1041, 1188, 1242
BstX2I	RGATCY	2 cut(s)	387, 991
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	2 cut(s)	387, 991
Bsu15I	ATCGAT	3 cut(s)	552, 693, 1449
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	5 cut(s)	113, 405, 470, 681, 1045
BsuTUI	ATCGAT	3 cut(s)	552, 693, 1449
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	4 cut(s)	211, 620, 809, 1269
BtsCI	GGATG	6 cut(s)	99, 721, 828, 1167, 1254, 1332
BtsI	GCAGTG	2 cut(s)	1194, 1231
BtsIMutI	CAGTG	2 cut(s)	1194, 1231
Cac8I	GCNNGC	5 cut(s)	283, 679, 703, 1059, 1177
CaiI	CAGNNNCTG	1 cut(s)	1075
CfoI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
Cfr10I	RCCGGY	2 cut(s)	113, 677
Cfr13I	GGNCC	7 cut(s)	130, 403, 858, 889, 903, 1043, 1430
ClaI	ATCGAT	3 cut(s)	552, 693, 1449
CseI	GACGC	6 cut(s)	358, 598, 1050, 1230, 1261, 1410
Csp6I	GTAC	5 cut(s)	67, 880, 1294, 1306, 1456
CviAII	CATG	6 cut(s)	109, 244, 301, 328, 463, 664
CviQI	GTAC	5 cut(s)	67, 880, 1294, 1306, 1456
DdeI	CTNAG	5 cut(s)	140, 350, 363, 429, 629
DinI	GGCGCC	1 cut(s)	832
DpnI	GATC	6 cut(s)	389, 614, 758, 993, 1040, 1193
DpnII	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	3 cut(s)	584, 821, 945
EarI	CTCTTC	3 cut(s)	584, 821, 945
EciI	GGCGGA	5 cut(s)	125, 438, 500, 1114, 1241
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	2 cut(s)	462, 778
Eco24I	GRGCYC	2 cut(s)	492, 537
Eco47I	GGWCC	5 cut(s)	130, 858, 889, 903, 1430
Eco47III	AGCGCT	3 cut(s)	398, 1017, 1387
Eco53kI	GAGCTC	1 cut(s)	490
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	2 cut(s)	392, 400
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	4 cut(s)	125, 410, 428, 713
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	3 cut(s)	123, 714, 1433
EcoT14I	CCWWGG	2 cut(s)	462, 778
EcoT38I	GRGCYC	2 cut(s)	492, 537
EgeI	GGCGCC	1 cut(s)	832
EheI	GGCGCC	1 cut(s)	832
ErhI	CCWWGG	2 cut(s)	462, 778
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	6 cut(s)	112, 247, 304, 331, 466, 667
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	6 cut(s)	108, 243, 300, 327, 462, 663
FauI	CCCGC	6 cut(s)	263, 347, 1000, 1168, 1172, 1361
FbaI	TGATCA	1 cut(s)	612
FblI	GTMKAC	2 cut(s)	237, 273
FokI	GGATG	6 cut(s)	86, 708, 835, 1154, 1261, 1339
FriOI	GRGCYC	2 cut(s)	492, 537
GlaI	GCGC	8 cut(s)	398, 676, 702, 704, 832, 874, 1017, 1387
GsuI	CTGGAG	2 cut(s)	146, 698
HaeII	RGCGCY	5 cut(s)	400, 678, 834, 1019, 1389
HaeIII	GGCC	5 cut(s)	113, 405, 470, 681, 1045
HapII	CCGG	8 cut(s)	17, 114, 296, 660, 678, 820, 901, 1460
HgaI	GACGC	6 cut(s)	358, 598, 1050, 1230, 1261, 1410
HhaI	GCGC	8 cut(s)	399, 677, 703, 705, 833, 875, 1018, 1388
Hin1I	GRCGYC	4 cut(s)	590, 831, 1241, 1421
Hin1II	CATG	6 cut(s)	112, 247, 304, 331, 466, 667
Hin6I	GCGC	8 cut(s)	397, 675, 701, 703, 831, 873, 1016, 1386
HinP1I	GCGC	8 cut(s)	397, 675, 701, 703, 831, 873, 1016, 1386
HincII	GTYRAC	3 cut(s)	76, 274, 568
HindII	GTYRAC	3 cut(s)	76, 274, 568
HindIII	AAGCTT	1 cut(s)	1484
HinfI	GANTC	2 cut(s)	170, 512
HpaII	CCGG	8 cut(s)	17, 114, 296, 660, 678, 820, 901, 1460
HphI	GGTGA	4 cut(s)	79, 622, 754, 1349
Hpy166II	GTNNAC	5 cut(s)	76, 238, 274, 568, 892
Hpy188I	TCNGA	5 cut(s)	862, 996, 1066, 1145, 1426
Hpy8I	GTNNAC	5 cut(s)	76, 238, 274, 568, 892
HpyAV	CCTTC	3 cut(s)	220, 334, 1312
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	894, 1274
HpyCH4V	TGCA	9 cut(s)	573, 672, 721, 1167, 1204, 1258, 1380, 1401, 1446
HpyF10VI	GCNNNNNNNGC	7 cut(s)	160, 669, 678, 1013, 1051, 1054, 1096
HpyF3I	CTNAG	5 cut(s)	140, 350, 363, 429, 629
HpySE526I	ACGT	2 cut(s)	894, 1274
Hsp92I	GRCGYC	4 cut(s)	590, 831, 1241, 1421
Hsp92II	CATG	6 cut(s)	112, 247, 304, 331, 466, 667
HspAI	GCGC	8 cut(s)	397, 675, 701, 703, 831, 873, 1016, 1386
KasI	GGCGCC	1 cut(s)	830
Kpn2I	TCCGGA	2 cut(s)	819, 900
KpnI	GGTACC	1 cut(s)	1459
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
LmnI	GCTCC	9 cut(s)	209, 331, 487, 633, 804, 914, 1066, 1228, 1365
Lsp1109I	GCAGC	6 cut(s)	585, 656, 684, 1041, 1188, 1242
LweI	GCATC	4 cut(s)	730, 786, 1176, 1455
MaeII	ACGT	2 cut(s)	894, 1274
MalI	GATC	6 cut(s)	389, 614, 758, 993, 1040, 1193
MbiI	CCGCTC	1 cut(s)	1368
MboI	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
MboII	GAAGA	7 cut(s)	214, 490, 571, 808, 959, 962, 1219
MfeI	CAATTG	1 cut(s)	1002
MflI	RGATCY	2 cut(s)	387, 991
MhlI	GDGCHC	5 cut(s)	492, 537, 867, 1161, 1233
MluCI	AATT	3 cut(s)	975, 1002, 1210
Mly113I	GGCGCC	1 cut(s)	831
MlyI	GAGTC	2 cut(s)	164, 506
MmeI	TCCRAC	5 cut(s)	51, 756, 952, 1044, 1168
MroI	TCCGGA	2 cut(s)	819, 900
MroNI	GCCGGC	1 cut(s)	677
MseI	TTAA	1 cut(s)	1374
MslI	CAYNNNNRTG	2 cut(s)	326, 1288
MspA1I	CMGCKG	2 cut(s)	1048, 1219
MspI	CCGG	8 cut(s)	17, 114, 296, 660, 678, 820, 901, 1460
MspR9I	CCNGG	4 cut(s)	125, 716, 1435, 1460
MunI	CAATTG	1 cut(s)	1002
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	3 cut(s)	125, 716, 1435
MvnI	CGCG	7 cut(s)	309, 473, 703, 705, 737, 873, 1175
MwoI	GCNNNNNNNGC	7 cut(s)	160, 669, 678, 1013, 1051, 1054, 1096
NaeI	GCCGGC	1 cut(s)	679
NarI	GGCGCC	1 cut(s)	831
NciI	CCSGG	1 cut(s)	1460
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
NgoMIV	GCCGGC	1 cut(s)	677
NlaIII	CATG	6 cut(s)	112, 247, 304, 331, 466, 667
NlaIV	GGNNCC	6 cut(s)	389, 832, 905, 916, 1432, 1457
NmeAIII	GCCGAG	3 cut(s)	36, 387, 581
NspV	TTCGAA	1 cut(s)	945
PaeR7I	CTCGAG	1 cut(s)	392
PasI	CCCWGGG	1 cut(s)	1434
PauI	GCGCGC	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	4 cut(s)	590, 741, 750, 1031
PctI	GAATGC	1 cut(s)	334
PdiI	GCCGGC	1 cut(s)	679
PflFI	GACNNNGTC	2 cut(s)	188, 592
PfoI	TCCNGGA	1 cut(s)	123
Ple19I	CGATCG	1 cut(s)	1041
PleI	GAGTC	2 cut(s)	164, 506
PluTI	GGCGCC	1 cut(s)	834
PpsI	GAGTC	2 cut(s)	164, 506
Ppu21I	YACGTR	1 cut(s)	895
PpuMI	RGGWCCY	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	3 cut(s)	123, 714, 1433
PspGI	CCWGG	3 cut(s)	123, 714, 1433
PspN4I	GGNNCC	6 cut(s)	389, 832, 905, 916, 1432, 1457
PspPI	GGNCC	7 cut(s)	130, 403, 858, 889, 903, 1043, 1430
PspPPI	RGGWCCY	1 cut(s)	130
PspXI	VCTCGAGB	1 cut(s)	392
PstI	CTGCAG	3 cut(s)	575, 674, 1206
PstNI	CAGNNNCTG	1 cut(s)	1075
PsuI	RGATCY	2 cut(s)	387, 991
PsyI	GACNNNGTC	2 cut(s)	188, 592
PteI	GCGCGC	1 cut(s)	701
PvuI	CGATCG	1 cut(s)	1041
PvuII	CAGCTG	1 cut(s)	1219
RsaI	GTAC	5 cut(s)	68, 881, 1295, 1307, 1457
RsaNI	GTAC	5 cut(s)	67, 880, 1294, 1306, 1456
RseI	CAYNNNNRTG	2 cut(s)	326, 1288
SacI	GAGCTC	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	1374
Sau3AI	GATC	6 cut(s)	387, 612, 756, 991, 1038, 1191
Sau96I	GGNCC	7 cut(s)	130, 403, 858, 889, 903, 1043, 1430
SchI	GAGTC	2 cut(s)	164, 506
ScrFI	CCNGG	4 cut(s)	125, 716, 1435, 1460
SduI	GDGCHC	5 cut(s)	492, 537, 867, 1161, 1233
SfaNI	GCATC	4 cut(s)	730, 786, 1176, 1455
SfcI	CTRYAG	3 cut(s)	571, 670, 1202
SfoI	GGCGCC	1 cut(s)	832
Sfr274I	CTCGAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	945
SinI	GGWCC	5 cut(s)	130, 858, 889, 903, 1430
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	326, 1288
SmlI	CTYRAG	4 cut(s)	41, 158, 392, 536
SmoI	CTYRAG	4 cut(s)	41, 158, 392, 536
Sse9I	AATT	3 cut(s)	975, 1002, 1210
SspDI	GGCGCC	1 cut(s)	830
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	4 cut(s)	123, 714, 1433, 1458
StyI	CCWWGG	2 cut(s)	462, 778
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	897, 1277
TasI	AATT	3 cut(s)	975, 1002, 1210
TauI	GCSGC	5 cut(s)	309, 473, 836, 873, 1048
Tru1I	TTAA	1 cut(s)	1374
Tru9I	TTAA	1 cut(s)	1374
TscAI	CASTG	2 cut(s)	1194, 1238
TseI	GCWGC	6 cut(s)	573, 669, 672, 1054, 1201, 1255
TspDTI	ATGAA	4 cut(s)	214, 232, 316, 1454
TspGWI	ACGGA	2 cut(s)	22, 303
TspRI	CASTG	2 cut(s)	1194, 1238
Tth111I	GACNNNGTC	2 cut(s)	188, 592
VpaK11BI	GGWCC	5 cut(s)	130, 858, 889, 903, 1430
XagI	CCTNNNNNAGG	4 cut(s)	125, 410, 428, 713
XapI	RAATTY	2 cut(s)	975, 1210
XcmI	CCANNNNNNNNNTGG	2 cut(s)	460, 883
XhoI	CTCGAG	1 cut(s)	392
XmiI	GTMKAC	2 cut(s)	237, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.